HEADER VIRAL PROTEIN 27-JUL-21 7RMJ TITLE DISULFIDE STABILIZED HIV-1 CA HEXAMER IN COMPLEX WITH CAPSID INHIBITOR TITLE 2 (S)-N-(1-(3-(4-CHLORO-3-(METHYLSULFONAMIDO)-1-(2,2,2-TRIFLUOROETHYL)- TITLE 3 1H-INDAZOL-7-YL)-6-(3-METHYL-3-(METHYLSULFONYL)BUT-1-YN-1-YL)PYRIDIN- TITLE 4 2-YL)-2-(3,5-DIFLUOROPHENYL)ETHYL)-2-(3-(TRIFLUOROMETHYL)-4,5,6,7- TITLE 5 TETRAHYDRO-1H-INDAZOL-1-YL)ACETAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN P24; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 GENE: GAG; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS INHIBITOR, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.M.BESTER,M.KVARATSKHELIA REVDAT 5 18-OCT-23 7RMJ 1 REMARK REVDAT 4 09-NOV-22 7RMJ 1 JRNL REVDAT 3 19-OCT-22 7RMJ 1 JRNL REVDAT 2 10-AUG-22 7RMJ 1 REMARK REVDAT 1 03-AUG-22 7RMJ 0 JRNL AUTH S.M.BESTER,D.ADU-AMPRATWUM,A.S.ANNAMALAI,G.WEI,L.BRIGANTI, JRNL AUTH 2 B.C.MURPHY,R.HANEY,J.R.FUCHS,M.KVARATSKHELIA JRNL TITL STRUCTURAL AND MECHANISTIC BASES OF VIRAL RESISTANCE TO JRNL TITL 2 HIV-1 CAPSID INHIBITOR LENACAPAVIR. JRNL REF MBIO V. 13 80422 2022 JRNL REFN ESSN 2150-7511 JRNL PMID 36190128 JRNL DOI 10.1128/MBIO.01804-22 REMARK 2 REMARK 2 RESOLUTION. 2.27 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.27 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 39059 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.840 REMARK 3 FREE R VALUE TEST SET COUNT : 1892 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.2900 - 5.4700 1.00 2757 142 0.2168 0.1976 REMARK 3 2 5.4700 - 4.3400 1.00 2695 140 0.1785 0.2018 REMARK 3 3 4.3400 - 3.8000 1.00 2690 119 0.1707 0.2144 REMARK 3 4 3.8000 - 3.4500 1.00 2685 123 0.1852 0.2331 REMARK 3 5 3.4500 - 3.2000 1.00 2637 149 0.2144 0.2489 REMARK 3 6 3.2000 - 3.0100 1.00 2673 125 0.2295 0.2681 REMARK 3 7 3.0100 - 2.8600 1.00 2639 129 0.2287 0.3124 REMARK 3 8 2.8600 - 2.7400 1.00 2633 159 0.2418 0.2882 REMARK 3 9 2.7400 - 2.6300 1.00 2683 102 0.2451 0.2869 REMARK 3 10 2.6300 - 2.5400 1.00 2640 135 0.2505 0.2704 REMARK 3 11 2.5400 - 2.4600 1.00 2611 154 0.2440 0.2822 REMARK 3 12 2.4600 - 2.3900 1.00 2647 142 0.2529 0.2916 REMARK 3 13 2.3900 - 2.3300 0.99 2618 134 0.2594 0.2813 REMARK 3 14 2.3300 - 2.2700 0.96 2559 139 0.2795 0.3255 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.272 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.122 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.56 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 5599 REMARK 3 ANGLE : 0.637 7702 REMARK 3 CHIRALITY : 0.041 805 REMARK 3 PLANARITY : 0.005 957 REMARK 3 DIHEDRAL : 14.761 2051 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 1:144 ) REMARK 3 ORIGIN FOR THE GROUP (A): 96.741 -65.229 -6.132 REMARK 3 T TENSOR REMARK 3 T11: 0.2118 T22: 0.1739 REMARK 3 T33: 0.1962 T12: -0.0113 REMARK 3 T13: -0.0201 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 2.2566 L22: 2.0751 REMARK 3 L33: 2.0903 L12: -0.5807 REMARK 3 L13: 0.0244 L23: -0.5230 REMARK 3 S TENSOR REMARK 3 S11: -0.0079 S12: 0.1687 S13: 0.0581 REMARK 3 S21: -0.2491 S22: -0.0935 S23: 0.0188 REMARK 3 S31: 0.1587 S32: 0.1188 S33: 0.0758 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 145:174 ) REMARK 3 ORIGIN FOR THE GROUP (A): 78.970 -80.108 18.431 REMARK 3 T TENSOR REMARK 3 T11: 0.3256 T22: 0.2635 REMARK 3 T33: 0.2403 T12: 0.0293 REMARK 3 T13: 0.0158 T23: 0.0221 REMARK 3 L TENSOR REMARK 3 L11: 2.5415 L22: 2.1719 REMARK 3 L33: 3.0425 L12: 1.1898 REMARK 3 L13: -0.3343 L23: -0.8351 REMARK 3 S TENSOR REMARK 3 S11: 0.0170 S12: -0.3716 S13: -0.0748 REMARK 3 S21: 0.4071 S22: -0.2502 S23: -0.3126 REMARK 3 S31: -0.2445 S32: 0.3019 S33: 0.1273 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 175:219 ) REMARK 3 ORIGIN FOR THE GROUP (A): 78.142 -83.496 11.365 REMARK 3 T TENSOR REMARK 3 T11: 0.4295 T22: 0.2680 REMARK 3 T33: 0.2984 T12: -0.0126 REMARK 3 T13: 0.0615 T23: -0.0284 REMARK 3 L TENSOR REMARK 3 L11: 2.0246 L22: 1.7875 REMARK 3 L33: 1.3406 L12: -0.1215 REMARK 3 L13: 1.2075 L23: -0.3119 REMARK 3 S TENSOR REMARK 3 S11: -0.0128 S12: 0.1431 S13: -0.3629 REMARK 3 S21: -0.0467 S22: 0.1310 S23: 0.0766 REMARK 3 S31: 0.3468 S32: -0.0119 S33: -0.0379 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN B AND RESID 1:160 ) REMARK 3 ORIGIN FOR THE GROUP (A): 64.716 -25.535 -3.404 REMARK 3 T TENSOR REMARK 3 T11: 0.2626 T22: 0.2454 REMARK 3 T33: 0.2444 T12: 0.0149 REMARK 3 T13: 0.0320 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 1.6344 L22: 0.8696 REMARK 3 L33: 1.7498 L12: 0.0658 REMARK 3 L13: 0.8535 L23: 0.2604 REMARK 3 S TENSOR REMARK 3 S11: -0.0640 S12: 0.0557 S13: -0.0547 REMARK 3 S21: -0.1761 S22: -0.0453 S23: 0.0261 REMARK 3 S31: -0.1433 S32: -0.0103 S33: 0.0937 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN B AND RESID 161:220 ) REMARK 3 ORIGIN FOR THE GROUP (A): 87.490 -7.447 15.145 REMARK 3 T TENSOR REMARK 3 T11: 0.3971 T22: 0.2707 REMARK 3 T33: 0.2485 T12: 0.0091 REMARK 3 T13: -0.0497 T23: -0.0213 REMARK 3 L TENSOR REMARK 3 L11: 2.5610 L22: 3.3720 REMARK 3 L33: 2.6240 L12: 1.1928 REMARK 3 L13: -0.9659 L23: 0.8636 REMARK 3 S TENSOR REMARK 3 S11: -0.1642 S12: -0.1675 S13: 0.2898 REMARK 3 S21: -0.1106 S22: 0.1793 S23: 0.0450 REMARK 3 S31: -0.6296 S32: 0.0935 S33: -0.0062 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN C AND RESID 1:144 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.577 -16.260 33.380 REMARK 3 T TENSOR REMARK 3 T11: 0.1450 T22: 0.1802 REMARK 3 T33: 0.1931 T12: 0.0020 REMARK 3 T13: -0.0062 T23: -0.0423 REMARK 3 L TENSOR REMARK 3 L11: 1.4978 L22: 1.5812 REMARK 3 L33: 2.2401 L12: -0.2013 REMARK 3 L13: -0.2206 L23: -0.3942 REMARK 3 S TENSOR REMARK 3 S11: -0.0344 S12: -0.1743 S13: 0.0087 REMARK 3 S21: 0.0598 S22: -0.0185 S23: 0.0396 REMARK 3 S31: 0.0099 S32: 0.1775 S33: 0.0587 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN C AND RESID 145:220 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.107 5.881 11.363 REMARK 3 T TENSOR REMARK 3 T11: 0.2126 T22: 0.2202 REMARK 3 T33: 0.2347 T12: 0.0098 REMARK 3 T13: 0.0360 T23: -0.0128 REMARK 3 L TENSOR REMARK 3 L11: 3.0810 L22: 2.8314 REMARK 3 L33: 3.0814 L12: 2.2421 REMARK 3 L13: -0.3237 L23: 0.9379 REMARK 3 S TENSOR REMARK 3 S11: -0.1894 S12: 0.1408 S13: -0.3036 REMARK 3 S21: -0.1233 S22: 0.2624 S23: -0.3445 REMARK 3 S31: 0.2361 S32: 0.2585 S33: -0.0256 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 1 through 5 or REMARK 3 resid 8 or (resid 9 and (name N or name REMARK 3 CA or name C or name O or name CB )) or REMARK 3 resid 10 through 99 or resid 101 through REMARK 3 111 or resid 113 through 131 or resid 133 REMARK 3 through 142 or resid 144 through 174 or REMARK 3 resid 176 or (resid 179 and (name N or REMARK 3 name CA or name C or name O or name CB )) REMARK 3 or resid 181 or (resid 182 and (name N or REMARK 3 name CA or name C or name O or name CB )) REMARK 3 or resid 183 through 186 or (resid 187 REMARK 3 and (name N or name CA or name C or name REMARK 3 O or name CB )) or resid 189 through 191 REMARK 3 or resid 193 through 202 or resid 204 REMARK 3 through 211 or resid 213 through 219)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 1 through 5 or REMARK 3 resid 8 or (resid 9 and (name N or name REMARK 3 CA or name C or name O or name CB )) or REMARK 3 resid 10 through 17 or (resid 18 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or resid 19 through 99 or REMARK 3 resid 101 through 111 or resid 113 REMARK 3 through 131 or resid 133 through 142 or REMARK 3 resid 144 through 174 or resid 176 REMARK 3 through 179 or resid 181 through 187 or REMARK 3 resid 189 through 191 or resid 193 REMARK 3 through 202 or resid 204 through 211 or REMARK 3 resid 213 through 219)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "C" and (resid 1 through 5 or REMARK 3 resid 8 through 99 or resid 101 through REMARK 3 111 or resid 113 through 131 or resid 133 REMARK 3 through 142 or resid 144 through 174 or REMARK 3 resid 176 or (resid 179 and (name N or REMARK 3 name CA or name C or name O or name CB )) REMARK 3 or resid 181 through 186 or (resid 187 REMARK 3 and (name N or name CA or name C or name REMARK 3 O or name CB )) or resid 189 through 191 REMARK 3 or resid 193 through 202 or resid 204 REMARK 3 through 211 or resid 213 through 219)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7RMJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1000258563. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00003 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : RDI CMOS_8M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39080 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.270 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 10.10 REMARK 200 R MERGE (I) : 0.20000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.27 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.77700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6VKV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.125M NAI, 4.5% PEG 3350, 6% REMARK 280 GLYCEROL, 0.1M SODIUM CACODYLATE PH 6.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 6 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z REMARK 290 6555 X-Y,X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 80.01150 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -138.58398 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 160.02300 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 5 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 220 REMARK 465 VAL A 221 REMARK 465 GLY A 222 REMARK 465 GLY A 223 REMARK 465 PRO A 224 REMARK 465 GLY A 225 REMARK 465 HIS A 226 REMARK 465 LYS A 227 REMARK 465 ALA A 228 REMARK 465 ARG A 229 REMARK 465 VAL A 230 REMARK 465 LEU A 231 REMARK 465 ALA B 177 REMARK 465 SER B 178 REMARK 465 VAL B 221 REMARK 465 GLY B 222 REMARK 465 GLY B 223 REMARK 465 PRO B 224 REMARK 465 GLY B 225 REMARK 465 HIS B 226 REMARK 465 LYS B 227 REMARK 465 ALA B 228 REMARK 465 ARG B 229 REMARK 465 VAL B 230 REMARK 465 LEU B 231 REMARK 465 VAL C 221 REMARK 465 GLY C 222 REMARK 465 GLY C 223 REMARK 465 PRO C 224 REMARK 465 GLY C 225 REMARK 465 HIS C 226 REMARK 465 LYS C 227 REMARK 465 ALA C 228 REMARK 465 ARG C 229 REMARK 465 VAL C 230 REMARK 465 LEU C 231 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 18 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 7 CG CD OE1 NE2 REMARK 470 GLN B 179 CG CD OE1 NE2 REMARK 470 GLU B 180 CG CD OE1 OE2 REMARK 470 LYS B 182 CG CD CE NZ REMARK 470 GLU B 187 CG CD OE1 OE2 REMARK 470 GLN C 9 CG CD OE1 NE2 REMARK 470 ARG C 18 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 180 CG CD OE1 OE2 REMARK 470 LYS C 182 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 5 -151.04 -82.97 REMARK 500 ALA A 31 -117.28 51.49 REMARK 500 LEU A 189 -34.25 -132.21 REMARK 500 ALA B 31 -116.42 51.23 REMARK 500 GLU B 187 -20.83 74.58 REMARK 500 THR B 188 -41.66 -130.01 REMARK 500 LEU C 6 33.95 -80.68 REMARK 500 GLN C 7 -24.08 -140.77 REMARK 500 ALA C 31 -116.58 51.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7RAO RELATED DB: PDB REMARK 900 RELATED ID: 7RAR RELATED DB: PDB REMARK 900 RELATED ID: 7RHN RELATED DB: PDB REMARK 900 RELATED ID: 7RHM RELATED DB: PDB REMARK 900 RELATED ID: 7RJ2 RELATED DB: PDB REMARK 900 RELATED ID: 7RJ4 RELATED DB: PDB DBREF 7RMJ A 1 231 UNP B6DRA0 B6DRA0_9HIV1 133 363 DBREF 7RMJ B 1 231 UNP B6DRA0 B6DRA0_9HIV1 133 363 DBREF 7RMJ C 1 231 UNP B6DRA0 B6DRA0_9HIV1 133 363 SEQADV 7RMJ CYS A 14 UNP B6DRA0 ALA 146 ENGINEERED MUTATION SEQADV 7RMJ CYS A 45 UNP B6DRA0 GLU 177 ENGINEERED MUTATION SEQADV 7RMJ ALA A 184 UNP B6DRA0 TRP 316 ENGINEERED MUTATION SEQADV 7RMJ ALA A 185 UNP B6DRA0 MET 317 ENGINEERED MUTATION SEQADV 7RMJ CYS B 14 UNP B6DRA0 ALA 146 ENGINEERED MUTATION SEQADV 7RMJ CYS B 45 UNP B6DRA0 GLU 177 ENGINEERED MUTATION SEQADV 7RMJ ALA B 184 UNP B6DRA0 TRP 316 ENGINEERED MUTATION SEQADV 7RMJ ALA B 185 UNP B6DRA0 MET 317 ENGINEERED MUTATION SEQADV 7RMJ CYS C 14 UNP B6DRA0 ALA 146 ENGINEERED MUTATION SEQADV 7RMJ CYS C 45 UNP B6DRA0 GLU 177 ENGINEERED MUTATION SEQADV 7RMJ ALA C 184 UNP B6DRA0 TRP 316 ENGINEERED MUTATION SEQADV 7RMJ ALA C 185 UNP B6DRA0 MET 317 ENGINEERED MUTATION SEQRES 1 A 231 PRO ILE VAL GLN ASN LEU GLN GLY GLN MET VAL HIS GLN SEQRES 2 A 231 CYS ILE SER PRO ARG THR LEU ASN ALA TRP VAL LYS VAL SEQRES 3 A 231 VAL GLU GLU LYS ALA PHE SER PRO GLU VAL ILE PRO MET SEQRES 4 A 231 PHE SER ALA LEU SER CYS GLY ALA THR PRO GLN ASP LEU SEQRES 5 A 231 ASN THR MET LEU ASN THR VAL GLY GLY HIS GLN ALA ALA SEQRES 6 A 231 MET GLN MET LEU LYS GLU THR ILE ASN GLU GLU ALA ALA SEQRES 7 A 231 GLU TRP ASP ARG LEU HIS PRO VAL HIS ALA GLY PRO ILE SEQRES 8 A 231 ALA PRO GLY GLN MET ARG GLU PRO ARG GLY SER ASP ILE SEQRES 9 A 231 ALA GLY THR THR SER THR LEU GLN GLU GLN ILE GLY TRP SEQRES 10 A 231 MET THR HIS ASN PRO PRO ILE PRO VAL GLY GLU ILE TYR SEQRES 11 A 231 LYS ARG TRP ILE ILE LEU GLY LEU ASN LYS ILE VAL ARG SEQRES 12 A 231 MET TYR SER PRO THR SER ILE LEU ASP ILE ARG GLN GLY SEQRES 13 A 231 PRO LYS GLU PRO PHE ARG ASP TYR VAL ASP ARG PHE TYR SEQRES 14 A 231 LYS THR LEU ARG ALA GLU GLN ALA SER GLN GLU VAL LYS SEQRES 15 A 231 ASN ALA ALA THR GLU THR LEU LEU VAL GLN ASN ALA ASN SEQRES 16 A 231 PRO ASP CYS LYS THR ILE LEU LYS ALA LEU GLY PRO GLY SEQRES 17 A 231 ALA THR LEU GLU GLU MET MET THR ALA CYS GLN GLY VAL SEQRES 18 A 231 GLY GLY PRO GLY HIS LYS ALA ARG VAL LEU SEQRES 1 B 231 PRO ILE VAL GLN ASN LEU GLN GLY GLN MET VAL HIS GLN SEQRES 2 B 231 CYS ILE SER PRO ARG THR LEU ASN ALA TRP VAL LYS VAL SEQRES 3 B 231 VAL GLU GLU LYS ALA PHE SER PRO GLU VAL ILE PRO MET SEQRES 4 B 231 PHE SER ALA LEU SER CYS GLY ALA THR PRO GLN ASP LEU SEQRES 5 B 231 ASN THR MET LEU ASN THR VAL GLY GLY HIS GLN ALA ALA SEQRES 6 B 231 MET GLN MET LEU LYS GLU THR ILE ASN GLU GLU ALA ALA SEQRES 7 B 231 GLU TRP ASP ARG LEU HIS PRO VAL HIS ALA GLY PRO ILE SEQRES 8 B 231 ALA PRO GLY GLN MET ARG GLU PRO ARG GLY SER ASP ILE SEQRES 9 B 231 ALA GLY THR THR SER THR LEU GLN GLU GLN ILE GLY TRP SEQRES 10 B 231 MET THR HIS ASN PRO PRO ILE PRO VAL GLY GLU ILE TYR SEQRES 11 B 231 LYS ARG TRP ILE ILE LEU GLY LEU ASN LYS ILE VAL ARG SEQRES 12 B 231 MET TYR SER PRO THR SER ILE LEU ASP ILE ARG GLN GLY SEQRES 13 B 231 PRO LYS GLU PRO PHE ARG ASP TYR VAL ASP ARG PHE TYR SEQRES 14 B 231 LYS THR LEU ARG ALA GLU GLN ALA SER GLN GLU VAL LYS SEQRES 15 B 231 ASN ALA ALA THR GLU THR LEU LEU VAL GLN ASN ALA ASN SEQRES 16 B 231 PRO ASP CYS LYS THR ILE LEU LYS ALA LEU GLY PRO GLY SEQRES 17 B 231 ALA THR LEU GLU GLU MET MET THR ALA CYS GLN GLY VAL SEQRES 18 B 231 GLY GLY PRO GLY HIS LYS ALA ARG VAL LEU SEQRES 1 C 231 PRO ILE VAL GLN ASN LEU GLN GLY GLN MET VAL HIS GLN SEQRES 2 C 231 CYS ILE SER PRO ARG THR LEU ASN ALA TRP VAL LYS VAL SEQRES 3 C 231 VAL GLU GLU LYS ALA PHE SER PRO GLU VAL ILE PRO MET SEQRES 4 C 231 PHE SER ALA LEU SER CYS GLY ALA THR PRO GLN ASP LEU SEQRES 5 C 231 ASN THR MET LEU ASN THR VAL GLY GLY HIS GLN ALA ALA SEQRES 6 C 231 MET GLN MET LEU LYS GLU THR ILE ASN GLU GLU ALA ALA SEQRES 7 C 231 GLU TRP ASP ARG LEU HIS PRO VAL HIS ALA GLY PRO ILE SEQRES 8 C 231 ALA PRO GLY GLN MET ARG GLU PRO ARG GLY SER ASP ILE SEQRES 9 C 231 ALA GLY THR THR SER THR LEU GLN GLU GLN ILE GLY TRP SEQRES 10 C 231 MET THR HIS ASN PRO PRO ILE PRO VAL GLY GLU ILE TYR SEQRES 11 C 231 LYS ARG TRP ILE ILE LEU GLY LEU ASN LYS ILE VAL ARG SEQRES 12 C 231 MET TYR SER PRO THR SER ILE LEU ASP ILE ARG GLN GLY SEQRES 13 C 231 PRO LYS GLU PRO PHE ARG ASP TYR VAL ASP ARG PHE TYR SEQRES 14 C 231 LYS THR LEU ARG ALA GLU GLN ALA SER GLN GLU VAL LYS SEQRES 15 C 231 ASN ALA ALA THR GLU THR LEU LEU VAL GLN ASN ALA ASN SEQRES 16 C 231 PRO ASP CYS LYS THR ILE LEU LYS ALA LEU GLY PRO GLY SEQRES 17 C 231 ALA THR LEU GLU GLU MET MET THR ALA CYS GLN GLY VAL SEQRES 18 C 231 GLY GLY PRO GLY HIS LYS ALA ARG VAL LEU HET 61F A 301 124 HET IOD A 302 1 HET CL A 303 1 HET CL A 304 1 HET CL A 305 1 HET CL A 306 1 HET CL A 307 1 HET 61F B 301 124 HET IOD B 302 1 HET IOD B 303 1 HET CL B 304 1 HET CL B 305 1 HET CL B 306 1 HET CL B 307 1 HET CL B 308 1 HET 61F C 301 124 HET IOD C 302 1 HET IOD C 303 1 HET CL C 304 1 HET CL C 305 1 HET CL C 306 1 HET CL C 307 1 HET CL C 308 1 HET CL C 309 1 HET CL C 310 1 HETNAM 61F N-[(1S)-1-(3-{4-CHLORO-3-[(METHANESULFONYL)AMINO]-1-(2, HETNAM 2 61F 2,2-TRIFLUOROETHYL)-1H-INDAZOL-7-YL}-6-[3- HETNAM 3 61F (METHANESULFONYL)-3-METHYLBUT-1-YN-1-YL]PYRIDIN-2-YL)- HETNAM 4 61F 2-(3,5-DIFLUOROPHENYL)ETHYL]-2-[3-(TRIFLUOROMETHYL)-4, HETNAM 5 61F 5,6,7-TETRAHYDRO-1H-INDAZOL-1-YL]ACETAMIDE HETNAM IOD IODIDE ION HETNAM CL CHLORIDE ION FORMUL 4 61F 3(C39 H36 CL F8 N7 O5 S2) FORMUL 5 IOD 5(I 1-) FORMUL 6 CL 17(CL 1-) FORMUL 29 HOH *220(H2 O) HELIX 1 AA1 SER A 16 ALA A 31 1 16 HELIX 2 AA2 GLU A 35 SER A 44 1 10 HELIX 3 AA3 THR A 48 THR A 58 1 11 HELIX 4 AA4 HIS A 62 HIS A 84 1 23 HELIX 5 AA5 ARG A 100 ALA A 105 1 6 HELIX 6 AA6 THR A 110 THR A 119 1 10 HELIX 7 AA7 PRO A 125 TYR A 145 1 21 HELIX 8 AA8 SER A 149 ILE A 153 5 5 HELIX 9 AA9 PRO A 160 GLU A 175 1 16 HELIX 10 AB1 SER A 178 LEU A 190 1 13 HELIX 11 AB2 ASN A 195 GLY A 206 1 12 HELIX 12 AB3 THR A 210 CYS A 218 1 9 HELIX 13 AB4 SER B 16 ALA B 31 1 16 HELIX 14 AB5 GLU B 35 SER B 44 1 10 HELIX 15 AB6 THR B 48 THR B 58 1 11 HELIX 16 AB7 HIS B 62 HIS B 84 1 23 HELIX 17 AB8 ARG B 100 ALA B 105 1 6 HELIX 18 AB9 THR B 110 THR B 119 1 10 HELIX 19 AC1 PRO B 125 TYR B 145 1 21 HELIX 20 AC2 SER B 149 ILE B 153 5 5 HELIX 21 AC3 PRO B 160 GLU B 175 1 16 HELIX 22 AC4 VAL B 181 THR B 186 1 6 HELIX 23 AC5 THR B 188 ASN B 193 1 6 HELIX 24 AC6 ASN B 195 GLY B 206 1 12 HELIX 25 AC7 THR B 210 CYS B 218 1 9 HELIX 26 AC8 SER C 16 ALA C 31 1 16 HELIX 27 AC9 GLU C 35 SER C 44 1 10 HELIX 28 AD1 THR C 48 THR C 58 1 11 HELIX 29 AD2 HIS C 62 HIS C 84 1 23 HELIX 30 AD3 ARG C 100 ALA C 105 1 6 HELIX 31 AD4 THR C 110 THR C 119 1 10 HELIX 32 AD5 PRO C 125 TYR C 145 1 21 HELIX 33 AD6 SER C 149 ILE C 153 5 5 HELIX 34 AD7 PRO C 160 GLU C 175 1 16 HELIX 35 AD8 SER C 178 LEU C 190 1 13 HELIX 36 AD9 ASN C 195 GLY C 206 1 12 HELIX 37 AE1 THR C 210 CYS C 218 1 9 SHEET 1 AA1 2 ILE A 2 GLN A 4 0 SHEET 2 AA1 2 MET A 10 HIS A 12 -1 O VAL A 11 N VAL A 3 SHEET 1 AA2 2 ILE B 2 GLN B 4 0 SHEET 2 AA2 2 MET B 10 HIS B 12 -1 O VAL B 11 N VAL B 3 SHEET 1 AA3 2 ILE C 2 GLN C 4 0 SHEET 2 AA3 2 MET C 10 HIS C 12 -1 O VAL C 11 N VAL C 3 SSBOND 1 CYS A 14 CYS B 45 1555 3655 2.04 SSBOND 2 CYS A 45 CYS B 14 1555 2545 2.04 SSBOND 3 CYS A 198 CYS A 218 1555 1555 2.03 SSBOND 4 CYS B 198 CYS B 218 1555 1555 2.04 SSBOND 5 CYS C 14 CYS C 45 1555 5555 2.04 SSBOND 6 CYS C 198 CYS C 218 1555 1555 2.03 CISPEP 1 ASN A 121 PRO A 122 0 -0.53 CISPEP 2 ASN B 121 PRO B 122 0 0.45 CISPEP 3 ASN C 121 PRO C 122 0 -0.46 CRYST1 160.023 160.023 57.598 90.00 90.00 120.00 P 6 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006249 0.003608 0.000000 0.00000 SCALE2 0.000000 0.007216 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017362 0.00000 MTRIX1 1 -0.999858 -0.013168 -0.010481 159.08351 1 MTRIX2 1 0.013228 -0.999897 -0.005590 -93.57682 1 MTRIX3 1 -0.010407 -0.005728 0.999929 0.53893 1 MTRIX1 2 0.028969 -0.999580 0.000279 -48.42713 1 MTRIX2 2 -0.999562 -0.028970 -0.005968 78.54622 1 MTRIX3 2 0.005974 -0.000106 -0.999982 26.78232 1