HEADER LIGASE 26-JUL-21 7RM7 TITLE THE X-RAY CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF STAPHYLOCOCCUS TITLE 2 AUREUS FATTY ACID KINASE A (FAKA, RESIDUES 1-208) IN COMPLEX WITH ADP TITLE 3 TO 1.025 ANGSTROM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: FATTY ACID KINASE A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FATTY ACID KINASE A, PHOSPHORYLATION, FATTY ACID, N-TERMINUS DOMAIN, KEYWDS 2 LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR M.G.CUYPERS,C.SUBRAMANIAN,C.O.ROCK,S.W.WHITE REVDAT 1 02-MAR-22 7RM7 0 JRNL AUTH M.G.CUYPERS,C.SUBRAMANIAN,C.O.ROCK,S.W.WHITE JRNL TITL THE X-RAY CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF JRNL TITL 2 STAPHYLOCOCCUS AUREUS FATTY ACID KINASE A (FAKA, RESIDUES JRNL TITL 3 1-208) IN COMPLEX WITH ADP TO 1.025 ANGSTROM RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 95720 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.118 REMARK 3 FREE R VALUE : 0.144 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.996 REMARK 3 FREE R VALUE TEST SET COUNT : 4782 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.03 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5081 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 72.64 REMARK 3 BIN R VALUE (WORKING SET) : 0.2930 REMARK 3 BIN FREE R VALUE SET COUNT : 261 REMARK 3 BIN FREE R VALUE : 0.3120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1658 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 361 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 8.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.13400 REMARK 3 B22 (A**2) : -0.38000 REMARK 3 B33 (A**2) : 1.51400 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.022 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.024 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.020 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.911 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.985 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.978 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1906 ; 0.017 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 1814 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2605 ; 2.046 ; 1.623 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4219 ; 0.670 ; 1.565 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 265 ; 5.361 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 81 ;37.682 ;26.173 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 349 ;11.704 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;28.729 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 251 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2298 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 393 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 495 ; 0.274 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 96 ; 0.292 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1000 ; 0.182 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 229 ; 0.258 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 7 ; 0.092 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1000 ; 5.568 ; 1.151 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 999 ; 5.569 ; 1.149 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1285 ; 6.157 ; 1.707 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1286 ; 6.155 ; 1.708 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 906 ; 6.263 ; 1.532 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 906 ; 6.263 ; 1.532 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1320 ; 7.493 ; 2.156 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1321 ; 7.490 ; 2.156 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3720 ;14.257 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -14 A 207 REMARK 3 ORIGIN FOR THE GROUP (A): 14.9801 5.2362 -12.5135 REMARK 3 T TENSOR REMARK 3 T11: 0.0196 T22: 0.0153 REMARK 3 T33: 0.0005 T12: 0.0006 REMARK 3 T13: -0.0002 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.0655 L22: 0.0374 REMARK 3 L33: 0.0965 L12: 0.0079 REMARK 3 L13: 0.0200 L23: -0.0074 REMARK 3 S TENSOR REMARK 3 S11: 0.0009 S12: 0.0050 S13: -0.0057 REMARK 3 S21: -0.0006 S22: 0.0014 S23: 0.0002 REMARK 3 S31: 0.0025 S32: 0.0033 S33: -0.0023 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 PHASING WAS PERFORMED USING THIS DATA SET AS A REMOTE WAVELENGTH REMARK 3 COUPLED WITH THE SAD DATA FROM A COBALT-DERIVATIZED CRYSTAL (PDB REMARK 3 ID 7RZK). REMARK 3 HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT FILE REMARK 4 REMARK 4 7RM7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1000258519. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 95789 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.025 REMARK 200 RESOLUTION RANGE LOW (A) : 34.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 70.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXDE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MGCL2, 0.1M TRIS HCL PH8.5, REMARK 280 30%PEG4000 (JCSG CORE IV #21), VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.33250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.59750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.69950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.59750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.33250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.69950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 GLU A 208 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A -14 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 107 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 196 O HOH A 401 1.65 REMARK 500 OE2 GLU A 196 O HOH A 402 1.75 REMARK 500 OE1 GLU A 196 O HOH A 403 1.86 REMARK 500 O HOH A 419 O HOH A 601 1.93 REMARK 500 OD1 ASN A 165 O HOH A 404 2.06 REMARK 500 OE1 GLN A 114 O HOH A 405 2.10 REMARK 500 O HOH A 467 O HOH A 724 2.15 REMARK 500 O HOH A 533 O HOH A 651 2.15 REMARK 500 O LEU A -6 O HOH A 406 2.16 REMARK 500 CD1 LEU A 108 O HOH A 612 2.16 REMARK 500 O HOH A 421 O HOH A 614 2.17 REMARK 500 O HOH A 473 O HOH A 669 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 518 O HOH A 653 2555 1.63 REMARK 500 OE2 GLU A 169 O HOH A 424 2655 1.73 REMARK 500 OD1 ASN A 165 O HOH A 424 2655 1.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 66 CD GLU A 66 OE2 0.069 REMARK 500 GLU A 145 CD GLU A 145 OE1 0.068 REMARK 500 GLU A 180 CD GLU A 180 OE1 0.097 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 77 O - C - N ANGL. DEV. = -31.0 DEGREES REMARK 500 ARG A 92 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 59 58.21 -145.06 REMARK 500 ASN A 59 75.41 -155.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 92 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 MET A 77 -33.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 750 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A 751 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A 752 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH A 753 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH A 754 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH A 755 DISTANCE = 6.60 ANGSTROMS REMARK 525 HOH A 756 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH A 757 DISTANCE = 6.64 ANGSTROMS REMARK 525 HOH A 758 DISTANCE = 6.81 ANGSTROMS REMARK 525 HOH A 759 DISTANCE = 7.62 ANGSTROMS REMARK 525 HOH A 760 DISTANCE = 7.63 ANGSTROMS REMARK 525 HOH A 761 DISTANCE = 8.30 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 32 OD1 REMARK 620 2 ASP A 38 OD1 85.3 REMARK 620 3 ASP A 40 OD1 90.8 88.3 REMARK 620 4 ADP A 302 O3B 177.1 97.4 90.5 REMARK 620 5 ADP A 302 O2A 86.8 172.1 92.0 90.5 REMARK 620 6 HOH A 495 O 91.5 88.3 175.8 87.4 91.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 304 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 38 OD2 REMARK 620 2 ASP A 40 OD2 93.0 REMARK 620 3 ADP A 302 O3B 95.5 93.1 REMARK 620 4 HOH A 472 O 176.9 89.5 86.1 REMARK 620 5 HOH A 484 O 87.3 82.0 174.4 91.3 REMARK 620 6 HOH A 555 O 88.6 170.8 95.8 88.6 89.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 307 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 138 OD1 REMARK 620 2 GLN A 141 OE1 91.4 REMARK 620 3 HOH A 544 O 86.3 170.1 REMARK 620 4 HOH A 561 O 97.8 92.7 97.1 REMARK 620 5 HOH A 661 O 156.1 101.3 77.8 101.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 305 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 438 O REMARK 620 2 HOH A 480 O 93.0 REMARK 620 3 HOH A 682 O 100.9 150.1 REMARK 620 4 HOH A 706 O 91.7 74.9 78.2 REMARK 620 5 HOH A 721 O 169.6 95.3 74.7 96.5 REMARK 620 6 HOH A 750 O 107.4 83.2 116.9 151.7 67.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 306 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 446 O REMARK 620 2 HOH A 466 O 91.5 REMARK 620 3 HOH A 680 O 80.1 84.8 REMARK 620 4 HOH A 725 O 166.8 98.7 109.0 REMARK 620 5 HOH A 727 O 90.2 93.5 170.1 81.0 REMARK 620 6 HOH A 747 O 92.2 175.4 98.4 77.2 83.9 REMARK 620 N 1 2 3 4 5 DBREF 7RM7 A 1 208 UNP Q7A5Z4 Y1069_STAAN 1 208 SEQADV 7RM7 MET A -19 UNP Q7A5Z4 INITIATING METHIONINE SEQADV 7RM7 GLY A -18 UNP Q7A5Z4 EXPRESSION TAG SEQADV 7RM7 SER A -17 UNP Q7A5Z4 EXPRESSION TAG SEQADV 7RM7 SER A -16 UNP Q7A5Z4 EXPRESSION TAG SEQADV 7RM7 HIS A -15 UNP Q7A5Z4 EXPRESSION TAG SEQADV 7RM7 HIS A -14 UNP Q7A5Z4 EXPRESSION TAG SEQADV 7RM7 HIS A -13 UNP Q7A5Z4 EXPRESSION TAG SEQADV 7RM7 HIS A -12 UNP Q7A5Z4 EXPRESSION TAG SEQADV 7RM7 HIS A -11 UNP Q7A5Z4 EXPRESSION TAG SEQADV 7RM7 HIS A -10 UNP Q7A5Z4 EXPRESSION TAG SEQADV 7RM7 SER A -9 UNP Q7A5Z4 EXPRESSION TAG SEQADV 7RM7 SER A -8 UNP Q7A5Z4 EXPRESSION TAG SEQADV 7RM7 GLY A -7 UNP Q7A5Z4 EXPRESSION TAG SEQADV 7RM7 LEU A -6 UNP Q7A5Z4 EXPRESSION TAG SEQADV 7RM7 VAL A -5 UNP Q7A5Z4 EXPRESSION TAG SEQADV 7RM7 PRO A -4 UNP Q7A5Z4 EXPRESSION TAG SEQADV 7RM7 ARG A -3 UNP Q7A5Z4 EXPRESSION TAG SEQADV 7RM7 GLY A -2 UNP Q7A5Z4 EXPRESSION TAG SEQADV 7RM7 SER A -1 UNP Q7A5Z4 EXPRESSION TAG SEQADV 7RM7 HIS A 0 UNP Q7A5Z4 EXPRESSION TAG SEQRES 1 A 228 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 228 LEU VAL PRO ARG GLY SER HIS MET ILE SER LYS ILE ASN SEQRES 3 A 228 GLY LYS LEU PHE ALA ASP MET ILE ILE GLN GLY ALA GLN SEQRES 4 A 228 ASN LEU SER ASN ASN ALA ASP LEU VAL ASP SER LEU ASN SEQRES 5 A 228 VAL TYR PRO VAL PRO ASP GLY ASP THR GLY THR ASN MET SEQRES 6 A 228 ASN LEU THR MET THR SER GLY ARG GLU GLU VAL GLU ASN SEQRES 7 A 228 ASN LEU SER LYS ASN ILE GLY GLU LEU GLY LYS THR PHE SEQRES 8 A 228 SER LYS GLY LEU LEU MET GLY ALA ARG GLY ASN SER GLY SEQRES 9 A 228 VAL ILE LEU SER GLN LEU PHE ARG GLY PHE CYS LYS ASN SEQRES 10 A 228 ILE GLU SER GLU SER GLU ILE ASN SER LYS LEU LEU ALA SEQRES 11 A 228 GLU SER PHE GLN ALA GLY VAL GLU THR ALA TYR LYS ALA SEQRES 12 A 228 VAL MET LYS PRO VAL GLU GLY THR ILE LEU THR VAL ALA SEQRES 13 A 228 LYS ASP ALA ALA GLN ALA ALA ILE GLU LYS ALA ASN ASN SEQRES 14 A 228 THR GLU ASP CYS ILE GLU LEU MET GLU TYR ILE ILE VAL SEQRES 15 A 228 LYS ALA ASN GLU SER LEU GLU ASN THR PRO ASN LEU LEU SEQRES 16 A 228 ALA VAL LEU LYS GLU VAL GLY VAL VAL ASP SER GLY GLY SEQRES 17 A 228 LYS GLY LEU LEU CYS VAL TYR GLU GLY PHE LEU LYS ALA SEQRES 18 A 228 LEU LYS GLY GLU LYS VAL GLU HET GOL A 301 13 HET ADP A 302 37 HET MG A 303 1 HET MG A 304 1 HET MG A 305 1 HET MG A 306 1 HET MG A 307 1 HETNAM GOL GLYCEROL HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 MG 5(MG 2+) FORMUL 9 HOH *361(H2 O) HELIX 1 AA1 ASN A 6 ASN A 24 1 19 HELIX 2 AA2 ASN A 24 ASN A 32 1 9 HELIX 3 AA3 ASP A 40 ASN A 58 1 19 HELIX 4 AA4 ASN A 63 MET A 77 1 15 HELIX 5 AA5 ARG A 80 ILE A 98 1 19 HELIX 6 AA6 ASN A 105 VAL A 124 1 20 HELIX 7 AA7 THR A 131 ASN A 148 1 18 HELIX 8 AA8 ASP A 152 THR A 171 1 20 HELIX 9 AA9 PRO A 172 LEU A 174 5 3 HELIX 10 AB1 LEU A 175 GLY A 182 1 8 HELIX 11 AB2 ASP A 185 LYS A 203 1 19 LINK OD1 ASN A 32 MG MG A 303 1555 1555 2.10 LINK OD1 ASP A 38 MG MG A 303 1555 1555 2.01 LINK OD2 ASP A 38 MG MG A 304 1555 1555 2.05 LINK OD1 ASP A 40 MG MG A 303 1555 1555 1.99 LINK OD2 ASP A 40 MG MG A 304 1555 1555 2.04 LINK OD1 ASP A 138 MG MG A 307 1555 1555 2.18 LINK OE1BGLN A 141 MG MG A 307 1555 1555 1.84 LINK O3B ADP A 302 MG MG A 303 1555 1555 2.12 LINK O2A ADP A 302 MG MG A 303 1555 1555 2.05 LINK O3B ADP A 302 MG MG A 304 1555 1555 2.09 LINK MG MG A 303 O HOH A 495 1555 1555 2.12 LINK MG MG A 304 O HOH A 472 1555 1555 2.08 LINK MG MG A 304 O HOH A 484 1555 1555 2.12 LINK MG MG A 304 O HOH A 555 1555 1555 2.04 LINK MG MG A 305 O HOH A 438 1555 1555 2.27 LINK MG MG A 305 O HOH A 480 1555 1555 1.94 LINK MG MG A 305 O HOH A 682 1555 1555 1.84 LINK MG MG A 305 O HOH A 706 1555 3644 2.49 LINK MG MG A 305 O HOH A 721 1555 1555 1.95 LINK MG MG A 305 O HOH A 750 1555 3644 2.79 LINK MG MG A 306 O HOH A 446 1555 1555 2.16 LINK MG MG A 306 O HOH A 466 1555 1555 1.90 LINK MG MG A 306 O HOH A 680 1555 1555 2.00 LINK MG MG A 306 O HOH A 725 1555 1555 2.14 LINK MG MG A 306 O HOH A 727 1555 1555 1.94 LINK MG MG A 306 O HOH A 747 1555 1555 2.11 LINK MG MG A 307 O HOH A 544 1555 1555 1.95 LINK MG MG A 307 O HOH A 561 1555 1555 2.11 LINK MG MG A 307 O HOH A 661 1555 1555 2.72 CISPEP 1 TYR A 34 PRO A 35 0 -1.95 CRYST1 42.665 57.399 81.195 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023438 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017422 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012316 0.00000