HEADER PROTEIN BINDING 27-JUL-21 7RMA TITLE STRUCTURE OF THE FOURTH UIM (UBIQUITIN INTERACTING MOTIF) OF ANKRD13D TITLE 2 IN COMPLEX WITH A HIGH AFFINITY UBV (UBIQUITIN VARIANT) COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN VARIANT; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 13D; COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UBB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PHH239; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS UBIQUITIN-INTERACTING MOTIF, UIM, UBIQUITIN VARIANT, PROTEIN KEYWDS 2 ENGINEERING, PROTEIN RECOGNITION, STRAND-EXCHANGE DIMER, PROTEIN KEYWDS 3 BINDING EXPDTA X-RAY DIFFRACTION AUTHOR A.U.SINGER,N.MANCZYK,G.VEGGIANI,F.SICHERI,S.S.SIDHU REVDAT 2 18-OCT-23 7RMA 1 REMARK REVDAT 1 11-MAY-22 7RMA 0 JRNL AUTH G.VEGGIANI,B.P.YATES,G.D.MARTYN,N.MANCZYK,A.U.SINGER, JRNL AUTH 2 I.KURINOV,F.SICHERI,S.S.SIDHU JRNL TITL PANEL OF ENGINEERED UBIQUITIN VARIANTS TARGETING THE FAMILY JRNL TITL 2 OF HUMAN UBIQUITIN INTERACTING MOTIFS. JRNL REF ACS CHEM.BIOL. V. 17 941 2022 JRNL REFN ESSN 1554-8937 JRNL PMID 35385646 JRNL DOI 10.1021/ACSCHEMBIO.2C00089 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.36 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 6482 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 648 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.3600 - 3.4200 1.00 1255 139 0.1780 0.2326 REMARK 3 2 3.4200 - 2.7100 0.99 1169 130 0.2191 0.2139 REMARK 3 3 2.7100 - 2.3700 1.00 1150 129 0.2425 0.2664 REMARK 3 4 2.3700 - 2.1500 0.99 1132 125 0.2492 0.3428 REMARK 3 5 2.1500 - 2.0000 0.99 1128 125 0.2731 0.2927 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.222 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.048 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.92 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 780 REMARK 3 ANGLE : 0.726 1058 REMARK 3 CHIRALITY : 0.052 122 REMARK 3 PLANARITY : 0.006 139 REMARK 3 DIHEDRAL : 19.327 483 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.5782 4.6428 22.3467 REMARK 3 T TENSOR REMARK 3 T11: 0.5337 T22: 0.3933 REMARK 3 T33: 0.2634 T12: -0.0510 REMARK 3 T13: -0.0439 T23: 0.0790 REMARK 3 L TENSOR REMARK 3 L11: 2.1440 L22: 4.1960 REMARK 3 L33: 3.3484 L12: 2.3463 REMARK 3 L13: -2.1472 L23: -3.7622 REMARK 3 S TENSOR REMARK 3 S11: 0.2072 S12: 0.6976 S13: 0.4830 REMARK 3 S21: 0.0846 S22: -0.0219 S23: 0.4645 REMARK 3 S31: -0.6301 S32: 0.3316 S33: -0.2406 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 10 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.2623 -12.9171 19.8927 REMARK 3 T TENSOR REMARK 3 T11: 0.3267 T22: 1.1002 REMARK 3 T33: 0.4149 T12: 0.0113 REMARK 3 T13: 0.0846 T23: -0.0920 REMARK 3 L TENSOR REMARK 3 L11: 2.2756 L22: 2.1475 REMARK 3 L33: 1.0779 L12: 0.0085 REMARK 3 L13: -1.1898 L23: -0.9917 REMARK 3 S TENSOR REMARK 3 S11: -0.1123 S12: 0.0189 S13: -0.4305 REMARK 3 S21: 0.0283 S22: -0.3136 S23: 0.4273 REMARK 3 S31: -0.5974 S32: -1.4702 S33: 0.0175 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 23 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.8115 -5.0844 18.5687 REMARK 3 T TENSOR REMARK 3 T11: 0.4568 T22: 1.0693 REMARK 3 T33: 0.3399 T12: 0.3443 REMARK 3 T13: 0.1190 T23: -0.1398 REMARK 3 L TENSOR REMARK 3 L11: 5.2635 L22: 6.1465 REMARK 3 L33: 6.1184 L12: 1.7483 REMARK 3 L13: -2.5600 L23: 3.2217 REMARK 3 S TENSOR REMARK 3 S11: -0.5521 S12: -0.2297 S13: 0.5361 REMARK 3 S21: 0.8232 S22: -0.2732 S23: 0.8891 REMARK 3 S31: -0.2125 S32: 0.2420 S33: 0.0785 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 35 THROUGH 67 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.5192 -11.2509 10.9442 REMARK 3 T TENSOR REMARK 3 T11: 0.3170 T22: 0.5139 REMARK 3 T33: 0.2416 T12: -0.0397 REMARK 3 T13: 0.0281 T23: -0.0864 REMARK 3 L TENSOR REMARK 3 L11: 4.7371 L22: 7.0271 REMARK 3 L33: 9.0474 L12: 0.6958 REMARK 3 L13: 0.9731 L23: 3.8216 REMARK 3 S TENSOR REMARK 3 S11: -0.1488 S12: -0.1148 S13: -0.0115 REMARK 3 S21: -0.6024 S22: -0.3005 S23: 0.4502 REMARK 3 S31: -0.0548 S32: -1.2520 S33: 0.3708 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 68 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.1454 -3.9672 13.7521 REMARK 3 T TENSOR REMARK 3 T11: 0.3866 T22: 0.2541 REMARK 3 T33: 0.2358 T12: 0.0431 REMARK 3 T13: -0.0475 T23: -0.0656 REMARK 3 L TENSOR REMARK 3 L11: 6.1830 L22: 2.4478 REMARK 3 L33: 6.8401 L12: 2.5273 REMARK 3 L13: 0.8288 L23: -2.1431 REMARK 3 S TENSOR REMARK 3 S11: 0.0640 S12: -0.2714 S13: 0.4846 REMARK 3 S21: -0.0361 S22: -0.8288 S23: 0.0929 REMARK 3 S31: -0.9007 S32: 0.0109 S33: 0.4765 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 4 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.9601 -12.2444 10.1208 REMARK 3 T TENSOR REMARK 3 T11: 0.3430 T22: 0.2507 REMARK 3 T33: 0.2408 T12: -0.0330 REMARK 3 T13: 0.1184 T23: -0.0279 REMARK 3 L TENSOR REMARK 3 L11: 4.9288 L22: 3.9424 REMARK 3 L33: 9.6540 L12: 1.2829 REMARK 3 L13: 5.0018 L23: 5.3796 REMARK 3 S TENSOR REMARK 3 S11: -0.0017 S12: -0.1625 S13: -0.0226 REMARK 3 S21: 0.5683 S22: 0.0746 S23: -0.0383 REMARK 3 S31: 0.1865 S32: -0.0338 S33: -0.0595 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7RMA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1000258512. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97920 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6724 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 32.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.51100 REMARK 200 R SYM FOR SHELL (I) : 0.59500 REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: UBV FROM PDB 6CRN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 31.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M LI2SO4, 0.1M SODIUM ACETATE PH REMARK 280 4.5 AND 50% PEG 400. CRYSTALS WERE CRYOPROTECTED IN THIS BUFFER REMARK 280 PLUS 20% ETHYLENE GLYCOL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.19500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 22.88500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 22.88500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 21.09750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 22.88500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 22.88500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 63.29250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 22.88500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 22.88500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 21.09750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 22.88500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 22.88500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 63.29250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 42.19500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -79.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 42.19500 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 104 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -5 REMARK 465 ALA A -4 REMARK 465 ALA A -3 REMARK 465 GLN A -2 REMARK 465 PRO A -1 REMARK 465 SER A 75 REMARK 465 LEU A 76 REMARK 465 ARG A 77 REMARK 465 ALA A 78 REMARK 465 GLY A 79 REMARK 465 ALA A 80 REMARK 465 ALA A 81 REMARK 465 ALA A 82 REMARK 465 ARG C 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 10 CG SD CE REMARK 470 ARG A 54 NH1 NH2 REMARK 470 ARG A 74 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 5 CG CD OE1 NE2 REMARK 470 GLU C 7 CG CD OE1 OE2 REMARK 470 GLU C 9 CD OE1 OE2 REMARK 470 ARG C 13 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 10 74.95 -152.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6NJG RELATED DB: PDB REMARK 900 UBV.V27.1 IN COMPLEX WITH UIM FROM VPS27 DBREF 7RMA A 1 79 UNP P0CG47 UBB_HUMAN 1 79 DBREF 7RMA C 3 22 UNP Q6ZTN6 AN13D_HUMAN 499 518 SEQADV 7RMA GLY A -5 UNP P0CG47 EXPRESSION TAG SEQADV 7RMA ALA A -4 UNP P0CG47 EXPRESSION TAG SEQADV 7RMA ALA A -3 UNP P0CG47 EXPRESSION TAG SEQADV 7RMA GLN A -2 UNP P0CG47 EXPRESSION TAG SEQADV 7RMA PRO A -1 UNP P0CG47 EXPRESSION TAG SEQADV 7RMA ALA A 0 UNP P0CG47 EXPRESSION TAG SEQADV 7RMA ARG A 6 UNP P0CG47 LYS 6 VARIANT SEQADV 7RMA HIS A 8 UNP P0CG47 LEU 8 VARIANT SEQADV 7RMA ALA A 9 UNP P0CG47 THR 9 VARIANT SEQADV 7RMA MET A 10 UNP P0CG47 GLY 10 VARIANT SEQADV 7RMA ARG A 11 UNP P0CG47 LYS 11 VARIANT SEQADV 7RMA ASP A 13 UNP P0CG47 ILE 13 VARIANT SEQADV 7RMA VAL A 14 UNP P0CG47 THR 14 VARIANT SEQADV 7RMA ARG A 62 UNP P0CG47 GLN 62 VARIANT SEQADV 7RMA GLN A 63 UNP P0CG47 LYS 63 VARIANT SEQADV 7RMA ILE A 66 UNP P0CG47 THR 66 VARIANT SEQADV 7RMA LEU A 70 UNP P0CG47 VAL 70 VARIANT SEQADV 7RMA TRP A 72 UNP P0CG47 ARG 72 VARIANT SEQADV 7RMA PRO A 73 UNP P0CG47 LEU 73 VARIANT SEQADV 7RMA SER A 75 UNP P0CG47 GLY 75 VARIANT SEQADV 7RMA LEU A 76 UNP P0CG47 GLY 76 VARIANT SEQADV 7RMA ARG A 77 UNP P0CG47 MET 77 VARIANT SEQADV 7RMA ALA A 78 UNP P0CG47 GLN 78 VARIANT SEQADV 7RMA GLY A 79 UNP P0CG47 ILE 79 VARIANT SEQADV 7RMA ALA A 80 UNP P0CG47 CLONING ARTIFACT SEQADV 7RMA ALA A 81 UNP P0CG47 CLONING ARTIFACT SEQADV 7RMA ALA A 82 UNP P0CG47 CLONING ARTIFACT SEQRES 1 A 88 GLY ALA ALA GLN PRO ALA MET GLN ILE PHE VAL ARG THR SEQRES 2 A 88 HIS ALA MET ARG THR ASP VAL LEU GLU VAL GLU PRO SER SEQRES 3 A 88 ASP THR ILE GLU ASN VAL LYS ALA LYS ILE GLN ASP LYS SEQRES 4 A 88 GLU GLY ILE PRO PRO ASP GLN GLN ARG LEU ILE PHE ALA SEQRES 5 A 88 GLY LYS GLN LEU GLU ASP GLY ARG THR LEU SER ASP TYR SEQRES 6 A 88 ASN ILE ARG GLN GLU SER ILE LEU HIS LEU LEU LEU TRP SEQRES 7 A 88 PRO ARG SER LEU ARG ALA GLY ALA ALA ALA SEQRES 1 C 20 ARG GLY GLN GLN GLU GLU GLU ASP LEU GLN ARG ILE LEU SEQRES 2 C 20 GLN LEU SER LEU THR GLU HIS HET SO4 C 101 5 HET NA C 102 1 HETNAM SO4 SULFATE ION HETNAM NA SODIUM ION FORMUL 3 SO4 O4 S 2- FORMUL 4 NA NA 1+ FORMUL 5 HOH *17(H2 O) HELIX 1 AA1 THR A 22 GLY A 35 1 14 HELIX 2 AA2 PRO A 37 ASP A 39 5 3 HELIX 3 AA3 LEU A 56 ASN A 60 5 5 HELIX 4 AA4 GLN C 5 LEU C 19 1 15 SHEET 1 AA1 3 LYS A 48 GLN A 49 0 SHEET 2 AA1 3 GLN A 41 PHE A 45 -1 N PHE A 45 O LYS A 48 SHEET 3 AA1 3 HIS A 68 LEU A 71 -1 O HIS A 68 N ILE A 44 CRYST1 45.770 45.770 84.390 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021848 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021848 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011850 0.00000