HEADER HYDROLASE/IMMUNE SYSTEM 03-AUG-21 7RP2 TITLE CRYSTAL STRUCTURE OF KAS G12C IN COMPLEX WITH 2H11 CLAMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE KRAS; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: K-RAS 2,KI-RAS,C-K-RAS,C-KI-RAS; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: IMMUNOGLOBULIN IGG HEAVY CHAIN; COMPND 9 CHAIN: H; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: IMMUNOGLOBULIN IGG LIGHT CHAIN; COMPND 13 CHAIN: I; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KRAS, KRAS2, RASK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 MOL_ID: 3; SOURCE 15 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 16 ORGANISM_COMMON: HUMAN; SOURCE 17 ORGANISM_TAXID: 9606; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GTPASE, ANTIBODY, CONFORMATION-SPECIFIC, HYDROLASE-IMMUNE SYSTEM KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.OH,C.TAM,W.WANG REVDAT 4 16-OCT-24 7RP2 1 REMARK REVDAT 3 18-OCT-23 7RP2 1 REMARK REVDAT 2 01-JUN-22 7RP2 1 JRNL REVDAT 1 16-MAR-22 7RP2 0 JRNL AUTH C.W.DAVIES,A.J.OH,R.MROUE,M.STEFFEK,J.M.BRUNING,Y.XIAO, JRNL AUTH 2 S.FENG,S.JAYAKAR,E.CHAN,V.ARUMUGAM,S.C.URIBE,J.DRUMMOND, JRNL AUTH 3 A.FROMMLET,C.LU,Y.FRANKE,M.MERCHANT,H.KOEPPEN,J.G.QUINN, JRNL AUTH 4 S.MALHOTRA,S.DO,L.GAZZARD,H.E.PURKEY,J.RUDOLPH, JRNL AUTH 5 M.M.MULVIHILL,J.T.KOERBER,W.WANG,M.EVANGELISTA JRNL TITL CONFORMATION-LOCKING ANTIBODIES FOR THE DISCOVERY AND JRNL TITL 2 CHARACTERIZATION OF KRAS INHIBITORS. JRNL REF NAT.BIOTECHNOL. V. 40 769 2022 JRNL REFN ISSN 1087-0156 JRNL PMID 34992247 JRNL DOI 10.1038/S41587-021-01126-9 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12-2829_FINAL REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.050 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 92744 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 4587 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.4900 - 6.8298 0.98 2889 145 0.1311 0.1516 REMARK 3 2 6.8298 - 5.4233 0.97 2925 158 0.1893 0.1911 REMARK 3 3 5.4233 - 4.7385 0.99 2855 177 0.1504 0.1799 REMARK 3 4 4.7385 - 4.3055 0.99 2967 135 0.1425 0.1625 REMARK 3 5 4.3055 - 3.9971 0.98 2904 127 0.1690 0.1845 REMARK 3 6 3.9971 - 3.7615 0.98 2940 132 0.1798 0.2047 REMARK 3 7 3.7615 - 3.5732 0.98 2901 136 0.2034 0.1996 REMARK 3 8 3.5732 - 3.4177 0.99 2948 134 0.2108 0.2505 REMARK 3 9 3.4177 - 3.2861 0.99 2940 125 0.2177 0.2122 REMARK 3 10 3.2861 - 3.1728 0.99 2938 155 0.2166 0.2514 REMARK 3 11 3.1728 - 3.0736 0.99 2948 163 0.2200 0.2183 REMARK 3 12 3.0736 - 2.9857 1.00 2887 180 0.2429 0.2466 REMARK 3 13 2.9857 - 2.9071 1.00 2998 154 0.2415 0.2665 REMARK 3 14 2.9071 - 2.8362 1.00 2932 160 0.2434 0.2364 REMARK 3 15 2.8362 - 2.7718 1.00 2920 159 0.2556 0.2448 REMARK 3 16 2.7718 - 2.7128 1.00 3007 157 0.2708 0.2693 REMARK 3 17 2.7128 - 2.6585 1.00 2878 160 0.2878 0.2830 REMARK 3 18 2.6585 - 2.6084 1.00 2996 154 0.2949 0.2799 REMARK 3 19 2.6084 - 2.5618 1.00 2999 165 0.3051 0.3610 REMARK 3 20 2.5618 - 2.5183 1.00 2971 144 0.2979 0.3864 REMARK 3 21 2.5183 - 2.4777 1.00 2870 146 0.3212 0.3270 REMARK 3 22 2.4777 - 2.4396 1.00 3005 146 0.3399 0.3653 REMARK 3 23 2.4396 - 2.4037 1.00 2949 142 0.3417 0.3075 REMARK 3 24 2.4037 - 2.3699 0.99 2943 133 0.3547 0.3264 REMARK 3 25 2.3699 - 2.3378 0.99 2985 151 0.3623 0.3421 REMARK 3 26 2.3378 - 2.3075 1.00 2926 173 0.3607 0.4030 REMARK 3 27 2.3075 - 2.2786 1.00 2948 162 0.4121 0.4251 REMARK 3 28 2.2786 - 2.2512 1.00 2980 165 0.4083 0.4511 REMARK 3 29 2.2512 - 2.2250 0.99 2876 164 0.4159 0.3857 REMARK 3 30 2.2250 - 2.2000 0.99 2932 185 0.4304 0.3946 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.440 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.66 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 79.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4802 REMARK 3 ANGLE : 0.991 6533 REMARK 3 CHIRALITY : 0.071 734 REMARK 3 PLANARITY : 0.008 827 REMARK 3 DIHEDRAL : 15.224 2862 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 0:169 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.019 39.048 47.031 REMARK 3 T TENSOR REMARK 3 T11: 0.8601 T22: 1.4354 REMARK 3 T33: 0.5565 T12: 0.0865 REMARK 3 T13: -0.0096 T23: 0.0102 REMARK 3 L TENSOR REMARK 3 L11: 0.7234 L22: 0.7028 REMARK 3 L33: 0.8267 L12: 0.1032 REMARK 3 L13: 0.3871 L23: -0.2761 REMARK 3 S TENSOR REMARK 3 S11: -0.0739 S12: -0.6752 S13: 0.1291 REMARK 3 S21: -0.0404 S22: 0.0729 S23: -0.2000 REMARK 3 S31: 0.1547 S32: 0.3941 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN I AND RESID 2:110 ) OR ( CHAIN H AND RESID REMARK 3 1:110 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.171 32.003 14.246 REMARK 3 T TENSOR REMARK 3 T11: 0.4434 T22: 0.5417 REMARK 3 T33: 0.5863 T12: 0.0194 REMARK 3 T13: 0.0141 T23: 0.1018 REMARK 3 L TENSOR REMARK 3 L11: 1.7574 L22: 1.0932 REMARK 3 L33: 0.9262 L12: -0.1214 REMARK 3 L13: 0.3138 L23: 0.0654 REMARK 3 S TENSOR REMARK 3 S11: 0.1108 S12: -0.3854 S13: -0.2728 REMARK 3 S21: 0.0426 S22: 0.0972 S23: 0.0266 REMARK 3 S31: -0.0933 S32: -0.0276 S33: 0.0154 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN I AND RESID 111:213 ) OR ( CHAIN H AND RESID REMARK 3 111:214 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.621 25.615 -1.779 REMARK 3 T TENSOR REMARK 3 T11: 0.5026 T22: 0.4428 REMARK 3 T33: 0.5088 T12: 0.0338 REMARK 3 T13: 0.0098 T23: 0.0771 REMARK 3 L TENSOR REMARK 3 L11: 1.5575 L22: 3.3534 REMARK 3 L33: 0.3939 L12: 1.1640 REMARK 3 L13: -0.0050 L23: 0.6418 REMARK 3 S TENSOR REMARK 3 S11: 0.0794 S12: -0.0065 S13: 0.0413 REMARK 3 S21: -0.0904 S22: -0.2088 S23: -0.0773 REMARK 3 S31: -0.0268 S32: -0.0838 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN H AND RESID 301:302 ) OR ( CHAIN I AND RESID REMARK 3 301:302 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.772 31.189 15.824 REMARK 3 T TENSOR REMARK 3 T11: 1.8870 T22: 2.4271 REMARK 3 T33: 2.4910 T12: -0.1526 REMARK 3 T13: -0.0279 T23: -0.0400 REMARK 3 L TENSOR REMARK 3 L11: 0.0514 L22: 0.0365 REMARK 3 L33: 0.0558 L12: -0.0460 REMARK 3 L13: 0.0563 L23: -0.0510 REMARK 3 S TENSOR REMARK 3 S11: 0.0915 S12: -0.3168 S13: 0.0769 REMARK 3 S21: -0.6487 S22: -0.1906 S23: 0.3362 REMARK 3 S31: 0.0971 S32: 0.0962 S33: 0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 301:307 ) OR ( CHAIN H AND RESID REMARK 3 401:458 ) OR ( CHAIN I AND RESID 401:439 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.279 32.688 5.769 REMARK 3 T TENSOR REMARK 3 T11: 0.5695 T22: 0.5558 REMARK 3 T33: 0.3897 T12: 0.0209 REMARK 3 T13: -0.0170 T23: 0.0634 REMARK 3 L TENSOR REMARK 3 L11: 0.3859 L22: 0.1250 REMARK 3 L33: -0.0066 L12: 0.4798 REMARK 3 L13: -0.0228 L23: 0.1756 REMARK 3 S TENSOR REMARK 3 S11: -0.0128 S12: -0.2560 S13: -0.0672 REMARK 3 S21: 0.0017 S22: 0.0393 S23: 0.0561 REMARK 3 S31: -0.0900 S32: 0.0478 S33: 0.0035 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7RP2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1000258721. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9999999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.28 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 92744 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 48.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.96900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4DSU, 3R1G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CACODYLATE PH 6.5, 40% 2 REMARK 280 -METHYL 2,4-PENTANEDIOL (MPD), 7% PEG 8000, 0.5% ETHYL ACETATE, REMARK 280 10 MM SPERMINE TETRAHYDROCHLORIDE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 74.95900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.39800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 74.95900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.39800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH H 424 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP H 217 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE H 100E O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N THR H 107 O1 EDO H 302 1.32 REMARK 500 C GLY H 106 O1 EDO H 302 1.37 REMARK 500 N THR H 107 C1 EDO H 302 1.43 REMARK 500 CA GLY H 106 O1 EDO H 302 1.45 REMARK 500 C GLY H 106 C1 EDO H 302 1.99 REMARK 500 OE2 GLU H 50 O HOH H 401 2.13 REMARK 500 OG SER H 96 O HOH H 401 2.18 REMARK 500 OE1 GLN H 77 O HOH H 402 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO H 15 C - N - CD ANGL. DEV. = -13.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 30 -73.83 -68.58 REMARK 500 GLN A 61 82.43 -50.69 REMARK 500 ASP A 105 71.71 46.07 REMARK 500 LYS A 165 42.81 -74.70 REMARK 500 HIS A 166 -43.01 -148.44 REMARK 500 PRO H 14 -179.87 -57.24 REMARK 500 PRO H 15 -21.34 38.08 REMARK 500 LYS H 43 -169.99 -122.16 REMARK 500 SER H 98 -33.76 70.01 REMARK 500 ASP H 144 65.89 60.44 REMARK 500 ASN I 27B -84.62 -108.78 REMARK 500 ASN I 51 -46.81 74.34 REMARK 500 ASN I 52 11.22 -149.19 REMARK 500 SER I 76 -74.29 -91.40 REMARK 500 TYR I 141 -152.82 -93.80 REMARK 500 PRO I 142 99.41 1.65 REMARK 500 ASP I 152 -111.00 55.86 REMARK 500 GLN I 168 -164.42 -77.01 REMARK 500 CYS I 212 40.30 -173.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO H 14 PRO H 15 -140.74 REMARK 500 TYR I 141 PRO I 142 -132.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 GDP A 201 O1B 89.6 REMARK 620 3 HOH A 302 O 81.3 168.1 REMARK 620 4 HOH A 303 O 89.7 88.2 84.1 REMARK 620 5 HOH A 304 O 80.2 89.8 96.1 169.8 REMARK 620 6 HOH A 305 O 167.5 94.3 96.2 102.3 87.9 REMARK 620 N 1 2 3 4 5 DBREF 7RP2 A 1 169 UNP P01116 RASK_HUMAN 1 169 DBREF 7RP2 H 1 217 PDB 7RP2 7RP2 1 217 DBREF 7RP2 I 2 213 PDB 7RP2 7RP2 2 213 SEQADV 7RP2 GLY A 0 UNP P01116 EXPRESSION TAG SEQADV 7RP2 CYS A 12 UNP P01116 GLY 12 ENGINEERED MUTATION SEQADV 7RP2 SER A 51 UNP P01116 CYS 51 ENGINEERED MUTATION SEQADV 7RP2 LEU A 80 UNP P01116 CYS 80 ENGINEERED MUTATION SEQADV 7RP2 SER A 118 UNP P01116 CYS 118 ENGINEERED MUTATION SEQRES 1 A 170 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA CYS SEQRES 2 A 170 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 A 170 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 A 170 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR SER SEQRES 5 A 170 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SEQRES 6 A 170 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 A 170 PHE LEU LEU VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 8 A 170 GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 A 170 LYS ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 A 170 LYS SER ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN SEQRES 11 A 170 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE SEQRES 12 A 170 GLU THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA SEQRES 13 A 170 PHE TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU SEQRES 14 A 170 LYS SEQRES 1 H 226 GLU VAL GLN LEU GLN GLU SER GLY PRO GLY LEU VAL LYS SEQRES 2 H 226 PRO PRO GLY THR LEU SER LEU THR CYS ALA VAL SER GLY SEQRES 3 H 226 GLY SER ILE SER SER SER ASN TRP TRP SER TRP VAL ARG SEQRES 4 H 226 GLN PRO PRO GLY LYS GLY LEU GLU TRP ILE GLY GLU ILE SEQRES 5 H 226 TYR HIS SER GLY SER THR ASN TYR ASN PRO SER LEU LYS SEQRES 6 H 226 SER ARG VAL THR ILE SER VAL ASP LYS SER LYS ASN GLN SEQRES 7 H 226 PHE SER LEU LYS LEU SER SER VAL THR ALA ALA ASP THR SEQRES 8 H 226 ALA VAL TYR TYR CYS ALA ARG GLY SER SER SER TRP TYR SEQRES 9 H 226 ASP LEU GLY PRO PHE ASP TYR TRP GLY GLN GLY THR LEU SEQRES 10 H 226 VAL THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL SEQRES 11 H 226 PHE PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY SEQRES 12 H 226 THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO SEQRES 13 H 226 GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SEQRES 14 H 226 SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER SEQRES 15 H 226 GLY LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SEQRES 16 H 226 SER SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN SEQRES 17 H 226 HIS LYS PRO SER ASN THR LYS VAL ASP LYS LYS VAL GLU SEQRES 18 H 226 PRO LYS SER CYS ASP SEQRES 1 I 215 SER VAL LEU THR GLN PRO PRO SER ALA SER GLY THR PRO SEQRES 2 I 215 GLY GLN ARG VAL THR ILE SER CYS SER GLY SER SER SER SEQRES 3 I 215 ASN ILE GLY SER ASN TYR VAL TYR TRP TYR GLN GLN LEU SEQRES 4 I 215 PRO GLY THR ALA PRO LYS LEU LEU ILE TYR ARG ASN ASN SEQRES 5 I 215 GLN ARG PRO SER GLY VAL PRO ASP ARG PHE SER GLY SER SEQRES 6 I 215 LYS SER GLY THR SER ALA SER LEU ALA ILE SER GLY LEU SEQRES 7 I 215 ARG SER GLU ASP GLU ALA ASP TYR TYR CYS ALA ALA TRP SEQRES 8 I 215 ASP GLU ARG LEU SER GLY TRP VAL PHE GLY GLY GLY THR SEQRES 9 I 215 LYS LEU THR VAL LEU GLY GLN PRO LYS ALA ALA PRO SER SEQRES 10 I 215 VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN ALA SEQRES 11 I 215 ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE TYR SEQRES 12 I 215 PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SER SEQRES 13 I 215 PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SER LYS SEQRES 14 I 215 GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SER SEQRES 15 I 215 LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER TYR SER SEQRES 16 I 215 CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS THR SEQRES 17 I 215 VAL ALA PRO THR GLU CYS SER HET GDP A 201 28 HET MG A 202 1 HET CAC H 301 5 HET EDO H 302 4 HET CAC I 301 5 HET CAC I 302 5 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM CAC CACODYLATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN CAC DIMETHYLARSINATE HETSYN EDO ETHYLENE GLYCOL FORMUL 4 GDP C10 H15 N5 O11 P2 FORMUL 5 MG MG 2+ FORMUL 6 CAC 3(C2 H6 AS O2 1-) FORMUL 7 EDO C2 H6 O2 FORMUL 10 HOH *104(H2 O) HELIX 1 AA1 GLY A 15 ASN A 26 1 12 HELIX 2 AA2 SER A 65 THR A 74 1 10 HELIX 3 AA3 ASN A 86 ASP A 92 1 7 HELIX 4 AA4 ASP A 92 ASP A 105 1 14 HELIX 5 AA5 ASP A 126 GLY A 138 1 13 HELIX 6 AA6 GLY A 151 GLU A 168 1 18 HELIX 7 AA7 PRO H 61 LYS H 64 5 4 HELIX 8 AA8 THR H 83 THR H 87 5 5 HELIX 9 AA9 SER H 156 ALA H 158 5 3 HELIX 10 AB1 SER H 187 LEU H 189 5 3 HELIX 11 AB2 LYS H 201 ASN H 204 5 4 HELIX 12 AB3 ARG I 79 GLU I 83 5 5 HELIX 13 AB4 SER I 122 ALA I 128 1 7 HELIX 14 AB5 THR I 182 HIS I 189 1 8 SHEET 1 AA1 6 ASP A 38 ILE A 46 0 SHEET 2 AA1 6 GLU A 49 ASP A 57 -1 O SER A 51 N VAL A 44 SHEET 3 AA1 6 THR A 2 GLY A 10 1 N LEU A 6 O ASP A 54 SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O LEU A 79 N VAL A 7 SHEET 5 AA1 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82 SHEET 6 AA1 6 PHE A 141 GLU A 143 1 O ILE A 142 N GLY A 115 SHEET 1 AA2 4 GLN H 3 SER H 7 0 SHEET 2 AA2 4 LEU H 18 SER H 25 -1 O SER H 25 N GLN H 3 SHEET 3 AA2 4 GLN H 77 LEU H 82 -1 O LEU H 82 N LEU H 18 SHEET 4 AA2 4 VAL H 67 ASP H 72 -1 N ASP H 72 O GLN H 77 SHEET 1 AA3 2 LEU H 11 VAL H 12 0 SHEET 2 AA3 2 THR H 110 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 1 AA4 5 THR H 57 TYR H 59 0 SHEET 2 AA4 5 GLU H 46 ILE H 51 -1 N GLU H 50 O ASN H 58 SHEET 3 AA4 5 TRP H 34 GLN H 39 -1 N TRP H 35 O ILE H 51 SHEET 4 AA4 5 VAL H 89 GLY H 95 -1 O TYR H 91 N VAL H 37 SHEET 5 AA4 5 TYR H 102 TRP H 103 -1 O TYR H 102 N ARG H 94 SHEET 1 AA5 4 SER H 120 LEU H 124 0 SHEET 2 AA5 4 THR H 135 TYR H 145 -1 O GLY H 139 N LEU H 124 SHEET 3 AA5 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA5 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AA6 4 THR H 131 SER H 132 0 SHEET 2 AA6 4 THR H 135 TYR H 145 -1 O THR H 135 N SER H 132 SHEET 3 AA6 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA6 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AA7 3 THR H 151 TRP H 154 0 SHEET 2 AA7 3 ILE H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AA7 3 THR H 205 LYS H 210 -1 O VAL H 207 N VAL H 198 SHEET 1 AA8 5 SER I 9 GLY I 13 0 SHEET 2 AA8 5 THR I 102 VAL I 106 1 O THR I 105 N ALA I 11 SHEET 3 AA8 5 ALA I 84 ASP I 92 -1 N ALA I 84 O LEU I 104 SHEET 4 AA8 5 VAL I 33 GLN I 38 -1 N GLN I 38 O ASP I 85 SHEET 5 AA8 5 LYS I 45 ILE I 48 -1 O LEU I 47 N TRP I 35 SHEET 1 AA9 4 SER I 9 GLY I 13 0 SHEET 2 AA9 4 THR I 102 VAL I 106 1 O THR I 105 N ALA I 11 SHEET 3 AA9 4 ALA I 84 ASP I 92 -1 N ALA I 84 O LEU I 104 SHEET 4 AA9 4 GLY I 95B PHE I 98 -1 O VAL I 97 N ALA I 90 SHEET 1 AB1 3 VAL I 19 SER I 24 0 SHEET 2 AB1 3 SER I 70 ILE I 75 -1 O LEU I 73 N ILE I 21 SHEET 3 AB1 3 PHE I 62 SER I 67 -1 N SER I 63 O ALA I 74 SHEET 1 AB2 4 SER I 115 PHE I 119 0 SHEET 2 AB2 4 ALA I 131 PHE I 140 -1 O LEU I 136 N THR I 117 SHEET 3 AB2 4 TYR I 173 LEU I 181 -1 O ALA I 175 N ILE I 137 SHEET 4 AB2 4 VAL I 160 THR I 162 -1 N GLU I 161 O TYR I 178 SHEET 1 AB3 4 SER I 115 PHE I 119 0 SHEET 2 AB3 4 ALA I 131 PHE I 140 -1 O LEU I 136 N THR I 117 SHEET 3 AB3 4 TYR I 173 LEU I 181 -1 O ALA I 175 N ILE I 137 SHEET 4 AB3 4 SER I 166 LYS I 167 -1 N SER I 166 O ALA I 174 SHEET 1 AB4 4 SER I 154 VAL I 156 0 SHEET 2 AB4 4 THR I 146 ALA I 151 -1 N ALA I 151 O SER I 154 SHEET 3 AB4 4 TYR I 192 HIS I 198 -1 O GLN I 195 N ALA I 148 SHEET 4 AB4 4 SER I 201 VAL I 207 -1 O SER I 201 N HIS I 198 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.13 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.04 SSBOND 3 CYS H 216 CYS I 212 1555 1555 2.05 SSBOND 4 CYS I 23 CYS I 88 1555 1555 2.07 SSBOND 5 CYS I 135 CYS I 194 1555 1555 2.05 LINK OG SER A 17 MG MG A 202 1555 1555 2.10 LINK O1B GDP A 201 MG MG A 202 1555 1555 2.09 LINK MG MG A 202 O HOH A 302 1555 1555 2.07 LINK MG MG A 202 O HOH A 303 1555 1555 2.07 LINK MG MG A 202 O HOH A 304 1555 1555 2.08 LINK MG MG A 202 O HOH A 305 1555 1555 2.07 CISPEP 1 PHE H 146 PRO H 147 0 -5.11 CISPEP 2 GLU H 148 PRO H 149 0 -0.18 CRYST1 149.918 68.796 101.002 90.00 114.08 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006670 0.000000 0.002981 0.00000 SCALE2 0.000000 0.014536 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010845 0.00000