HEADER TRANSFERASE 21-JUL-21 7RK3 TITLE CRYSTAL STRUCTURE OF HUMAN N-MYRISTOYLTRANSFERASE 1 FRAGMENT (RESIDUES TITLE 2 109-496) BOUND TO DIACYLATED HUMAN ARF6 OCTAPEPTIDE AND COENZYME A COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 29-416; COMPND 5 SYNONYM: MYRISTOYL-COA:PROTEIN N-MYRISTOYLTRANSFERASE 1,TYPE I N- COMPND 6 MYRISTOYLTRANSFERASE,PEPTIDE N-MYRISTOYLTRANSFERASE 1; COMPND 7 EC: 2.3.1.97; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: ADP-RIBOSYLATION FACTOR 6; COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NMT1, NMT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: ARF6; SOURCE 13 EXPRESSION_SYSTEM: UNIDENTIFIED; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 32644 KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.K.FENWICK,H.LIN REVDAT 2 03-APR-24 7RK3 1 REMARK REVDAT 1 27-JUL-22 7RK3 0 JRNL AUTH M.K.FENWICK,H.LIN JRNL TITL CRYSTAL STRUCTURE OF HUMAN N-MYRISTOYLTRANSFERASE 1 FRAGMENT JRNL TITL 2 (RESIDUES 109-496) BOUND TO DIACYLATED HUMAN ARF6 JRNL TITL 3 OCTAPEPTIDE AND COENZYME A JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.1_4122 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 24792 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1216 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 61.8600 - 4.2600 0.99 2792 159 0.1336 0.1718 REMARK 3 2 4.2600 - 3.3800 0.99 2680 123 0.1260 0.1573 REMARK 3 3 3.3800 - 2.9600 0.99 2637 136 0.1477 0.2324 REMARK 3 4 2.9600 - 2.6900 0.99 2645 118 0.1728 0.2510 REMARK 3 5 2.6900 - 2.4900 0.98 2568 135 0.1769 0.3040 REMARK 3 6 2.4900 - 2.3500 0.99 2590 154 0.1735 0.2682 REMARK 3 7 2.3500 - 2.2300 0.99 2576 135 0.1992 0.2836 REMARK 3 8 2.2300 - 2.1300 0.99 2605 118 0.2269 0.2894 REMARK 3 9 2.1300 - 2.0500 0.96 2483 138 0.2775 0.3080 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.040 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.34 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 145 THROUGH 235 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.5357 -2.7195 7.4577 REMARK 3 T TENSOR REMARK 3 T11: 0.2319 T22: 0.2049 REMARK 3 T33: 0.2112 T12: -0.0230 REMARK 3 T13: -0.0177 T23: 0.0172 REMARK 3 L TENSOR REMARK 3 L11: 1.5783 L22: 1.3349 REMARK 3 L33: 2.7919 L12: -0.6751 REMARK 3 L13: 0.1690 L23: 0.1032 REMARK 3 S TENSOR REMARK 3 S11: 0.0060 S12: -0.1244 S13: -0.0762 REMARK 3 S21: 0.0111 S22: 0.0419 S23: -0.0550 REMARK 3 S31: 0.0705 S32: 0.1328 S33: -0.0434 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 236 THROUGH 259 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.6075 -6.5583 8.8748 REMARK 3 T TENSOR REMARK 3 T11: 0.1741 T22: 0.2212 REMARK 3 T33: 0.1336 T12: -0.0630 REMARK 3 T13: -0.0104 T23: 0.0138 REMARK 3 L TENSOR REMARK 3 L11: 6.4641 L22: 5.2271 REMARK 3 L33: 2.2907 L12: -4.4023 REMARK 3 L13: -0.8150 L23: 0.1121 REMARK 3 S TENSOR REMARK 3 S11: -0.0711 S12: -0.0975 S13: 0.1967 REMARK 3 S21: 0.2748 S22: 0.0533 S23: -0.2001 REMARK 3 S31: 0.1625 S32: -0.1320 S33: 0.0076 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 260 THROUGH 308 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.0470 -7.4632 2.5940 REMARK 3 T TENSOR REMARK 3 T11: 0.2597 T22: 0.2090 REMARK 3 T33: 0.2531 T12: -0.0106 REMARK 3 T13: -0.0163 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 0.5819 L22: 0.6436 REMARK 3 L33: 2.9912 L12: 0.0866 REMARK 3 L13: -0.0202 L23: -0.2425 REMARK 3 S TENSOR REMARK 3 S11: -0.0345 S12: -0.0794 S13: -0.0496 REMARK 3 S21: -0.0272 S22: 0.0254 S23: 0.0214 REMARK 3 S31: 0.2342 S32: -0.1529 S33: 0.0112 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 309 THROUGH 326 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.0093 -13.1822 -27.9697 REMARK 3 T TENSOR REMARK 3 T11: 0.2898 T22: 0.2109 REMARK 3 T33: 0.2316 T12: -0.0545 REMARK 3 T13: 0.0521 T23: -0.0576 REMARK 3 L TENSOR REMARK 3 L11: 8.7875 L22: 8.7917 REMARK 3 L33: 9.3673 L12: 2.7008 REMARK 3 L13: 6.0866 L23: 4.4511 REMARK 3 S TENSOR REMARK 3 S11: 0.0292 S12: -0.0563 S13: -0.1669 REMARK 3 S21: -0.1753 S22: -0.1327 S23: 0.3201 REMARK 3 S31: -0.0439 S32: -0.4204 S33: 0.1286 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 327 THROUGH 407 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.7129 11.4524 -8.8911 REMARK 3 T TENSOR REMARK 3 T11: 0.2924 T22: 0.2438 REMARK 3 T33: 0.2368 T12: 0.0183 REMARK 3 T13: -0.0036 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 0.6622 L22: 1.8293 REMARK 3 L33: 2.4235 L12: -0.2932 REMARK 3 L13: 0.3080 L23: -0.9293 REMARK 3 S TENSOR REMARK 3 S11: -0.0552 S12: -0.0169 S13: 0.0988 REMARK 3 S21: 0.1051 S22: 0.1120 S23: 0.0211 REMARK 3 S31: -0.3915 S32: -0.1038 S33: -0.0541 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 408 THROUGH 496 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.2951 -1.9662 -10.0672 REMARK 3 T TENSOR REMARK 3 T11: 0.2651 T22: 0.1878 REMARK 3 T33: 0.2297 T12: -0.0156 REMARK 3 T13: -0.0168 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 1.3916 L22: 1.4544 REMARK 3 L33: 3.0278 L12: 0.1385 REMARK 3 L13: -0.1954 L23: -0.4191 REMARK 3 S TENSOR REMARK 3 S11: 0.0082 S12: 0.0268 S13: -0.1100 REMARK 3 S21: -0.1199 S22: 0.0614 S23: 0.1086 REMARK 3 S31: 0.0950 S32: -0.1799 S33: -0.0702 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.3399 -12.1743 -9.5551 REMARK 3 T TENSOR REMARK 3 T11: 0.2866 T22: 0.2245 REMARK 3 T33: 0.2726 T12: -0.0705 REMARK 3 T13: -0.0192 T23: 0.0387 REMARK 3 L TENSOR REMARK 3 L11: 7.3372 L22: 3.6160 REMARK 3 L33: 3.2345 L12: -2.2373 REMARK 3 L13: -0.7603 L23: -2.6192 REMARK 3 S TENSOR REMARK 3 S11: -0.4168 S12: 0.1074 S13: -0.3962 REMARK 3 S21: -0.5704 S22: 0.3724 S23: 0.5155 REMARK 3 S31: -0.6964 S32: -0.1795 S33: 0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7RK3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1000256754. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24871 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 106.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.47500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.19.1_4122 REMARK 200 STARTING MODEL: HSNMT1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG 3350, 200MM AMMONIUM REMARK 280 FORMATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.99200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.17100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.02300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.17100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.99200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.02300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 106 REMARK 465 PRO A 107 REMARK 465 HIS A 108 REMARK 465 MET A 109 REMARK 465 GLU A 110 REMARK 465 GLU A 111 REMARK 465 ALA A 112 REMARK 465 SER A 113 REMARK 465 LYS A 114 REMARK 465 ARG A 115 REMARK 465 SER A 116 REMARK 465 TYR A 117 REMARK 465 GLN A 118 REMARK 465 PHE A 119 REMARK 465 TRP A 120 REMARK 465 ASP A 121 REMARK 465 THR A 122 REMARK 465 GLN A 123 REMARK 465 PRO A 124 REMARK 465 VAL A 125 REMARK 465 PRO A 126 REMARK 465 LYS A 127 REMARK 465 LEU A 128 REMARK 465 GLY A 129 REMARK 465 GLU A 130 REMARK 465 VAL A 131 REMARK 465 VAL A 132 REMARK 465 ASN A 133 REMARK 465 THR A 134 REMARK 465 HIS A 135 REMARK 465 GLY A 136 REMARK 465 PRO A 137 REMARK 465 VAL A 138 REMARK 465 GLU A 139 REMARK 465 PRO A 140 REMARK 465 ASP A 141 REMARK 465 LYS A 142 REMARK 465 ASP A 143 REMARK 465 ASN A 144 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 180 -160.50 -75.33 REMARK 500 TYR A 236 -119.94 46.96 REMARK 500 SER A 256 17.85 58.71 REMARK 500 ASN A 302 76.28 -118.64 REMARK 500 ILE A 381 -63.10 -133.81 REMARK 500 PHE A 422 -102.79 -98.04 REMARK 500 MET A 456 -133.28 43.51 REMARK 500 REMARK 500 REMARK: NULL DBREF 7RK3 A 109 496 UNP P30419 NMT1_HUMAN 29 416 DBREF 7RK3 B 2 9 UNP P62330 ARF6_HUMAN 2 9 SEQADV 7RK3 GLY A 106 UNP P30419 EXPRESSION TAG SEQADV 7RK3 PRO A 107 UNP P30419 EXPRESSION TAG SEQADV 7RK3 HIS A 108 UNP P30419 EXPRESSION TAG SEQRES 1 A 391 GLY PRO HIS MET GLU GLU ALA SER LYS ARG SER TYR GLN SEQRES 2 A 391 PHE TRP ASP THR GLN PRO VAL PRO LYS LEU GLY GLU VAL SEQRES 3 A 391 VAL ASN THR HIS GLY PRO VAL GLU PRO ASP LYS ASP ASN SEQRES 4 A 391 ILE ARG GLN GLU PRO TYR THR LEU PRO GLN GLY PHE THR SEQRES 5 A 391 TRP ASP ALA LEU ASP LEU GLY ASP ARG GLY VAL LEU LYS SEQRES 6 A 391 GLU LEU TYR THR LEU LEU ASN GLU ASN TYR VAL GLU ASP SEQRES 7 A 391 ASP ASP ASN MET PHE ARG PHE ASP TYR SER PRO GLU PHE SEQRES 8 A 391 LEU LEU TRP ALA LEU ARG PRO PRO GLY TRP LEU PRO GLN SEQRES 9 A 391 TRP HIS CYS GLY VAL ARG VAL VAL SER SER ARG LYS LEU SEQRES 10 A 391 VAL GLY PHE ILE SER ALA ILE PRO ALA ASN ILE HIS ILE SEQRES 11 A 391 TYR ASP THR GLU LYS LYS MET VAL GLU ILE ASN PHE LEU SEQRES 12 A 391 CYS VAL HIS LYS LYS LEU ARG SER LYS ARG VAL ALA PRO SEQRES 13 A 391 VAL LEU ILE ARG GLU ILE THR ARG ARG VAL HIS LEU GLU SEQRES 14 A 391 GLY ILE PHE GLN ALA VAL TYR THR ALA GLY VAL VAL LEU SEQRES 15 A 391 PRO LYS PRO VAL GLY THR CYS ARG TYR TRP HIS ARG SER SEQRES 16 A 391 LEU ASN PRO ARG LYS LEU ILE GLU VAL LYS PHE SER HIS SEQRES 17 A 391 LEU SER ARG ASN MET THR MET GLN ARG THR MET LYS LEU SEQRES 18 A 391 TYR ARG LEU PRO GLU THR PRO LYS THR ALA GLY LEU ARG SEQRES 19 A 391 PRO MET GLU THR LYS ASP ILE PRO VAL VAL HIS GLN LEU SEQRES 20 A 391 LEU THR ARG TYR LEU LYS GLN PHE HIS LEU THR PRO VAL SEQRES 21 A 391 MET SER GLN GLU GLU VAL GLU HIS TRP PHE TYR PRO GLN SEQRES 22 A 391 GLU ASN ILE ILE ASP THR PHE VAL VAL GLU ASN ALA ASN SEQRES 23 A 391 GLY GLU VAL THR ASP PHE LEU SER PHE TYR THR LEU PRO SEQRES 24 A 391 SER THR ILE MET ASN HIS PRO THR HIS LYS SER LEU LYS SEQRES 25 A 391 ALA ALA TYR SER PHE TYR ASN VAL HIS THR GLN THR PRO SEQRES 26 A 391 LEU LEU ASP LEU MET SER ASP ALA LEU VAL LEU ALA LYS SEQRES 27 A 391 MET LYS GLY PHE ASP VAL PHE ASN ALA LEU ASP LEU MET SEQRES 28 A 391 GLU ASN LYS THR PHE LEU GLU LYS LEU LYS PHE GLY ILE SEQRES 29 A 391 GLY ASP GLY ASN LEU GLN TYR TYR LEU TYR ASN TRP LYS SEQRES 30 A 391 CYS PRO SER MET GLY ALA GLU LYS VAL GLY LEU VAL LEU SEQRES 31 A 391 GLN SEQRES 1 B 8 GLY LYS VAL LEU SER LYS ILE PHE HET 4PS A 501 26 HET MYR B 101 15 HET 6NA B 102 7 HETNAM 4PS 4'-DIPHOSPHO PANTETHEINE HETNAM MYR MYRISTIC ACID HETNAM 6NA HEXANOIC ACID HETSYN 4PS N~3~-[(2R)-2-HYDROXY-4-{[(S)-HYDROXY(PHOSPHONOOXY) HETSYN 2 4PS PHOSPHORYL]OXY}-3,3-DIMETHYLBUTANOYL]-N-(2- HETSYN 3 4PS SULFANYLETHYL)-BETA-ALANINAMIDE FORMUL 3 4PS C11 H24 N2 O10 P2 S FORMUL 4 MYR C14 H28 O2 FORMUL 5 6NA C6 H12 O2 FORMUL 6 HOH *440(H2 O) HELIX 1 AA1 ASP A 165 TYR A 180 1 16 HELIX 2 AA2 SER A 193 ARG A 202 1 10 HELIX 3 AA3 LEU A 207 GLN A 209 5 3 HELIX 4 AA4 LYS A 252 ARG A 255 5 4 HELIX 5 AA5 VAL A 259 LEU A 273 1 15 HELIX 6 AA6 ASN A 302 VAL A 309 1 8 HELIX 7 AA7 THR A 319 TYR A 327 1 9 HELIX 8 AA8 GLU A 342 LYS A 344 5 3 HELIX 9 AA9 ASP A 345 LYS A 358 1 14 HELIX 10 AB1 SER A 367 TYR A 376 1 10 HELIX 11 AB2 PRO A 430 LYS A 445 1 16 HELIX 12 AB3 GLU A 457 PHE A 461 5 5 HELIX 13 AB4 GLY A 487 VAL A 491 5 5 SHEET 1 AA112 PHE A 156 ALA A 160 0 SHEET 2 AA112 HIS A 211 VAL A 216 -1 O GLY A 213 N ASP A 159 SHEET 3 AA112 LEU A 222 ILE A 235 -1 O VAL A 223 N VAL A 214 SHEET 4 AA112 THR A 238 VAL A 250 -1 O THR A 238 N ILE A 235 SHEET 5 AA112 ALA A 279 ALA A 283 1 O VAL A 280 N VAL A 243 SHEET 6 AA112 GLY A 468 TYR A 479 -1 O TYR A 479 N ALA A 279 SHEET 7 AA112 GLY A 292 SER A 300 -1 N CYS A 294 O LEU A 474 SHEET 8 AA112 VAL A 449 LEU A 453 -1 O PHE A 450 N ARG A 299 SHEET 9 AA112 ALA A 418 SER A 421 1 N ALA A 419 O ASN A 451 SHEET 10 AA112 VAL A 394 THR A 402 -1 N TYR A 401 O TYR A 420 SHEET 11 AA112 ILE A 382 GLU A 388 -1 N VAL A 387 O THR A 395 SHEET 12 AA112 LEU A 338 PRO A 340 -1 N ARG A 339 O VAL A 386 SHEET 1 AA2 4 PHE A 156 ALA A 160 0 SHEET 2 AA2 4 HIS A 211 VAL A 216 -1 O GLY A 213 N ASP A 159 SHEET 3 AA2 4 LEU A 222 ILE A 235 -1 O VAL A 223 N VAL A 214 SHEET 4 AA2 4 LEU A 362 VAL A 365 -1 O THR A 363 N HIS A 234 SHEET 1 AA3 3 PHE A 188 PHE A 190 0 SHEET 2 AA3 3 SER A 405 ILE A 407 -1 O THR A 406 N ARG A 189 SHEET 3 AA3 3 SER A 415 LEU A 416 -1 O LEU A 416 N SER A 405 LINK N GLY B 2 C 6NA B 102 1555 1555 1.45 LINK NZ LYS B 3 C1 MYR B 101 1555 1555 1.44 CRYST1 47.984 76.046 106.342 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020840 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013150 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009404 0.00000