HEADER PEPTIDE BINDING PROTEIN 29-JUL-21 7RNU TITLE NSH2 DOMAIN OF P85-BETA SUBUNIT OF PHOSPHATIDYLINOSITOL 3-KINASE IN TITLE 2 COMPLEX WITH AN ACTIN PEPTIDE WITH PHOSPHORYLATED TYROSINE 53 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHATIDYLINOSITOL 3-KINASE REGULATORY SUBUNIT BETA; COMPND 3 CHAIN: A, C, E, G; COMPND 4 FRAGMENT: NSH2 DOMAIN (UNP RESIDUES 318-428); COMPND 5 SYNONYM: PI3-KINASE REGULATORY SUBUNIT BETA,PI3K REGULATORY SUBUNIT COMPND 6 BETA,PTDINS-3-KINASE REGULATORY SUBUNIT BETA,PHOSPHATIDYLINOSITOL 3- COMPND 7 KINASE 85 KDA REGULATORY SUBUNIT BETA,PI3-KINASE SUBUNIT P85-BETA, COMPND 8 PTDINS-3-KINASE REGULATORY SUBUNIT P85-BETA; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: ACTIN, ALPHA SKELETAL MUSCLE; COMPND 12 CHAIN: B, D, F, H; COMPND 13 FRAGMENT: UNP RESIDUES 52-60; COMPND 14 SYNONYM: ALPHA-ACTIN-1; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PIK3R2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS PHOSPHORYLATED TYROSINE BINDING PROTEIN, ACTIN PEPTIDE, PEPTIDE KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.DAI,J.R.HORTON,X.CHENG REVDAT 3 15-NOV-23 7RNU 1 REMARK REVDAT 2 18-OCT-23 7RNU 1 REMARK REVDAT 1 11-AUG-21 7RNU 0 JRNL AUTH A.AMELIE,S.DAI,X.SHEN,J.R.HORTON,X.ZHANG,X.CHENG JRNL TITL THE FUNCTIONAL ANALYSIS OF A MAJOR TYROSINE PHOSPHORYLATION JRNL TITL 2 SITE ON ACTIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.5 REMARK 3 NUMBER OF REFLECTIONS : 79820 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.510 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.9200 - 3.4900 0.97 6263 161 0.1551 0.1739 REMARK 3 2 3.4900 - 2.7700 0.99 6236 160 0.1742 0.2162 REMARK 3 3 2.7700 - 2.4200 0.97 6038 155 0.1896 0.2225 REMARK 3 4 2.4200 - 2.2000 0.99 6183 159 0.1867 0.2155 REMARK 3 5 2.2000 - 2.0400 0.99 6177 159 0.1901 0.2276 REMARK 3 6 2.0400 - 1.9200 1.00 6178 158 0.1975 0.2290 REMARK 3 7 1.9200 - 1.8300 0.98 6100 158 0.2038 0.2399 REMARK 3 8 1.8300 - 1.7500 0.95 5897 151 0.2281 0.2546 REMARK 3 9 1.7500 - 1.6800 0.97 6032 155 0.2296 0.2567 REMARK 3 10 1.6800 - 1.6200 0.95 5835 150 0.2488 0.3203 REMARK 3 11 1.6200 - 1.5700 0.87 5394 139 0.2549 0.2971 REMARK 3 12 1.5700 - 1.5300 0.77 4722 121 0.2671 0.2927 REMARK 3 13 1.5300 - 1.4900 0.64 3976 102 0.2725 0.3073 REMARK 3 14 1.4900 - 1.4500 0.45 2789 72 0.3058 0.3259 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.173 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.443 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.07 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3886 REMARK 3 ANGLE : 0.832 5275 REMARK 3 CHIRALITY : 0.072 555 REMARK 3 PLANARITY : 0.005 679 REMARK 3 DIHEDRAL : 26.280 1413 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7RNU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1000258637. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-SEP-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79846 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 34.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.7 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 2IUI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% W/V PEG1500, 100 MM MIB, PH 5.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 94.04150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.71600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 94.04150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.71600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C 703 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 707 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 318 REMARK 465 SER A 319 REMARK 465 MET A 320 REMARK 465 ASN A 321 REMARK 465 GLY A 322 REMARK 465 GLY A 323 REMARK 465 SER A 324 REMARK 465 LYS B 50 REMARK 465 ASP B 56 REMARK 465 GLU B 57 REMARK 465 ALA B 58 REMARK 465 GLY C 318 REMARK 465 SER C 319 REMARK 465 MET C 320 REMARK 465 ASN C 321 REMARK 465 GLY E 318 REMARK 465 SER E 319 REMARK 465 MET E 320 REMARK 465 ASN E 321 REMARK 465 GLY E 322 REMARK 465 GLY E 323 REMARK 465 SER E 324 REMARK 465 PRO E 325 REMARK 465 ALA F 58 REMARK 465 GLY G 318 REMARK 465 SER G 319 REMARK 465 MET G 320 REMARK 465 ASN G 321 REMARK 465 GLY G 322 REMARK 465 LYS H 50 REMARK 465 ALA H 58 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 387 CG OD1 OD2 REMARK 470 GLN A 415 CG CD OE1 NE2 REMARK 470 LYS A 419 CG CD CE NZ REMARK 470 GLN C 365 CG CD OE1 NE2 REMARK 470 ARG C 386 CG CD NE CZ NH1 NH2 REMARK 470 ASP C 387 CG OD1 OD2 REMARK 470 LYS D 50 CG CD CE NZ REMARK 470 GLU E 345 CG CD OE1 OE2 REMARK 470 ARG E 348 CG CD NE CZ NH1 NH2 REMARK 470 GLN E 415 CD OE1 NE2 REMARK 470 LYS F 50 CD CE NZ REMARK 470 GLU G 345 CG CD OE1 OE2 REMARK 470 ARG G 348 CG CD NE CZ NH1 NH2 REMARK 470 ASP G 349 CG OD1 OD2 REMARK 470 GLN G 365 CG CD OE1 NE2 REMARK 470 LYS G 419 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU C 367 O HOH C 601 2.08 REMARK 500 O GLN E 415 O HOH E 501 2.15 REMARK 500 O HOH E 570 O HOH E 588 2.15 REMARK 500 O HOH C 664 O HOH C 705 2.17 REMARK 500 O HOH C 678 O HOH C 693 2.17 REMARK 500 OD1 ASN C 344 O HOH C 602 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 691 O HOH G 667 1565 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU C 420 62.29 -114.91 REMARK 500 LEU E 420 66.23 -107.82 REMARK 500 LEU G 420 53.00 -108.18 REMARK 500 REMARK 500 REMARK: NULL DBREF 7RNU A 321 431 UNP O00459 P85B_HUMAN 318 428 DBREF 7RNU B 50 58 UNP P68133 ACTS_HUMAN 52 60 DBREF 7RNU C 321 431 UNP O00459 P85B_HUMAN 318 428 DBREF 7RNU D 50 58 UNP P68133 ACTS_HUMAN 52 60 DBREF 7RNU E 321 431 UNP O00459 P85B_HUMAN 318 428 DBREF 7RNU F 50 58 UNP P68133 ACTS_HUMAN 52 60 DBREF 7RNU G 321 431 UNP O00459 P85B_HUMAN 318 428 DBREF 7RNU H 50 58 UNP P68133 ACTS_HUMAN 52 60 SEQADV 7RNU GLY A 318 UNP O00459 EXPRESSION TAG SEQADV 7RNU SER A 319 UNP O00459 EXPRESSION TAG SEQADV 7RNU MET A 320 UNP O00459 EXPRESSION TAG SEQADV 7RNU GLY C 318 UNP O00459 EXPRESSION TAG SEQADV 7RNU SER C 319 UNP O00459 EXPRESSION TAG SEQADV 7RNU MET C 320 UNP O00459 EXPRESSION TAG SEQADV 7RNU GLY E 318 UNP O00459 EXPRESSION TAG SEQADV 7RNU SER E 319 UNP O00459 EXPRESSION TAG SEQADV 7RNU MET E 320 UNP O00459 EXPRESSION TAG SEQADV 7RNU GLY G 318 UNP O00459 EXPRESSION TAG SEQADV 7RNU SER G 319 UNP O00459 EXPRESSION TAG SEQADV 7RNU MET G 320 UNP O00459 EXPRESSION TAG SEQRES 1 A 114 GLY SER MET ASN GLY GLY SER PRO PRO SER LEU GLN ASP SEQRES 2 A 114 ALA GLU TRP TYR TRP GLY ASP ILE SER ARG GLU GLU VAL SEQRES 3 A 114 ASN GLU LYS LEU ARG ASP THR PRO ASP GLY THR PHE LEU SEQRES 4 A 114 VAL ARG ASP ALA SER SER LYS ILE GLN GLY GLU TYR THR SEQRES 5 A 114 LEU THR LEU ARG LYS GLY GLY ASN ASN LYS LEU ILE LYS SEQRES 6 A 114 VAL PHE HIS ARG ASP GLY HIS TYR GLY PHE SER GLU PRO SEQRES 7 A 114 LEU THR PHE CYS SER VAL VAL ASP LEU ILE ASN HIS TYR SEQRES 8 A 114 ARG HIS GLU SER LEU ALA GLN TYR ASN ALA LYS LEU ASP SEQRES 9 A 114 THR ARG LEU LEU TYR PRO VAL SER LYS TYR SEQRES 1 B 9 LYS ASP SER PTR VAL GLY ASP GLU ALA SEQRES 1 C 114 GLY SER MET ASN GLY GLY SER PRO PRO SER LEU GLN ASP SEQRES 2 C 114 ALA GLU TRP TYR TRP GLY ASP ILE SER ARG GLU GLU VAL SEQRES 3 C 114 ASN GLU LYS LEU ARG ASP THR PRO ASP GLY THR PHE LEU SEQRES 4 C 114 VAL ARG ASP ALA SER SER LYS ILE GLN GLY GLU TYR THR SEQRES 5 C 114 LEU THR LEU ARG LYS GLY GLY ASN ASN LYS LEU ILE LYS SEQRES 6 C 114 VAL PHE HIS ARG ASP GLY HIS TYR GLY PHE SER GLU PRO SEQRES 7 C 114 LEU THR PHE CYS SER VAL VAL ASP LEU ILE ASN HIS TYR SEQRES 8 C 114 ARG HIS GLU SER LEU ALA GLN TYR ASN ALA LYS LEU ASP SEQRES 9 C 114 THR ARG LEU LEU TYR PRO VAL SER LYS TYR SEQRES 1 D 9 LYS ASP SER PTR VAL GLY ASP GLU ALA SEQRES 1 E 114 GLY SER MET ASN GLY GLY SER PRO PRO SER LEU GLN ASP SEQRES 2 E 114 ALA GLU TRP TYR TRP GLY ASP ILE SER ARG GLU GLU VAL SEQRES 3 E 114 ASN GLU LYS LEU ARG ASP THR PRO ASP GLY THR PHE LEU SEQRES 4 E 114 VAL ARG ASP ALA SER SER LYS ILE GLN GLY GLU TYR THR SEQRES 5 E 114 LEU THR LEU ARG LYS GLY GLY ASN ASN LYS LEU ILE LYS SEQRES 6 E 114 VAL PHE HIS ARG ASP GLY HIS TYR GLY PHE SER GLU PRO SEQRES 7 E 114 LEU THR PHE CYS SER VAL VAL ASP LEU ILE ASN HIS TYR SEQRES 8 E 114 ARG HIS GLU SER LEU ALA GLN TYR ASN ALA LYS LEU ASP SEQRES 9 E 114 THR ARG LEU LEU TYR PRO VAL SER LYS TYR SEQRES 1 F 9 LYS ASP SER PTR VAL GLY ASP GLU ALA SEQRES 1 G 114 GLY SER MET ASN GLY GLY SER PRO PRO SER LEU GLN ASP SEQRES 2 G 114 ALA GLU TRP TYR TRP GLY ASP ILE SER ARG GLU GLU VAL SEQRES 3 G 114 ASN GLU LYS LEU ARG ASP THR PRO ASP GLY THR PHE LEU SEQRES 4 G 114 VAL ARG ASP ALA SER SER LYS ILE GLN GLY GLU TYR THR SEQRES 5 G 114 LEU THR LEU ARG LYS GLY GLY ASN ASN LYS LEU ILE LYS SEQRES 6 G 114 VAL PHE HIS ARG ASP GLY HIS TYR GLY PHE SER GLU PRO SEQRES 7 G 114 LEU THR PHE CYS SER VAL VAL ASP LEU ILE ASN HIS TYR SEQRES 8 G 114 ARG HIS GLU SER LEU ALA GLN TYR ASN ALA LYS LEU ASP SEQRES 9 G 114 THR ARG LEU LEU TYR PRO VAL SER LYS TYR SEQRES 1 H 9 LYS ASP SER PTR VAL GLY ASP GLU ALA MODRES 7RNU PTR B 53 TYR MODIFIED RESIDUE MODRES 7RNU PTR D 53 TYR MODIFIED RESIDUE MODRES 7RNU PTR F 53 TYR MODIFIED RESIDUE MODRES 7RNU PTR H 53 TYR MODIFIED RESIDUE HET PTR B 53 16 HET PTR D 53 16 HET PTR F 53 16 HET PTR H 53 16 HET EDO A 501 4 HET EDO A 502 4 HET EDO A 503 4 HET EDO C 501 4 HET EDO C 502 4 HET EDO C 503 4 HET EDO G 501 4 HET EDO G 502 4 HETNAM PTR O-PHOSPHOTYROSINE HETNAM EDO 1,2-ETHANEDIOL HETSYN PTR PHOSPHONOTYROSINE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 PTR 4(C9 H12 N O6 P) FORMUL 9 EDO 8(C2 H6 O2) FORMUL 17 HOH *404(H2 O) HELIX 1 AA1 SER A 339 ARG A 348 1 10 HELIX 2 AA2 SER A 400 ARG A 409 1 10 HELIX 3 AA3 SER A 412 TYR A 416 5 5 HELIX 4 AA4 SER C 339 ARG C 348 1 10 HELIX 5 AA5 SER C 400 GLU C 411 1 12 HELIX 6 AA6 SER C 412 TYR C 416 5 5 HELIX 7 AA7 SER E 339 ARG E 348 1 10 HELIX 8 AA8 SER E 400 GLU E 411 1 12 HELIX 9 AA9 SER E 412 TYR E 416 5 5 HELIX 10 AB1 SER G 339 ARG G 348 1 10 HELIX 11 AB2 SER G 400 GLU G 411 1 12 HELIX 12 AB3 SER G 412 TYR G 416 5 5 SHEET 1 AA1 5 HIS A 389 GLY A 391 0 SHEET 2 AA1 5 ASN A 377 ARG A 386 -1 N PHE A 384 O GLY A 391 SHEET 3 AA1 5 TYR A 368 LYS A 374 -1 N LEU A 372 O LYS A 379 SHEET 4 AA1 5 THR A 354 ASP A 359 -1 N THR A 354 O ARG A 373 SHEET 5 AA1 5 TYR A 426 PRO A 427 1 O TYR A 426 N PHE A 355 SHEET 1 AA2 5 HIS C 389 GLY C 391 0 SHEET 2 AA2 5 ASN C 377 ARG C 386 -1 N PHE C 384 O GLY C 391 SHEET 3 AA2 5 TYR C 368 LYS C 374 -1 N LEU C 372 O LYS C 379 SHEET 4 AA2 5 THR C 354 ASP C 359 -1 N ARG C 358 O THR C 369 SHEET 5 AA2 5 TYR C 426 PRO C 427 1 O TYR C 426 N PHE C 355 SHEET 1 AA3 3 HIS C 389 GLY C 391 0 SHEET 2 AA3 3 ASN C 377 ARG C 386 -1 N PHE C 384 O GLY C 391 SHEET 3 AA3 3 SER D 52 PTR D 53 1 O SER D 52 N LEU C 380 SHEET 1 AA4 5 HIS E 389 GLY E 391 0 SHEET 2 AA4 5 ASN E 377 ARG E 386 -1 N PHE E 384 O GLY E 391 SHEET 3 AA4 5 TYR E 368 LYS E 374 -1 N LEU E 372 O LYS E 379 SHEET 4 AA4 5 THR E 354 ASP E 359 -1 N LEU E 356 O THR E 371 SHEET 5 AA4 5 TYR E 426 PRO E 427 1 O TYR E 426 N PHE E 355 SHEET 1 AA5 3 HIS E 389 GLY E 391 0 SHEET 2 AA5 3 ASN E 377 ARG E 386 -1 N PHE E 384 O GLY E 391 SHEET 3 AA5 3 SER F 52 PTR F 53 1 O SER F 52 N LEU E 380 SHEET 1 AA6 5 TYR G 334 GLY G 336 0 SHEET 2 AA6 5 THR G 354 ASP G 359 1 O VAL G 357 N TRP G 335 SHEET 3 AA6 5 TYR G 368 LYS G 374 -1 O THR G 369 N ARG G 358 SHEET 4 AA6 5 ASN G 377 ARG G 386 -1 O LYS G 379 N LEU G 372 SHEET 5 AA6 5 TYR G 426 PRO G 427 0 SHEET 1 AA7 5 HIS G 389 GLY G 391 0 SHEET 2 AA7 5 ASN G 377 ARG G 386 -1 N PHE G 384 O GLY G 391 SHEET 3 AA7 5 TYR G 368 LYS G 374 -1 N LEU G 372 O LYS G 379 SHEET 4 AA7 5 THR G 354 ASP G 359 -1 N ARG G 358 O THR G 369 SHEET 5 AA7 5 SER H 52 PTR H 53 0 SSBOND 1 CYS A 399 CYS C 399 1555 1545 2.04 LINK C SER B 52 N PTR B 53 1555 1555 1.33 LINK C PTR B 53 N VAL B 54 1555 1555 1.33 LINK C SER D 52 N PTR D 53 1555 1555 1.33 LINK C PTR D 53 N VAL D 54 1555 1555 1.33 LINK C SER F 52 N PTR F 53 1555 1555 1.33 LINK C PTR F 53 N VAL F 54 1555 1555 1.33 LINK C SER H 52 N PTR H 53 1555 1555 1.33 LINK C PTR H 53 N VAL H 54 1555 1555 1.33 CISPEP 1 GLU A 394 PRO A 395 0 -0.14 CISPEP 2 GLU C 394 PRO C 395 0 3.52 CISPEP 3 GLU E 394 PRO E 395 0 -2.54 CISPEP 4 GLU G 394 PRO G 395 0 -4.05 CRYST1 188.083 41.432 65.875 90.00 100.29 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005317 0.000000 0.000966 0.00000 SCALE2 0.000000 0.024136 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015429 0.00000