HEADER VIRAL PROTEIN, HYDROLASE 22-JUL-21 7RKP TITLE THE CRYSTAL STRUCTURE OF I38T MUTANT PA ENDONUCLEASE TITLE 2 (2009/H1N1/CALIFORNIA) IN COMPLEX WITH CYCLIC COMPOUND SJ001034733 CAVEAT 7RKP 5Y1 A 402 HAS WRONG CHIRALITY AT ATOM C22 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE ACIDIC PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RNA-DIRECTED RNA POLYMERASE SUBUNIT P2,RNA-DIRECTED RNA COMPND 5 POLYMERASE SUBUNIT P2; COMPND 6 EC: 3.1.-.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS (STRAIN SWL SOURCE 3 A/CALIFORNIA/04/2009 H1N1); SOURCE 4 ORGANISM_TAXID: 641501; SOURCE 5 STRAIN: SWL A/CALIFORNIA/04/2009 H1N1; SOURCE 6 CELL_LINE: 2009; SOURCE 7 GENE: PA; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS NUCLEASE, INFLUENZA, INHIBITOR RESISTANCE, VIRAL PROTEIN-INHIBITOR KEYWDS 2 COMPLEX, HYDROLASE, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.G.CUYPERS,J.P.SLAVISH,Z.RANKOVIC,S.W.WHITE REVDAT 4 25-OCT-23 7RKP 1 REMARK REVDAT 3 11-OCT-23 7RKP 1 JRNL REVDAT 2 29-MAR-23 7RKP 1 JRNL REVDAT 1 27-JUL-22 7RKP 0 JRNL AUTH P.J.SLAVISH,M.G.CUYPERS,M.A.RIMMER,A.ABDOLVAHABI,T.JEEVAN, JRNL AUTH 2 G.KUMAR,J.A.JARUSIEWICZ,S.VAITHIYALINGAM,J.C.JONES, JRNL AUTH 3 J.J.BOWLING,J.E.PRICE,R.M.DUBOIS,J.MIN,R.J.WEBBY,Z.RANKOVIC, JRNL AUTH 4 S.W.WHITE JRNL TITL CHEMICAL SCAFFOLD RECYCLING: STRUCTURE-GUIDED CONVERSION OF JRNL TITL 2 AN HIV INTEGRASE INHIBITOR INTO A POTENT INFLUENZA VIRUS JRNL TITL 3 RNA-DEPENDENT RNA POLYMERASE INHIBITOR DESIGNED TO MINIMIZE JRNL TITL 4 RESISTANCE POTENTIAL. JRNL REF EUR.J.MED.CHEM. V. 247 15035 2023 JRNL REFN ISSN 0223-5234 JRNL PMID 36603507 JRNL DOI 10.1016/J.EJMECH.2022.115035 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.J.SLAVISH,M.G.CUYPERS,M.A.RIMMER,A.ABDOLVAHABI,T.JEEVAN, REMARK 1 AUTH 2 G.KUMAR,J.A.JARUSIEWICZ,S.VAITHIYALINGAM,J.C.JONES, REMARK 1 AUTH 3 J.J.BOWLING,J.E.PRICE,R.M.DUBOIS,J.MIN,R.J.WEBBY,Z.RANKOVIC, REMARK 1 AUTH 4 S.W.WHITE REMARK 1 TITL CHEMICAL SCAFFOLD RECYCLING: STRUCTURE-GUIDED CONVERSION OF REMARK 1 TITL 2 AN HIV INTEGRASE INHIBITOR INTO A POTENT INFLUENZA VIRUS REMARK 1 TITL 3 RNA-DEPENDENT RNA POLYMERASE INHIBITOR DESIGNED TO MINIMIZE REMARK 1 TITL 4 RESISTANCE POTENTIAL. REMARK 1 REF EUR.J.MED.CHEM. V. 247 15035 2023 REMARK 1 REFN ISSN 0223-5234 REMARK 1 PMID 36603507 REMARK 1 DOI 10.1016/J.EJMECH.2022.115035 REMARK 2 REMARK 2 RESOLUTION. 2.36 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.36 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 11492 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 590 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.9200 - 3.7500 0.99 2848 152 0.1982 0.2126 REMARK 3 2 3.7500 - 2.9700 1.00 2723 142 0.2384 0.2997 REMARK 3 3 2.9700 - 2.6000 1.00 2706 139 0.2930 0.3276 REMARK 3 4 2.6000 - 2.3600 0.99 2625 157 0.2985 0.3186 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.368 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 55.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 1578 REMARK 3 ANGLE : 0.565 2133 REMARK 3 CHIRALITY : 0.039 220 REMARK 3 PLANARITY : 0.003 270 REMARK 3 DIHEDRAL : 8.473 231 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -3 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.9965 34.1726 -4.0349 REMARK 3 T TENSOR REMARK 3 T11: 0.5210 T22: 0.6402 REMARK 3 T33: 0.4672 T12: -0.0750 REMARK 3 T13: -0.0207 T23: -0.2592 REMARK 3 L TENSOR REMARK 3 L11: 2.3612 L22: 6.8754 REMARK 3 L33: 3.2720 L12: -1.5294 REMARK 3 L13: 0.3459 L23: -2.2016 REMARK 3 S TENSOR REMARK 3 S11: -0.3292 S12: -0.1642 S13: -0.1127 REMARK 3 S21: 0.7829 S22: 0.1629 S23: -0.2752 REMARK 3 S31: -0.2763 S32: -0.1707 S33: 0.0499 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 24 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.8407 36.3264 -3.3328 REMARK 3 T TENSOR REMARK 3 T11: 0.5551 T22: 1.1656 REMARK 3 T33: 0.9226 T12: 0.0233 REMARK 3 T13: 0.1197 T23: -0.2059 REMARK 3 L TENSOR REMARK 3 L11: 2.7416 L22: 9.7034 REMARK 3 L33: 3.0442 L12: -4.1058 REMARK 3 L13: 2.5413 L23: -3.1232 REMARK 3 S TENSOR REMARK 3 S11: -0.1704 S12: -0.2254 S13: 0.2871 REMARK 3 S21: 0.5831 S22: 0.3547 S23: 1.1445 REMARK 3 S31: -0.6693 S32: -0.8024 S33: -0.1932 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.1333 41.0275 -16.5169 REMARK 3 T TENSOR REMARK 3 T11: 0.4581 T22: 0.6205 REMARK 3 T33: 0.5484 T12: -0.1095 REMARK 3 T13: -0.1133 T23: -0.2386 REMARK 3 L TENSOR REMARK 3 L11: 0.2464 L22: 3.9144 REMARK 3 L33: 0.8534 L12: -0.3884 REMARK 3 L13: -0.0703 L23: -0.4395 REMARK 3 S TENSOR REMARK 3 S11: -0.1325 S12: 0.0227 S13: 0.1659 REMARK 3 S21: 0.1511 S22: -0.0089 S23: -0.0669 REMARK 3 S31: -0.3985 S32: -0.1052 S33: 0.1374 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.8136 48.5687 -22.8136 REMARK 3 T TENSOR REMARK 3 T11: 0.5805 T22: 0.8165 REMARK 3 T33: 0.5940 T12: -0.0100 REMARK 3 T13: -0.2521 T23: -0.1863 REMARK 3 L TENSOR REMARK 3 L11: 1.8683 L22: 5.0225 REMARK 3 L33: 1.9812 L12: 0.7986 REMARK 3 L13: 0.9613 L23: 0.9153 REMARK 3 S TENSOR REMARK 3 S11: -0.2665 S12: 0.4467 S13: 0.3529 REMARK 3 S21: -0.7154 S22: -0.1154 S23: 0.7717 REMARK 3 S31: -0.3593 S32: -0.8945 S33: 0.1432 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 127 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.8522 34.8534 -27.3958 REMARK 3 T TENSOR REMARK 3 T11: 0.7859 T22: 1.9279 REMARK 3 T33: 0.8523 T12: -0.2467 REMARK 3 T13: -0.2762 T23: -0.1655 REMARK 3 L TENSOR REMARK 3 L11: 2.8614 L22: 3.3076 REMARK 3 L33: 2.2209 L12: 0.4333 REMARK 3 L13: 1.6504 L23: 1.1104 REMARK 3 S TENSOR REMARK 3 S11: -0.0066 S12: 0.0805 S13: -0.3018 REMARK 3 S21: -0.6722 S22: -0.0179 S23: 0.8168 REMARK 3 S31: 0.0684 S32: -0.1330 S33: -0.2392 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 195 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.0292 30.1630 -22.3237 REMARK 3 T TENSOR REMARK 3 T11: 0.5503 T22: 0.7627 REMARK 3 T33: 0.5681 T12: -0.1739 REMARK 3 T13: -0.0343 T23: -0.2913 REMARK 3 L TENSOR REMARK 3 L11: 0.7256 L22: 4.6818 REMARK 3 L33: 3.7801 L12: 0.2354 REMARK 3 L13: -0.1472 L23: -1.5829 REMARK 3 S TENSOR REMARK 3 S11: -0.0708 S12: 0.3368 S13: -0.2302 REMARK 3 S21: -0.4288 S22: 0.0435 S23: 0.6273 REMARK 3 S31: 0.6231 S32: -0.6769 S33: 0.0161 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7RKP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1000258445. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11501 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.360 REMARK 200 RESOLUTION RANGE LOW (A) : 74.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.04200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.36 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5VPT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.8, 1 M AMMONIUM REMARK 280 SULFATE, 10 MM MNCL2, 10 MM MGCL2, 0.5% PVP K15, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 44.84500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 44.84500 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 66.57800 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 44.84500 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 44.84500 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 66.57800 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 44.84500 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 44.84500 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 66.57800 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 44.84500 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 44.84500 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 66.57800 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 44.84500 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 44.84500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 66.57800 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 44.84500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 44.84500 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 66.57800 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 44.84500 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 44.84500 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 66.57800 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 44.84500 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 44.84500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 66.57800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -226.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 89.69000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 89.69000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 89.69000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 89.69000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A 196 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A -3 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 34 CE NZ REMARK 470 SER A 53 OG REMARK 470 LYS A 73 CE NZ REMARK 470 LYS A 104 CG CD CE NZ REMARK 470 LYS A 113 CE NZ REMARK 470 LYS A 137 CG CD CE NZ REMARK 470 LYS A 139 CG CD CE NZ REMARK 470 GLU A 141 CG CD OE1 OE2 REMARK 470 LYS A 142 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 125 O HOH A 501 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 125 -164.99 -101.78 REMARK 500 SER A 140 91.42 -66.04 REMARK 500 THR A 162 -69.84 63.82 REMARK 500 SER A 194 -15.22 -147.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 QQ4 A 401 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 403 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 41 NE2 REMARK 620 2 ASP A 108 OD2 102.8 REMARK 620 3 GLU A 119 OE2 166.3 89.1 REMARK 620 4 ILE A 120 O 75.1 95.6 97.3 REMARK 620 5 5Y1 A 402 O4 97.5 98.6 87.2 165.2 REMARK 620 6 5Y1 A 402 O5 81.2 175.7 87.1 86.8 79.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 404 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 80 OE2 REMARK 620 2 ASP A 108 OD1 92.2 REMARK 620 3 5Y1 A 402 O1 91.7 162.5 REMARK 620 4 5Y1 A 402 O4 110.3 88.3 74.3 REMARK 620 5 HOH A 503 O 92.6 95.6 101.2 156.6 REMARK 620 6 HOH A 504 O 173.8 93.0 84.4 73.3 83.4 REMARK 620 N 1 2 3 4 5 DBREF 7RKP A 1 50 UNP C3W5S0 C3W5S0_I09A0 1 50 DBREF 7RKP A 73 196 UNP C3W5S0 C3W5S0_I09A0 73 196 SEQADV 7RKP MET A -19 UNP C3W5S0 EXPRESSION TAG SEQADV 7RKP GLY A -18 UNP C3W5S0 EXPRESSION TAG SEQADV 7RKP SER A -17 UNP C3W5S0 EXPRESSION TAG SEQADV 7RKP SER A -16 UNP C3W5S0 EXPRESSION TAG SEQADV 7RKP HIS A -15 UNP C3W5S0 EXPRESSION TAG SEQADV 7RKP HIS A -14 UNP C3W5S0 EXPRESSION TAG SEQADV 7RKP HIS A -13 UNP C3W5S0 EXPRESSION TAG SEQADV 7RKP HIS A -12 UNP C3W5S0 EXPRESSION TAG SEQADV 7RKP HIS A -11 UNP C3W5S0 EXPRESSION TAG SEQADV 7RKP HIS A -10 UNP C3W5S0 EXPRESSION TAG SEQADV 7RKP SER A -9 UNP C3W5S0 EXPRESSION TAG SEQADV 7RKP SER A -8 UNP C3W5S0 EXPRESSION TAG SEQADV 7RKP GLY A -7 UNP C3W5S0 EXPRESSION TAG SEQADV 7RKP LEU A -6 UNP C3W5S0 EXPRESSION TAG SEQADV 7RKP VAL A -5 UNP C3W5S0 EXPRESSION TAG SEQADV 7RKP PRO A -4 UNP C3W5S0 EXPRESSION TAG SEQADV 7RKP ARG A -3 UNP C3W5S0 EXPRESSION TAG SEQADV 7RKP GLY A -2 UNP C3W5S0 EXPRESSION TAG SEQADV 7RKP SER A -1 UNP C3W5S0 EXPRESSION TAG SEQADV 7RKP HIS A 0 UNP C3W5S0 EXPRESSION TAG SEQADV 7RKP THR A 38 UNP C3W5S0 ILE 38 ENGINEERED MUTATION SEQADV 7RKP GLY A 51 UNP C3W5S0 LINKER SEQADV 7RKP GLY A 52 UNP C3W5S0 LINKER SEQADV 7RKP SER A 53 UNP C3W5S0 LINKER SEQRES 1 A 197 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 197 LEU VAL PRO ARG GLY SER HIS MET GLU ASP PHE VAL ARG SEQRES 3 A 197 GLN CYS PHE ASN PRO MET ILE VAL GLU LEU ALA GLU LYS SEQRES 4 A 197 ALA MET LYS GLU TYR GLY GLU ASP PRO LYS ILE GLU THR SEQRES 5 A 197 ASN LYS PHE ALA ALA THR CYS THR HIS LEU GLU VAL CYS SEQRES 6 A 197 PHE MET TYR SER ASP GLY GLY SER LYS HIS ARG PHE GLU SEQRES 7 A 197 ILE ILE GLU GLY ARG ASP ARG ILE MET ALA TRP THR VAL SEQRES 8 A 197 VAL ASN SER ILE CYS ASN THR THR GLY VAL GLU LYS PRO SEQRES 9 A 197 LYS PHE LEU PRO ASP LEU TYR ASP TYR LYS GLU ASN ARG SEQRES 10 A 197 PHE ILE GLU ILE GLY VAL THR ARG ARG GLU VAL HIS ILE SEQRES 11 A 197 TYR TYR LEU GLU LYS ALA ASN LYS ILE LYS SER GLU LYS SEQRES 12 A 197 THR HIS ILE HIS ILE PHE SER PHE THR GLY GLU GLU MET SEQRES 13 A 197 ALA THR LYS ALA ASP TYR THR LEU ASP GLU GLU SER ARG SEQRES 14 A 197 ALA ARG ILE LYS THR ARG LEU PHE THR ILE ARG GLN GLU SEQRES 15 A 197 MET ALA SER ARG SER LEU TRP ASP SER PHE ARG GLN SER SEQRES 16 A 197 GLU ARG HET QQ4 A 401 41 HET 5Y1 A 402 31 HET MN A 403 1 HET MN A 404 1 HET SO4 A 405 5 HET SO4 A 406 5 HET SO4 A 407 5 HETNAM QQ4 HEXA VINYLPYRROLIDONE K15 HETNAM 5Y1 (5R)-5-HYDROXY-16,21-DIOXA-3,8,28- HETNAM 2 5Y1 TRIAZATETRACYCLO[20.3.1.1~2,6~.1~11,15~]OCTACOSA- HETNAM 3 5Y1 1(26),2,6(28),11(27),12,14,22,24-OCTAENE-4,7-DIONE HETNAM MN MANGANESE (II) ION HETNAM SO4 SULFATE ION HETSYN QQ4 1,1',1'',1''',1'''',1'''''-[(3R,5R,7R,9S,11R)-DODECANE- HETSYN 2 QQ4 1,3,5,7,9,11-HEXAYL]HEXA(PYRROLIDIN-2-ONE) FORMUL 2 QQ4 C36 H56 N6 O6 FORMUL 3 5Y1 C23 H23 N3 O5 FORMUL 4 MN 2(MN 2+) FORMUL 6 SO4 3(O4 S 2-) FORMUL 9 HOH *5(H2 O) HELIX 1 AA1 SER A -1 PHE A 9 1 11 HELIX 2 AA2 ASN A 10 TYR A 24 1 15 HELIX 3 AA3 GLU A 31 GLY A 52 1 22 HELIX 4 AA4 ASP A 83 GLY A 99 1 17 HELIX 5 AA5 GLU A 126 ILE A 138 1 13 HELIX 6 AA6 LYS A 158 ASP A 160 5 3 HELIX 7 AA7 ASP A 164 ARG A 185 1 22 HELIX 8 AA8 LEU A 187 GLN A 193 1 7 SHEET 1 AA1 5 PHE A 76 ILE A 78 0 SHEET 2 AA1 5 LEU A 109 ASP A 111 -1 O TYR A 110 N GLU A 77 SHEET 3 AA1 5 ARG A 116 THR A 123 -1 O ARG A 116 N ASP A 111 SHEET 4 AA1 5 HIS A 144 SER A 149 1 O HIS A 144 N GLU A 119 SHEET 5 AA1 5 GLU A 154 ALA A 156 -1 O MET A 155 N ILE A 147 LINK NE2 HIS A 41 MN MN A 403 1555 1555 2.25 LINK OE2 GLU A 80 MN MN A 404 1555 1555 2.42 LINK OD2 ASP A 108 MN MN A 403 1555 1555 2.01 LINK OD1 ASP A 108 MN MN A 404 1555 1555 2.04 LINK OE2 GLU A 119 MN MN A 403 1555 1555 2.13 LINK O ILE A 120 MN MN A 403 1555 1555 2.15 LINK O4 5Y1 A 402 MN MN A 403 1555 1555 2.04 LINK O5 5Y1 A 402 MN MN A 403 1555 1555 2.11 LINK O1 5Y1 A 402 MN MN A 404 1555 1555 1.72 LINK O4 5Y1 A 402 MN MN A 404 1555 1555 2.22 LINK MN MN A 404 O HOH A 503 1555 1555 2.28 LINK MN MN A 404 O HOH A 504 1555 1555 2.02 CRYST1 89.690 89.690 133.156 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011150 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011150 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007510 0.00000