HEADER TRANSFERASE 22-JUL-21 7RKA TITLE CRYSTAL STRUCTURE ANALYSIS OF COLORADO POTATO BEETLE GLUTATHIONE-S TITLE 2 TRANSFERASE LDGSTU1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTATHIONE S-TRANSFERASE U1; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.5.1.18; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEPTINOTARSA DECEMLINEATA; SOURCE 3 ORGANISM_COMMON: COLORADO POTATO BEETLE, DORYPHORA DECEMLINEATA; SOURCE 4 ORGANISM_TAXID: 7539; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA II (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET9BC KEYWDS GLUTATHIONE S-TRANSFERASE, GSH, UNCLASSIFIED, COLORADO POTATO BEETLE, KEYWDS 2 IMIDOCLOPRID RESISTANT, LEPTINOTARSA DECEMLINEATA, COMPLEX, KEYWDS 3 GLUTATHIONE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.W.MOURAL,F.ZHU REVDAT 2 18-OCT-23 7RKA 1 REMARK REVDAT 1 06-JUL-22 7RKA 0 JRNL AUTH Y.LIU,T.MOURAL,S.KOIRALA B K,J.HERNANDEZ,Z.SHEN,A.ALYOKHIN, JRNL AUTH 2 F.ZHU JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF ONE JRNL TITL 2 UNCLASSIFIED GLUTATHIONE S-TRANSFERASE IN XENOBIOTIC JRNL TITL 3 ADAPTATION OF LEPTINOTARSA DECEMLINEATA. JRNL REF INT J MOL SCI V. 22 2021 JRNL REFN ESSN 1422-0067 JRNL PMID 34769352 JRNL DOI 10.3390/IJMS222111921 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.22 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 42475 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1741 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.2200 - 4.1200 1.00 3608 156 0.1696 0.1855 REMARK 3 2 4.1200 - 3.2700 1.00 3519 154 0.1453 0.1589 REMARK 3 3 3.2700 - 2.8600 1.00 3513 146 0.1484 0.1585 REMARK 3 4 2.8600 - 2.6000 1.00 3475 148 0.1542 0.1784 REMARK 3 5 2.6000 - 2.4100 1.00 3454 151 0.1497 0.1776 REMARK 3 6 2.4100 - 2.2700 1.00 3511 152 0.1507 0.1888 REMARK 3 7 2.2700 - 2.1500 1.00 3460 143 0.1563 0.1972 REMARK 3 8 2.1500 - 2.0600 1.00 3463 152 0.1602 0.1980 REMARK 3 9 2.0600 - 1.9800 1.00 3479 148 0.1709 0.2137 REMARK 3 10 1.9800 - 1.9100 0.98 3392 143 0.1815 0.2131 REMARK 3 11 1.9100 - 1.8500 0.91 3143 139 0.1983 0.2302 REMARK 3 12 1.8500 - 1.8000 0.78 2717 109 0.2257 0.2633 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.520 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7RKA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1000258429. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42482 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 29.220 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.04433 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.2800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.24900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.710 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 5ZFG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES, PH 6.5, 0.2 M SODIUM REMARK 280 CHLORIDE, 20% W/V PEG4000, EVAPORATION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 116.90400 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 56.39778 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 87.16780 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 213 REMARK 465 ASN A 214 REMARK 465 PRO A 215 REMARK 465 PRO A 216 REMARK 465 ASP A 217 REMARK 465 LEU A 218 REMARK 465 SER A 219 REMARK 465 HIS A 220 REMARK 465 MET A 221 REMARK 465 ASP A 222 REMARK 465 HIS A 223 REMARK 465 PRO A 224 REMARK 465 ILE A 225 REMARK 465 HIS A 226 REMARK 465 PRO A 227 REMARK 465 VAL A 228 REMARK 465 ARG A 229 REMARK 465 LYS A 230 REMARK 465 MET B 1 REMARK 465 LYS B 213 REMARK 465 ASN B 214 REMARK 465 PRO B 215 REMARK 465 PRO B 216 REMARK 465 ASP B 217 REMARK 465 LEU B 218 REMARK 465 SER B 219 REMARK 465 HIS B 220 REMARK 465 MET B 221 REMARK 465 ASP B 222 REMARK 465 HIS B 223 REMARK 465 PRO B 224 REMARK 465 ILE B 225 REMARK 465 HIS B 226 REMARK 465 PRO B 227 REMARK 465 VAL B 228 REMARK 465 ARG B 229 REMARK 465 LYS B 230 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 LYS A 48 O HOH A 402 1.55 REMARK 500 H LEU B 5 O LYS B 29 1.59 REMARK 500 O HOH A 491 O HOH A 546 1.86 REMARK 500 O HOH A 403 O HOH A 432 2.01 REMARK 500 O HOH B 301 O HOH B 335 2.03 REMARK 500 O HOH A 515 O HOH A 549 2.05 REMARK 500 OH TYR A 6 O HOH A 401 2.08 REMARK 500 NZ LYS A 48 O HOH A 402 2.09 REMARK 500 O HOH A 524 O HOH A 555 2.11 REMARK 500 OG1 THR A 83 O HOH A 403 2.12 REMARK 500 O HOH A 412 O HOH A 414 2.15 REMARK 500 NZ LYS A 80 O HOH A 404 2.15 REMARK 500 O HOH A 546 O HOH A 548 2.16 REMARK 500 O HOH B 378 O HOH B 387 2.16 REMARK 500 O HOH A 487 O HOH A 496 2.18 REMARK 500 O PHE B 120 O HOH B 301 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 426 O HOH B 426 2656 1.39 REMARK 500 O HOH A 523 O HOH A 523 2755 1.65 REMARK 500 OE2 GLU B 44 NH1 ARG B 108 2656 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 76 CG GLU B 76 CD -0.304 REMARK 500 GLU B 76 CD GLU B 76 OE2 -0.116 REMARK 500 LYS B 144 CE LYS B 144 NZ 0.182 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 48 CD - CE - NZ ANGL. DEV. = -22.5 DEGREES REMARK 500 PHE A 211 CB - CA - C ANGL. DEV. = 12.8 DEGREES REMARK 500 PHE A 211 CB - CG - CD2 ANGL. DEV. = -11.6 DEGREES REMARK 500 PHE A 211 CB - CG - CD1 ANGL. DEV. = 8.8 DEGREES REMARK 500 LYS B 29 CD - CE - NZ ANGL. DEV. = -20.3 DEGREES REMARK 500 GLU B 76 OE1 - CD - OE2 ANGL. DEV. = -40.8 DEGREES REMARK 500 GLU B 76 CG - CD - OE1 ANGL. DEV. = 52.5 DEGREES REMARK 500 GLU B 76 CG - CD - OE2 ANGL. DEV. = -17.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 45 43.41 -160.65 REMARK 500 GLU A 66 106.56 66.60 REMARK 500 TYR A 85 77.00 -156.93 REMARK 500 THR A 105 -63.13 -137.91 REMARK 500 HIS B 40 -9.52 77.09 REMARK 500 GLU B 66 105.57 71.16 REMARK 500 TYR B 85 78.96 -155.67 REMARK 500 THR B 105 -60.67 -137.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 211 GLU A 212 149.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 PHE A 211 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PHE A 211 -10.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 558 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A 559 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH B 458 DISTANCE = 5.82 ANGSTROMS DBREF1 7RKA A 1 230 UNP A0A1P8PEY0_LEPDE DBREF2 7RKA A A0A1P8PEY0 1 230 DBREF1 7RKA B 1 230 UNP A0A1P8PEY0_LEPDE DBREF2 7RKA B A0A1P8PEY0 1 230 SEQADV 7RKA GLU A 184 UNP A0A1P8PEY LYS 184 CONFLICT SEQADV 7RKA GLY A 203 UNP A0A1P8PEY GLU 203 CONFLICT SEQADV 7RKA GLU B 184 UNP A0A1P8PEY LYS 184 CONFLICT SEQADV 7RKA GLY B 203 UNP A0A1P8PEY GLU 203 CONFLICT SEQRES 1 A 230 MET PRO ILE THR LEU TYR SER VAL SER ASP GLY PRO PRO SEQRES 2 A 230 SER LEU ALA VAL ARG GLN ALA LEU GLU TYR LEU GLY LEU SEQRES 3 A 230 GLU HIS LYS LEU VAL ASN VAL ASP PHE GLY ILE GLY GLU SEQRES 4 A 230 HIS MET THR GLU GLU PHE ALA GLN LYS ASN PRO GLN LYS SEQRES 5 A 230 GLU ILE PRO VAL LEU ASP ASP ASN GLY PHE LEU LEU GLY SEQRES 6 A 230 GLU SER ASN ALA ILE LEU GLN TYR LEU ALA GLU ARG TYR SEQRES 7 A 230 GLY LYS ASP ASP THR ILE TYR PRO LYS ASP PRO MET ALA SEQRES 8 A 230 ARG ALA VAL VAL ASN HIS ARG LEU CYS PHE ASN LEU SER SEQRES 9 A 230 THR TYR TYR ARG TYR ILE SER GLU TYR THR LEU ALA PRO SEQRES 10 A 230 MET PHE PHE ASP TYR GLN ARG THR PRO LEU GLY LEU LYS SEQRES 11 A 230 LYS THR HIS ILE ALA LEU ASP ASN PHE ASN THR TYR LEU SEQRES 12 A 230 LYS LEU LEU GLY LYS LYS TYR ALA ALA GLY GLU THR VAL SEQRES 13 A 230 THR ILE ALA ASP PHE GLN LEU VAL THR ALA THR MET CYS SEQRES 14 A 230 LEU GLU ALA ILE ASN PHE ASP ILE SER PRO TRP PRO LEU SEQRES 15 A 230 VAL GLU ASN TRP TYR ASP THR TYR LYS LEU GLU HIS PRO SEQRES 16 A 230 THR LEU TRP LYS ILE VAL GLU GLY GLY MET LYS GLU LEU SEQRES 17 A 230 GLU ALA PHE GLU LYS ASN PRO PRO ASP LEU SER HIS MET SEQRES 18 A 230 ASP HIS PRO ILE HIS PRO VAL ARG LYS SEQRES 1 B 230 MET PRO ILE THR LEU TYR SER VAL SER ASP GLY PRO PRO SEQRES 2 B 230 SER LEU ALA VAL ARG GLN ALA LEU GLU TYR LEU GLY LEU SEQRES 3 B 230 GLU HIS LYS LEU VAL ASN VAL ASP PHE GLY ILE GLY GLU SEQRES 4 B 230 HIS MET THR GLU GLU PHE ALA GLN LYS ASN PRO GLN LYS SEQRES 5 B 230 GLU ILE PRO VAL LEU ASP ASP ASN GLY PHE LEU LEU GLY SEQRES 6 B 230 GLU SER ASN ALA ILE LEU GLN TYR LEU ALA GLU ARG TYR SEQRES 7 B 230 GLY LYS ASP ASP THR ILE TYR PRO LYS ASP PRO MET ALA SEQRES 8 B 230 ARG ALA VAL VAL ASN HIS ARG LEU CYS PHE ASN LEU SER SEQRES 9 B 230 THR TYR TYR ARG TYR ILE SER GLU TYR THR LEU ALA PRO SEQRES 10 B 230 MET PHE PHE ASP TYR GLN ARG THR PRO LEU GLY LEU LYS SEQRES 11 B 230 LYS THR HIS ILE ALA LEU ASP ASN PHE ASN THR TYR LEU SEQRES 12 B 230 LYS LEU LEU GLY LYS LYS TYR ALA ALA GLY GLU THR VAL SEQRES 13 B 230 THR ILE ALA ASP PHE GLN LEU VAL THR ALA THR MET CYS SEQRES 14 B 230 LEU GLU ALA ILE ASN PHE ASP ILE SER PRO TRP PRO LEU SEQRES 15 B 230 VAL GLU ASN TRP TYR ASP THR TYR LYS LEU GLU HIS PRO SEQRES 16 B 230 THR LEU TRP LYS ILE VAL GLU GLY GLY MET LYS GLU LEU SEQRES 17 B 230 GLU ALA PHE GLU LYS ASN PRO PRO ASP LEU SER HIS MET SEQRES 18 B 230 ASP HIS PRO ILE HIS PRO VAL ARG LYS HET GSH A 301 35 HETNAM GSH GLUTATHIONE FORMUL 3 GSH C10 H17 N3 O6 S FORMUL 4 HOH *317(H2 O) HELIX 1 AA1 GLY A 11 LEU A 24 1 14 HELIX 2 AA2 PHE A 35 ALA A 46 5 12 HELIX 3 AA3 GLU A 66 TYR A 78 1 13 HELIX 4 AA4 ASP A 88 THR A 105 1 18 HELIX 5 AA5 THR A 105 LEU A 115 1 11 HELIX 6 AA6 LEU A 115 PHE A 120 1 6 HELIX 7 AA7 THR A 125 GLY A 147 1 23 HELIX 8 AA8 THR A 157 ILE A 173 1 17 HELIX 9 AA9 TRP A 180 HIS A 194 1 15 HELIX 10 AB1 HIS A 194 GLU A 212 1 19 HELIX 11 AB2 GLY B 11 GLY B 25 1 15 HELIX 12 AB3 HIS B 40 ALA B 46 1 7 HELIX 13 AB4 GLU B 66 TYR B 78 1 13 HELIX 14 AB5 ASP B 88 THR B 105 1 18 HELIX 15 AB6 THR B 105 LEU B 115 1 11 HELIX 16 AB7 LEU B 115 PHE B 120 1 6 HELIX 17 AB8 THR B 125 GLY B 147 1 23 HELIX 18 AB9 THR B 157 ILE B 173 1 17 HELIX 19 AC1 TRP B 180 HIS B 194 1 15 HELIX 20 AC2 HIS B 194 GLU B 212 1 19 SHEET 1 AA1 4 LYS A 29 ASN A 32 0 SHEET 2 AA1 4 ILE A 3 SER A 7 1 N SER A 7 O VAL A 31 SHEET 3 AA1 4 VAL A 56 ASP A 59 -1 O ASP A 58 N THR A 4 SHEET 4 AA1 4 PHE A 62 GLY A 65 -1 O LEU A 64 N LEU A 57 SHEET 1 AA2 4 LYS B 29 ASN B 32 0 SHEET 2 AA2 4 ILE B 3 SER B 7 1 N LEU B 5 O LYS B 29 SHEET 3 AA2 4 VAL B 56 ASP B 59 -1 O ASP B 58 N THR B 4 SHEET 4 AA2 4 PHE B 62 GLY B 65 -1 O LEU B 64 N LEU B 57 CISPEP 1 ILE A 54 PRO A 55 0 0.20 CISPEP 2 ILE B 54 PRO B 55 0 -4.82 CRYST1 58.452 46.440 87.192 90.00 91.35 90.00 P 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017108 0.000000 0.000403 0.00000 SCALE2 0.000000 0.021533 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011472 0.00000