HEADER STRUCTURAL PROTEIN 26-JUL-21 7RM8 TITLE SOLUTION NMR STRUCTURE OF PDLIM7 PDZ BOUND TO SNX17 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOFORM 4 OF PDZ AND LIM DOMAIN PROTEIN 7,SORTING NEXIN-17 COMPND 3 FUSION; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: LIM MINERALIZATION PROTEIN,LMP,PROTEIN ENIGMA; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PDLIM7, ENIGMA, SNX17, KIAA0064; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS STRUCTURAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.D.HEALY,B.M.COLLINS,M.MOBLI REVDAT 4 15-MAY-24 7RM8 1 REMARK REVDAT 3 14-DEC-22 7RM8 1 JRNL REVDAT 2 09-NOV-22 7RM8 1 JRNL REVDAT 1 31-AUG-22 7RM8 0 JRNL AUTH M.D.HEALY,J.SACHARZ,K.E.MCNALLY,C.MCCONVILLE,V.A.TILLU, JRNL AUTH 2 R.J.HALL,M.CHILTON,P.J.CULLEN,M.MOBLI,R.GHAI,D.A.STROUD, JRNL AUTH 3 B.M.COLLINS JRNL TITL PROTEOMIC IDENTIFICATION AND STRUCTURAL BASIS FOR THE JRNL TITL 2 INTERACTION BETWEEN SORTING NEXIN SNX17 AND PDLIM FAMILY JRNL TITL 3 PROTEINS. JRNL REF STRUCTURE V. 30 1590 2022 JRNL REFN ISSN 0969-2126 JRNL PMID 36302387 JRNL DOI 10.1016/J.STR.2022.10.001 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CCPNMR ANALYSIS 3 REMARK 3 AUTHORS : CCPN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7RM8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1000258456. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.8 REMARK 210 IONIC STRENGTH : 75 MM NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM [U-13C; U-15N] REMARK 210 PDLIM7_SNX17_FUSION, 95% H2O/5% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HNCO; 3D HBHA(CO)NH; 3D H(CCO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 3.98.13, CCPNMR ANALYSIS 3 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 PRO A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 87 -74.39 -56.92 REMARK 500 1 ALA A 88 -175.91 -172.26 REMARK 500 1 ALA A 90 -176.85 -173.56 REMARK 500 1 ASN A 99 98.44 -67.81 REMARK 500 1 ALA A 101 34.61 -152.32 REMARK 500 1 GLU A 103 128.54 -174.86 REMARK 500 2 ALA A 86 50.46 -100.92 REMARK 500 2 ALA A 101 34.07 -146.95 REMARK 500 2 GLU A 103 129.17 -174.94 REMARK 500 3 ALA A 101 34.85 -153.81 REMARK 500 3 GLU A 103 128.73 -175.06 REMARK 500 4 ALA A 86 54.40 -111.85 REMARK 500 4 ALA A 90 -173.22 -66.43 REMARK 500 4 ALA A 101 34.61 -148.62 REMARK 500 4 GLU A 103 128.28 -176.06 REMARK 500 5 ALA A 86 39.20 -94.25 REMARK 500 5 ALA A 101 33.88 -146.92 REMARK 500 5 GLU A 103 128.88 -175.34 REMARK 500 6 ALA A 86 44.27 -103.05 REMARK 500 6 ALA A 90 174.25 -54.43 REMARK 500 6 ALA A 101 34.15 -148.48 REMARK 500 6 GLU A 103 128.79 -175.09 REMARK 500 7 SER A 87 -68.44 -90.97 REMARK 500 7 ALA A 90 -171.89 -178.06 REMARK 500 7 SER A 95 45.12 -92.47 REMARK 500 7 ASN A 99 98.49 -59.89 REMARK 500 7 ALA A 101 33.41 -152.36 REMARK 500 7 GLU A 103 128.17 -176.62 REMARK 500 8 ALA A 86 53.55 -93.19 REMARK 500 8 ALA A 90 117.88 -170.05 REMARK 500 8 GLU A 103 129.79 -176.94 REMARK 500 9 ALA A 86 48.29 -89.70 REMARK 500 9 SER A 95 68.68 -107.14 REMARK 500 9 ALA A 101 33.80 -145.59 REMARK 500 9 GLU A 103 129.25 -175.20 REMARK 500 10 SER A 87 177.61 -57.41 REMARK 500 10 ALA A 101 34.36 -147.15 REMARK 500 10 GLU A 103 128.91 -175.27 REMARK 500 11 ALA A 90 -174.66 -171.19 REMARK 500 11 ALA A 101 32.42 -142.91 REMARK 500 11 GLU A 103 129.39 -177.00 REMARK 500 12 ALA A 86 51.01 -96.98 REMARK 500 12 ALA A 88 149.64 -177.98 REMARK 500 12 GLU A 103 129.21 -177.19 REMARK 500 13 PRO A 13 -175.64 -69.76 REMARK 500 13 ALA A 86 53.09 -104.69 REMARK 500 13 ALA A 88 130.56 -176.33 REMARK 500 13 ALA A 101 33.56 -146.29 REMARK 500 13 GLU A 103 129.10 -174.45 REMARK 500 13 ASP A 109 155.09 -48.91 REMARK 500 REMARK 500 THIS ENTRY HAS 75 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30937 RELATED DB: BMRB REMARK 900 SOLUTION NMR STRUCTURE OF PDLIM7 PDZ BOUND TO SNX17 PEPTIDE DBREF 7RM8 A 1 84 UNP Q9NR12 PDLI7_HUMAN 1 84 DBREF 7RM8 A 97 110 UNP Q15036 SNX17_HUMAN 457 470 SEQADV 7RM8 GLY A -1 UNP Q9NR12 EXPRESSION TAG SEQADV 7RM8 PRO A 0 UNP Q9NR12 EXPRESSION TAG SEQADV 7RM8 GLY A 85 UNP Q9NR12 LINKER SEQADV 7RM8 ALA A 86 UNP Q9NR12 LINKER SEQADV 7RM8 SER A 87 UNP Q9NR12 LINKER SEQADV 7RM8 ALA A 88 UNP Q9NR12 LINKER SEQADV 7RM8 GLY A 89 UNP Q9NR12 LINKER SEQADV 7RM8 ALA A 90 UNP Q9NR12 LINKER SEQADV 7RM8 SER A 91 UNP Q9NR12 LINKER SEQADV 7RM8 ALA A 92 UNP Q9NR12 LINKER SEQADV 7RM8 GLY A 93 UNP Q9NR12 LINKER SEQADV 7RM8 ALA A 94 UNP Q9NR12 LINKER SEQADV 7RM8 SER A 95 UNP Q9NR12 LINKER SEQADV 7RM8 ALA A 96 UNP Q9NR12 LINKER SEQRES 1 A 112 GLY PRO MET ASP SER PHE LYS VAL VAL LEU GLU GLY PRO SEQRES 2 A 112 ALA PRO TRP GLY PHE ARG LEU GLN GLY GLY LYS ASP PHE SEQRES 3 A 112 ASN VAL PRO LEU SER ILE SER ARG LEU THR PRO GLY GLY SEQRES 4 A 112 LYS ALA ALA GLN ALA GLY VAL ALA VAL GLY ASP TRP VAL SEQRES 5 A 112 LEU SER ILE ASP GLY GLU ASN ALA GLY SER LEU THR HIS SEQRES 6 A 112 ILE GLU ALA GLN ASN LYS ILE ARG ALA CYS GLY GLU ARG SEQRES 7 A 112 LEU SER LEU GLY LEU SER ARG ALA GLY ALA SER ALA GLY SEQRES 8 A 112 ALA SER ALA GLY ALA SER ALA HIS GLY ASN PHE ALA PHE SEQRES 9 A 112 GLU GLY ILE GLY ASP GLU ASP LEU HELIX 1 AA1 LYS A 22 ASN A 25 5 4 HELIX 2 AA2 GLY A 37 GLY A 43 1 7 HELIX 3 AA3 THR A 62 ALA A 72 1 11 HELIX 4 AA4 GLY A 93 GLY A 98 1 6 SHEET 1 AA1 5 SER A 3 LEU A 8 0 SHEET 2 AA1 5 LEU A 77 SER A 82 -1 O LEU A 79 N VAL A 6 SHEET 3 AA1 5 TRP A 49 ILE A 53 -1 N LEU A 51 O GLY A 80 SHEET 4 AA1 5 VAL A 26 LEU A 33 -1 N LEU A 28 O VAL A 50 SHEET 5 AA1 5 PHE A 16 GLY A 21 -1 N GLY A 21 O VAL A 26 SHEET 1 AA2 4 SER A 3 LEU A 8 0 SHEET 2 AA2 4 LEU A 77 SER A 82 -1 O LEU A 79 N VAL A 6 SHEET 3 AA2 4 TRP A 49 ILE A 53 -1 N LEU A 51 O GLY A 80 SHEET 4 AA2 4 GLU A 56 ASN A 57 -1 O GLU A 56 N ILE A 53 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1