HEADER ANTIVIRAL PROTEIN, IMMUNE SYSTEM 29-JUL-21 7RNJ TITLE S2P6 FAB FRAGMENT BOUND TO THE SARS-COV/SARS-COV-2 SPIKE STEM HELIX TITLE 2 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MONOCLONAL ANTIBODY S2P6 FAB LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: MONOCLONAL ANTIBODY S2P6 FAB HEAVY CHAIN; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: SPIKE GLYCOPROTEIN STEM HELIX PEPTIDE; COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 14 2; SOURCE 15 ORGANISM_COMMON: 2019-NCOV, SARS-COV-2; SOURCE 16 ORGANISM_TAXID: 2697049 KEYWDS COVID-19, SARS-COV-2, NEUTRALIZING MONOCLONAL ANTIBODY, VIRAL KEYWDS 2 PROTEIN-IMMUNE SYSTEM COMPLEX, ANTIVIRAL PROTEIN, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR G.SNELL,N.CZUDNOCHOWSKI,T.I.CROLL,J.C.NIX,D.CORTI,E.CAMERONI,D.PINTO, AUTHOR 2 M.BELTRAMELLO,M.M.SAUER,D.VEESLER REVDAT 3 03-APR-24 7RNJ 1 REMARK REVDAT 2 22-SEP-21 7RNJ 1 JRNL REVDAT 1 11-AUG-21 7RNJ 0 JRNL AUTH D.PINTO,M.M.SAUER,N.CZUDNOCHOWSKI,J.S.LOW,M.A.TORTORICI, JRNL AUTH 2 M.P.HOUSLEY,J.NOACK,A.C.WALLS,J.E.BOWEN,B.GUARINO,L.E.ROSEN, JRNL AUTH 3 J.DI IULIO,J.JERAK,H.KAISER,S.ISLAM,S.JACONI,N.SPRUGASCI, JRNL AUTH 4 K.CULAP,R.ABDELNABI,C.FOO,L.COELMONT,I.BARTHA,S.BIANCHI, JRNL AUTH 5 C.SILACCI-FREGNI,J.BASSI,R.MARZI,E.VETTI,A.CASSOTTA, JRNL AUTH 6 A.CESCHI,P.FERRARI,P.E.CIPPA,O.GIANNINI,S.CERUTI,C.GARZONI, JRNL AUTH 7 A.RIVA,F.BENIGNI,E.CAMERONI,L.PICCOLI,M.S.PIZZUTO,M.SMITHEY, JRNL AUTH 8 D.HONG,A.TELENTI,F.A.LEMPP,J.NEYTS,C.HAVENAR-DAUGHTON, JRNL AUTH 9 A.LANZAVECCHIA,F.SALLUSTO,G.SNELL,H.W.VIRGIN,M.BELTRAMELLO, JRNL AUTH10 D.CORTI,D.VEESLER JRNL TITL BROAD BETACORONAVIRUS NEUTRALIZATION BY A STEM JRNL TITL 2 HELIX-SPECIFIC HUMAN ANTIBODY. JRNL REF SCIENCE V. 373 1109 2021 JRNL REFN ESSN 1095-9203 JRNL PMID 34344823 JRNL DOI 10.1126/SCIENCE.ABJ3321 REMARK 2 REMARK 2 RESOLUTION. 2.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.1_4122 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 16392 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.770 REMARK 3 FREE R VALUE TEST SET COUNT : 782 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.8400 - 4.8500 0.98 2823 134 0.2225 0.2365 REMARK 3 2 4.8500 - 3.8500 0.99 2655 139 0.1982 0.2204 REMARK 3 3 3.8500 - 3.3700 1.00 2644 131 0.2306 0.3129 REMARK 3 4 3.3600 - 3.0600 0.98 2560 139 0.2748 0.3865 REMARK 3 5 3.0600 - 2.8400 0.99 2609 123 0.3172 0.3600 REMARK 3 6 2.8400 - 2.6700 0.90 2319 116 0.3294 0.3829 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.420 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.640 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 67.14 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 87.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3125 REMARK 3 ANGLE : 0.527 4264 REMARK 3 CHIRALITY : 0.044 471 REMARK 3 PLANARITY : 0.005 557 REMARK 3 DIHEDRAL : 9.944 1044 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1146 THROUGH 1159) REMARK 3 ORIGIN FOR THE GROUP (A): -37.4940 60.9073 29.9411 REMARK 3 T TENSOR REMARK 3 T11: 0.7659 T22: 0.8556 REMARK 3 T33: 0.7009 T12: 0.0416 REMARK 3 T13: 0.2446 T23: -0.1948 REMARK 3 L TENSOR REMARK 3 L11: 7.0159 L22: 8.0928 REMARK 3 L33: 2.2839 L12: -1.6494 REMARK 3 L13: -3.1835 L23: -1.7943 REMARK 3 S TENSOR REMARK 3 S11: 0.7243 S12: -1.7910 S13: 1.7978 REMARK 3 S21: 0.9695 S22: -0.1132 S23: 0.7761 REMARK 3 S31: -1.8074 S32: -1.0357 S33: -0.5621 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 1 THROUGH 110) REMARK 3 ORIGIN FOR THE GROUP (A): -24.4226 58.2600 8.5067 REMARK 3 T TENSOR REMARK 3 T11: 0.5996 T22: 0.5550 REMARK 3 T33: 0.3154 T12: -0.0351 REMARK 3 T13: -0.0267 T23: -0.0684 REMARK 3 L TENSOR REMARK 3 L11: 3.4844 L22: 4.1286 REMARK 3 L33: 1.4155 L12: -0.2178 REMARK 3 L13: -0.7634 L23: -0.2726 REMARK 3 S TENSOR REMARK 3 S11: 0.0410 S12: 0.1395 S13: -0.0025 REMARK 3 S21: -0.7121 S22: -0.0175 S23: -0.1172 REMARK 3 S31: 0.0127 S32: -0.0088 S33: -0.0156 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 111 THROUGH 215) REMARK 3 ORIGIN FOR THE GROUP (A): -16.7644 29.1453 -13.3838 REMARK 3 T TENSOR REMARK 3 T11: 0.9115 T22: 0.9124 REMARK 3 T33: 1.1044 T12: 0.2677 REMARK 3 T13: 0.0495 T23: -0.4093 REMARK 3 L TENSOR REMARK 3 L11: 4.9763 L22: 9.0037 REMARK 3 L33: 2.1938 L12: 2.0241 REMARK 3 L13: 0.3925 L23: -0.6336 REMARK 3 S TENSOR REMARK 3 S11: 0.0904 S12: 0.6052 S13: -1.0792 REMARK 3 S21: -0.4567 S22: -0.6237 S23: 1.1386 REMARK 3 S31: 0.2895 S32: -0.5098 S33: 0.5638 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 1 THROUGH 118) REMARK 3 ORIGIN FOR THE GROUP (A): -35.5742 43.3980 20.5716 REMARK 3 T TENSOR REMARK 3 T11: 0.5606 T22: 0.5728 REMARK 3 T33: 0.3125 T12: -0.0872 REMARK 3 T13: -0.0586 T23: 0.0082 REMARK 3 L TENSOR REMARK 3 L11: 4.6744 L22: 6.8820 REMARK 3 L33: 2.9555 L12: 1.5197 REMARK 3 L13: -0.1998 L23: 2.3457 REMARK 3 S TENSOR REMARK 3 S11: 0.0890 S12: -0.1814 S13: -0.3338 REMARK 3 S21: 0.1617 S22: -0.1839 S23: 0.1617 REMARK 3 S31: 0.1761 S32: -0.2598 S33: 0.0845 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 119 THROUGH 213) REMARK 3 ORIGIN FOR THE GROUP (A): -19.5475 24.7236 3.3744 REMARK 3 T TENSOR REMARK 3 T11: 1.0986 T22: 0.6040 REMARK 3 T33: 1.7280 T12: 0.2610 REMARK 3 T13: 0.2243 T23: 0.2443 REMARK 3 L TENSOR REMARK 3 L11: 1.8950 L22: 2.8813 REMARK 3 L33: 3.8186 L12: 0.5597 REMARK 3 L13: -2.4078 L23: 0.7306 REMARK 3 S TENSOR REMARK 3 S11: -0.8012 S12: -0.9036 S13: -1.5896 REMARK 3 S21: 0.7528 S22: -0.0903 S23: 0.6854 REMARK 3 S31: 0.9605 S32: 0.5508 S33: 0.7705 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7RNJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1000257632. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-FEB-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16691 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.670 REMARK 200 RESOLUTION RANGE LOW (A) : 46.320 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.20300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 8.40 REMARK 200 R MERGE FOR SHELL (I) : 3.71400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: HOMOLOGY MODEL OF S2P6 FAB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 0.1 M SODIUM REMARK 280 ACETATE PH 4.6, 25% (V/V) PEG SMEAR BROAD, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 148.93867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 74.46933 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 111.70400 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 37.23467 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 186.17333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 148.93867 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 74.46933 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 37.23467 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 111.70400 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 186.17333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH L 413 LIES ON A SPECIAL POSITION. REMARK 375 HOH H 415 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1205 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR L 132 REMARK 465 ALA L 133 REMARK 465 LEU L 184 REMARK 465 SER L 185 REMARK 465 ASN L 213 REMARK 465 GLU L 216 REMARK 465 CYS L 217 REMARK 465 LYS H 122 REMARK 465 PRO H 128 REMARK 465 LEU H 129 REMARK 465 ALA H 130 REMARK 465 PRO H 131 REMARK 465 SER H 132 REMARK 465 SER H 133 REMARK 465 LYS H 134 REMARK 465 SER H 135 REMARK 465 THR H 136 REMARK 465 SER H 137 REMARK 465 GLY H 138 REMARK 465 LEU H 175 REMARK 465 GLN H 176 REMARK 465 ASN H 204 REMARK 465 LYS H 214 REMARK 465 ARG H 215 REMARK 465 VAL H 216 REMARK 465 GLU H 217 REMARK 465 PRO H 218 REMARK 465 LYS H 219 REMARK 465 SER H 220 REMARK 465 CYS H 221 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU L 1 CG CD OE1 OE2 REMARK 470 GLU L 17 OE1 OE2 REMARK 470 ARG L 24 CG CD NE CZ NH1 NH2 REMARK 470 GLU L 82 CG CD OE1 OE2 REMARK 470 SER L 95 OG REMARK 470 LYS L 106 CG CD CE NZ REMARK 470 VAL L 118 CG1 CG2 REMARK 470 ILE L 120 CG1 CG2 CD1 REMARK 470 SER L 124 OG REMARK 470 ASP L 125 CG OD1 OD2 REMARK 470 GLN L 127 CG CD OE1 NE2 REMARK 470 LEU L 128 CG CD1 CD2 REMARK 470 LYS L 129 CG CD CE NZ REMARK 470 SER L 130 OG REMARK 470 SER L 134 OG REMARK 470 VAL L 135 CG1 CG2 REMARK 470 VAL L 136 CG1 CG2 REMARK 470 LYS L 148 CG CD CE NZ REMARK 470 LYS L 152 CG CD CE NZ REMARK 470 VAL L 153 CG1 CG2 REMARK 470 LEU L 157 CG CD1 CD2 REMARK 470 SER L 159 OG REMARK 470 GLN L 163 CG CD OE1 NE2 REMARK 470 SER L 171 OG REMARK 470 LEU L 178 CG CD1 CD2 REMARK 470 LEU L 182 CG CD1 CD2 REMARK 470 THR L 183 OG1 CG2 REMARK 470 LYS L 186 CG CD CE NZ REMARK 470 LYS L 191 CG CD CE NZ REMARK 470 LYS L 193 CG CD CE NZ REMARK 470 VAL L 194 CG1 CG2 REMARK 470 VAL L 199 CG1 CG2 REMARK 470 SER L 206 OG REMARK 470 SER L 211 OG REMARK 470 VAL H 11 CG1 CG2 REMARK 470 GLU H 89 OE1 OE2 REMARK 470 SER H 117 OG REMARK 470 SER H 120 OG REMARK 470 SER H 125 OG REMARK 470 VAL H 126 CG1 CG2 REMARK 470 PHE H 127 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU H 143 CG CD1 CD2 REMARK 470 LEU H 146 CG CD1 CD2 REMARK 470 LYS H 148 CG CD CE NZ REMARK 470 ASP H 149 CG OD1 OD2 REMARK 470 TYR H 150 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU H 153 CG CD OE1 OE2 REMARK 470 VAL H 155 CG1 CG2 REMARK 470 THR H 156 OG1 CG2 REMARK 470 VAL H 157 CG1 CG2 REMARK 470 SER H 158 OG REMARK 470 ASN H 160 CG OD1 ND2 REMARK 470 SER H 161 OG REMARK 470 LEU H 164 CG CD1 CD2 REMARK 470 THR H 165 OG1 CG2 REMARK 470 SER H 166 OG REMARK 470 VAL H 174 CG1 CG2 REMARK 470 SER H 177 OG REMARK 470 LEU H 180 CG CD1 CD2 REMARK 470 SER H 182 OG REMARK 470 VAL H 186 CG1 CG2 REMARK 470 VAL H 189 CG1 CG2 REMARK 470 SER H 191 OG REMARK 470 SER H 192 OG REMARK 470 SER H 193 OG REMARK 470 LEU H 194 CG CD1 CD2 REMARK 470 GLN H 197 CG CD OE1 NE2 REMARK 470 THR H 198 OG1 CG2 REMARK 470 ILE H 200 CG1 CG2 CD1 REMARK 470 VAL H 203 CG1 CG2 REMARK 470 HIS H 205 CG ND1 CD2 CE1 NE2 REMARK 470 LYS H 206 CG CD CE NZ REMARK 470 THR H 210 OG1 CG2 REMARK 470 LYS H 211 CG CD CE NZ REMARK 470 VAL H 212 CG1 CG2 REMARK 470 LYS B1154 CG CD CE NZ REMARK 470 LYS B1157 CG CD CE NZ REMARK 470 ASN B1158 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA L 52 -41.95 69.83 REMARK 500 ASN L 141 84.24 57.59 REMARK 500 ASN L 161 31.13 -158.36 REMARK 500 LYS L 193 -63.74 -126.32 REMARK 500 ASP H 149 83.75 57.41 REMARK 500 PRO H 154 -165.62 -104.25 REMARK 500 ASN H 209 48.27 38.98 REMARK 500 REMARK 500 REMARK: NULL DBREF 7RNJ L 1 217 PDB 7RNJ 7RNJ 1 217 DBREF 7RNJ H 1 221 PDB 7RNJ 7RNJ 1 221 DBREF 7RNJ B 1146 1159 UNP P0DTC2 SPIKE_SARS2 1146 1159 SEQRES 1 L 217 GLU ILE VAL MET MET GLN SER PRO GLY THR LEU SER LEU SEQRES 2 L 217 SER PRO GLY GLU ARG ALA THR LEU SER CYS ARG ALA SER SEQRES 3 L 217 GLN SER VAL ARG SER ASN TYR LEU ALA TRP TYR GLN GLN SEQRES 4 L 217 LYS PRO GLY GLN ALA PRO ARG LEU LEU ILE TYR GLY ALA SEQRES 5 L 217 SER SER ARG ALA THR GLY ILE PRO ASP ARG PHE SER GLY SEQRES 6 L 217 SER GLY SER GLY THR ASP PHE THR LEU THR ILE SER ARG SEQRES 7 L 217 LEU GLU PRO GLU ASP PHE ALA VAL TYR TYR CYS GLN GLN SEQRES 8 L 217 TYR GLY SER SER PRO PRO ARG PHE THR PHE GLY PRO GLY SEQRES 9 L 217 THR LYS VAL GLU ILE LYS ARG THR VAL ALA ALA PRO SER SEQRES 10 L 217 VAL PHE ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER SEQRES 11 L 217 GLY THR ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR SEQRES 12 L 217 PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA SEQRES 13 L 217 LEU GLN SER GLY ASN SER GLN GLU SER VAL THR GLU GLN SEQRES 14 L 217 ASP SER LYS ASP SER THR TYR SER LEU SER SER THR LEU SEQRES 15 L 217 THR LEU SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR SEQRES 16 L 217 ALA CYS GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL SEQRES 17 L 217 THR LYS SER PHE ASN ARG GLY GLU CYS SEQRES 1 H 221 GLU VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 221 PRO GLY ALA SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 H 221 TYR THR PHE THR SER GLN TYR MET HIS TRP VAL ARG GLN SEQRES 4 H 221 ALA PRO GLY GLN GLY LEU GLU TRP ILE GLY ILE ILE ASN SEQRES 5 H 221 PRO SER GLY VAL HIS THR SER TYR ALA GLN LYS PHE GLN SEQRES 6 H 221 GLY ARG VAL THR LEU THR ARG ASP THR SER THR SER THR SEQRES 7 H 221 LEU TYR MET GLU LEU SER SER LEU ARG SER GLU ASP THR SEQRES 8 H 221 ALA VAL TYR TYR CYS ALA ARG GLY SER PRO LYS GLY ALA SEQRES 9 H 221 PHE ASP TYR TRP GLY GLN GLY THR LEU VAL THR VAL SER SEQRES 10 H 221 SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA SEQRES 11 H 221 PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA LEU SEQRES 12 H 221 GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR SEQRES 13 H 221 VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS SEQRES 14 H 221 THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER SEQRES 15 H 221 LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY SEQRES 16 H 221 THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER SEQRES 17 H 221 ASN THR LYS VAL ASP LYS ARG VAL GLU PRO LYS SER CYS SEQRES 1 B 14 ASP SER PHE LYS GLU GLU LEU ASP LYS TYR PHE LYS ASN SEQRES 2 B 14 HIS HET SO4 L 301 5 HET SO4 H 301 5 HET SO4 H 302 5 HET SO4 H 303 5 HETNAM SO4 SULFATE ION FORMUL 4 SO4 4(O4 S 2-) FORMUL 8 HOH *69(H2 O) HELIX 1 AA1 VAL L 29 ASN L 32 5 4 HELIX 2 AA2 GLU L 80 PHE L 84 5 5 HELIX 3 AA3 SER L 124 LYS L 129 1 6 HELIX 4 AA4 GLY H 26 SER H 31 1 6 HELIX 5 AA5 GLN H 62 GLN H 65 5 4 HELIX 6 AA6 ARG H 87 THR H 91 5 5 HELIX 7 AA7 SER H 161 ALA H 163 5 3 HELIX 8 AA8 SER B 1147 HIS B 1159 1 13 SHEET 1 AA1 4 MET L 4 SER L 7 0 SHEET 2 AA1 4 ALA L 19 ALA L 25 -1 O ARG L 24 N MET L 5 SHEET 3 AA1 4 ASP L 71 ILE L 76 -1 O LEU L 74 N LEU L 21 SHEET 4 AA1 4 PHE L 63 SER L 68 -1 N SER L 64 O THR L 75 SHEET 1 AA2 6 THR L 10 LEU L 13 0 SHEET 2 AA2 6 THR L 105 ILE L 109 1 O GLU L 108 N LEU L 11 SHEET 3 AA2 6 ALA L 85 GLY L 93 -1 N ALA L 85 O VAL L 107 SHEET 4 AA2 6 LEU L 34 GLN L 39 -1 N TYR L 37 O TYR L 88 SHEET 5 AA2 6 ARG L 46 TYR L 50 -1 O ARG L 46 N GLN L 38 SHEET 6 AA2 6 SER L 54 ARG L 55 -1 O SER L 54 N TYR L 50 SHEET 1 AA3 4 THR L 10 LEU L 13 0 SHEET 2 AA3 4 THR L 105 ILE L 109 1 O GLU L 108 N LEU L 11 SHEET 3 AA3 4 ALA L 85 GLY L 93 -1 N ALA L 85 O VAL L 107 SHEET 4 AA3 4 ARG L 98 PHE L 101 -1 O ARG L 98 N GLY L 93 SHEET 1 AA4 3 SER L 117 PHE L 121 0 SHEET 2 AA4 3 VAL L 135 PHE L 142 -1 O LEU L 138 N PHE L 119 SHEET 3 AA4 3 TYR L 176 LEU L 182 -1 O LEU L 182 N VAL L 135 SHEET 1 AA5 3 LYS L 148 VAL L 153 0 SHEET 2 AA5 3 TYR L 195 THR L 200 -1 O GLU L 198 N GLN L 150 SHEET 3 AA5 3 VAL L 208 PHE L 212 -1 O VAL L 208 N VAL L 199 SHEET 1 AA6 4 VAL H 5 GLN H 6 0 SHEET 2 AA6 4 VAL H 18 LYS H 23 -1 O LYS H 23 N VAL H 5 SHEET 3 AA6 4 THR H 78 LEU H 83 -1 O LEU H 79 N CYS H 22 SHEET 4 AA6 4 VAL H 68 ASP H 73 -1 N ASP H 73 O THR H 78 SHEET 1 AA7 6 GLU H 10 LYS H 12 0 SHEET 2 AA7 6 THR H 112 VAL H 116 1 O THR H 115 N LYS H 12 SHEET 3 AA7 6 ALA H 92 GLY H 99 -1 N TYR H 94 O THR H 112 SHEET 4 AA7 6 MET H 34 GLN H 39 -1 N VAL H 37 O TYR H 95 SHEET 5 AA7 6 GLU H 46 ILE H 51 -1 O ILE H 48 N TRP H 36 SHEET 6 AA7 6 THR H 58 TYR H 60 -1 O SER H 59 N ILE H 50 SHEET 1 AA8 4 GLU H 10 LYS H 12 0 SHEET 2 AA8 4 THR H 112 VAL H 116 1 O THR H 115 N LYS H 12 SHEET 3 AA8 4 ALA H 92 GLY H 99 -1 N TYR H 94 O THR H 112 SHEET 4 AA8 4 PHE H 105 TRP H 108 -1 O TYR H 107 N ARG H 98 SHEET 1 AA9 4 SER H 125 PHE H 127 0 SHEET 2 AA9 4 THR H 140 TYR H 150 -1 O LYS H 148 N SER H 125 SHEET 3 AA9 4 TYR H 181 PRO H 190 -1 O TYR H 181 N TYR H 150 SHEET 4 AA9 4 HIS H 169 THR H 170 -1 N HIS H 169 O VAL H 186 SHEET 1 AB1 2 SER H 158 TRP H 159 0 SHEET 2 AB1 2 CYS H 201 ASN H 202 -1 O ASN H 202 N SER H 158 SSBOND 1 CYS L 23 CYS L 89 1555 1555 2.04 SSBOND 2 CYS L 137 CYS L 197 1555 1555 2.03 SSBOND 3 CYS H 22 CYS H 96 1555 1555 2.04 SSBOND 4 CYS H 145 CYS H 201 1555 1555 2.03 CISPEP 1 SER L 7 PRO L 8 0 -2.46 CISPEP 2 SER L 95 PRO L 96 0 -3.83 CISPEP 3 TYR L 143 PRO L 144 0 3.16 CISPEP 4 PHE H 151 PRO H 152 0 -4.82 CISPEP 5 GLU H 153 PRO H 154 0 -3.08 CRYST1 92.642 92.642 223.408 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010794 0.006232 0.000000 0.00000 SCALE2 0.000000 0.012464 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004476 0.00000