HEADER HYDROLASE/IMMUNE SYSTEM 03-AUG-21 7RP3 TITLE CRYSTAL STRUCTURE OF GNE-1952 ALKYLATED KRAS G12C IN COMPLEX WITH 2H11 TITLE 2 CLAMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOFORM 2B OF GTPASE KRAS; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: K-RAS 2,KI-RAS,C-K-RAS,C-KI-RAS; COMPND 5 EC: 3.6.5.2; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: IMMUNOGLOBULIN IGG HEAVY CHAIN; COMPND 10 CHAIN: H; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: IMMUNOGLOBULIN IGG LIGHT CHAIN; COMPND 14 CHAIN: I; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KRAS, KRAS2, RASK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 MOL_ID: 3; SOURCE 15 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 16 ORGANISM_COMMON: HUMAN; SOURCE 17 ORGANISM_TAXID: 9606; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GTPASE, INHIBITOR, CONFORMATION-SPECIFIC ANTIBODY, HYDROLASE-IMMUNE KEYWDS 2 SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.OH,C.TAM,W.WANG REVDAT 3 18-OCT-23 7RP3 1 REMARK REVDAT 2 01-JUN-22 7RP3 1 JRNL REVDAT 1 16-MAR-22 7RP3 0 JRNL AUTH C.W.DAVIES,A.J.OH,R.MROUE,M.STEFFEK,J.M.BRUNING,Y.XIAO, JRNL AUTH 2 S.FENG,S.JAYAKAR,E.CHAN,V.ARUMUGAM,S.C.URIBE,J.DRUMMOND, JRNL AUTH 3 A.FROMMLET,C.LU,Y.FRANKE,M.MERCHANT,H.KOEPPEN,J.G.QUINN, JRNL AUTH 4 S.MALHOTRA,S.DO,L.GAZZARD,H.E.PURKEY,J.RUDOLPH, JRNL AUTH 5 M.M.MULVIHILL,J.T.KOERBER,W.WANG,M.EVANGELISTA JRNL TITL CONFORMATION-LOCKING ANTIBODIES FOR THE DISCOVERY AND JRNL TITL 2 CHARACTERIZATION OF KRAS INHIBITORS. JRNL REF NAT.BIOTECHNOL. V. 40 769 2022 JRNL REFN ISSN 1087-0156 JRNL PMID 34992247 JRNL DOI 10.1038/S41587-021-01126-9 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12-2829_FINAL REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.860 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 83629 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 4015 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.5770 - 6.1327 0.96 2729 150 0.1747 0.2041 REMARK 3 2 6.1327 - 4.8724 0.97 2751 151 0.1547 0.1903 REMARK 3 3 4.8724 - 4.2579 0.99 2825 137 0.1331 0.1587 REMARK 3 4 4.2579 - 3.8692 0.99 2804 154 0.1458 0.1978 REMARK 3 5 3.8692 - 3.5922 0.99 2838 150 0.1666 0.1832 REMARK 3 6 3.5922 - 3.3807 0.91 2596 129 0.1866 0.2528 REMARK 3 7 3.3807 - 3.2115 0.92 2644 123 0.1998 0.3117 REMARK 3 8 3.2115 - 3.0718 0.95 2654 157 0.2062 0.2541 REMARK 3 9 3.0718 - 2.9536 0.97 2749 127 0.2053 0.2342 REMARK 3 10 2.9536 - 2.8517 0.98 2829 136 0.2034 0.2339 REMARK 3 11 2.8517 - 2.7626 0.99 2807 125 0.2063 0.2422 REMARK 3 12 2.7626 - 2.6837 0.98 2756 164 0.2068 0.2553 REMARK 3 13 2.6837 - 2.6131 0.99 2840 162 0.2206 0.2845 REMARK 3 14 2.6131 - 2.5493 0.99 2824 125 0.2124 0.2631 REMARK 3 15 2.5493 - 2.4914 0.98 2748 140 0.2116 0.3057 REMARK 3 16 2.4914 - 2.4384 0.99 2779 177 0.2110 0.2389 REMARK 3 17 2.4384 - 2.3896 0.95 2737 119 0.2247 0.3071 REMARK 3 18 2.3896 - 2.3445 0.88 2529 135 0.2346 0.2888 REMARK 3 19 2.3445 - 2.3027 0.92 2608 110 0.2403 0.2843 REMARK 3 20 2.3027 - 2.2637 0.94 2654 144 0.2248 0.2925 REMARK 3 21 2.2637 - 2.2272 0.96 2775 119 0.2379 0.2722 REMARK 3 22 2.2272 - 2.1929 0.96 2696 139 0.2414 0.3128 REMARK 3 23 2.1929 - 2.1607 0.97 2778 139 0.2463 0.2593 REMARK 3 24 2.1607 - 2.1302 0.96 2766 128 0.2407 0.3012 REMARK 3 25 2.1302 - 2.1014 0.97 2703 174 0.2576 0.3272 REMARK 3 26 2.1014 - 2.0742 0.97 2799 125 0.2638 0.2921 REMARK 3 27 2.0742 - 2.0482 0.98 2808 115 0.2818 0.2852 REMARK 3 28 2.0482 - 2.0236 0.98 2777 133 0.2800 0.3115 REMARK 3 29 2.0236 - 2.0000 0.98 2811 128 0.3020 0.3449 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.220 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4726 REMARK 3 ANGLE : 0.952 6425 REMARK 3 CHIRALITY : 0.053 712 REMARK 3 PLANARITY : 0.010 811 REMARK 3 DIHEDRAL : 17.037 2786 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND ( RESID 1:167 OR RESID 307:325 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.631 18.820 -12.677 REMARK 3 T TENSOR REMARK 3 T11: 0.3839 T22: 0.2838 REMARK 3 T33: 0.3711 T12: 0.0149 REMARK 3 T13: 0.0247 T23: 0.0165 REMARK 3 L TENSOR REMARK 3 L11: 2.4101 L22: 3.1074 REMARK 3 L33: 2.6578 L12: -1.1670 REMARK 3 L13: -0.7228 L23: 1.1987 REMARK 3 S TENSOR REMARK 3 S11: 0.0703 S12: 0.0051 S13: 0.3889 REMARK 3 S21: -0.2431 S22: 0.1108 S23: -0.1178 REMARK 3 S31: -0.4855 S32: 0.0074 S33: 0.0011 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN I AND RESID 2:110 ) OR ( CHAIN H AND RESID REMARK 3 1:110 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.717 -11.690 -17.119 REMARK 3 T TENSOR REMARK 3 T11: 0.2629 T22: 0.3246 REMARK 3 T33: 0.2699 T12: 0.0509 REMARK 3 T13: -0.0122 T23: 0.0279 REMARK 3 L TENSOR REMARK 3 L11: 1.3955 L22: 1.6635 REMARK 3 L33: 1.1666 L12: -0.4534 REMARK 3 L13: -0.3408 L23: 0.3280 REMARK 3 S TENSOR REMARK 3 S11: -0.0092 S12: -0.0657 S13: 0.0410 REMARK 3 S21: 0.0761 S22: 0.0366 S23: -0.2039 REMARK 3 S31: 0.1259 S32: 0.0797 S33: 0.0007 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN I AND RESID 111:210 ) OR ( CHAIN H AND RESID REMARK 3 111:213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.220 -34.639 -29.156 REMARK 3 T TENSOR REMARK 3 T11: 0.7024 T22: 0.6131 REMARK 3 T33: 0.5369 T12: 0.3248 REMARK 3 T13: 0.1383 T23: 0.1511 REMARK 3 L TENSOR REMARK 3 L11: 3.0247 L22: 1.2089 REMARK 3 L33: 1.6360 L12: -1.3058 REMARK 3 L13: 1.6681 L23: -0.7936 REMARK 3 S TENSOR REMARK 3 S11: 0.4647 S12: 0.5084 S13: -0.1308 REMARK 3 S21: -0.6254 S22: -0.5047 S23: -0.2731 REMARK 3 S31: 1.0050 S32: 0.4982 S33: 0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN H AND RESID 401:494 ) OR ( CHAIN I AND RESID REMARK 3 401:524 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.913 -9.600 -19.030 REMARK 3 T TENSOR REMARK 3 T11: 0.3614 T22: 0.3843 REMARK 3 T33: 0.3657 T12: 0.0348 REMARK 3 T13: -0.0049 T23: 0.0158 REMARK 3 L TENSOR REMARK 3 L11: 0.5357 L22: 0.7335 REMARK 3 L33: 0.2536 L12: -0.2347 REMARK 3 L13: -0.2283 L23: -0.0503 REMARK 3 S TENSOR REMARK 3 S11: 0.0173 S12: -0.0063 S13: 0.0157 REMARK 3 S21: -0.0735 S22: -0.0173 S23: -0.1373 REMARK 3 S31: -0.0084 S32: 0.0421 S33: 0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 204:206 ) OR ( CHAIN H AND RESID REMARK 3 302:302 ) OR ( CHAIN I AND RESID 301:303 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.524 -4.595 -27.550 REMARK 3 T TENSOR REMARK 3 T11: 0.7623 T22: 0.6439 REMARK 3 T33: 0.6542 T12: -0.0486 REMARK 3 T13: -0.0297 T23: 0.0269 REMARK 3 L TENSOR REMARK 3 L11: 0.0406 L22: 0.0174 REMARK 3 L33: 0.1135 L12: -0.0023 REMARK 3 L13: -0.1482 L23: -0.0217 REMARK 3 S TENSOR REMARK 3 S11: -0.0922 S12: 0.2128 S13: -0.2525 REMARK 3 S21: -0.2629 S22: 0.0414 S23: 0.2202 REMARK 3 S31: -0.1451 S32: -0.1130 S33: 0.0004 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7RP3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1000258722. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 83629 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 45.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.42600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4DSU, 3R1G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.10% N-OCTYL-B-D-GLUCOSIDE, 0.1 M REMARK 280 SODIUM CITRATE PH 5.5, 22% PEG 3350, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 37.16500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 GLU A 168 REMARK 465 LYS A 169 REMARK 465 SER H 128 REMARK 465 LYS H 129 REMARK 465 SER H 130 REMARK 465 THR H 131 REMARK 465 SER H 132 REMARK 465 GLY H 133 REMARK 465 SER H 187 REMARK 465 SER H 188 REMARK 465 LEU H 189 REMARK 465 LYS H 214 REMARK 465 SER H 215 REMARK 465 CYS H 216 REMARK 465 ASP H 217 REMARK 465 GLU I 211 REMARK 465 CYS I 212 REMARK 465 SER I 213 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH H 401 O HOH H 485 1.99 REMARK 500 OG SER H 203 OG1 THR H 205 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO H 15 C - N - CD ANGL. DEV. = -17.4 DEGREES REMARK 500 LEU I 136 CA - CB - CG ANGL. DEV. = -14.5 DEGREES REMARK 500 PRO I 142 C - N - CD ANGL. DEV. = -22.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 59 -160.16 -161.72 REMARK 500 PRO H 14 -178.84 -51.70 REMARK 500 PRO H 15 -41.97 44.65 REMARK 500 LYS H 43 -169.60 -116.76 REMARK 500 ALA H 158 -20.54 -140.63 REMARK 500 GLN H 192 -115.89 -155.70 REMARK 500 LYS H 206 114.52 -170.16 REMARK 500 ASN I 27B -90.56 -116.05 REMARK 500 ASN I 51 -48.74 76.27 REMARK 500 ASN I 52 15.62 -149.47 REMARK 500 PRO I 142 119.57 25.61 REMARK 500 ASP I 152 -83.47 58.71 REMARK 500 ASN I 171 -0.18 71.74 REMARK 500 PRO I 209 90.85 -62.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO H 14 PRO H 15 -125.70 REMARK 500 TYR I 141 PRO I 142 -97.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 GDP A 202 O3B 89.4 REMARK 620 3 HOH A 307 O 82.2 101.2 REMARK 620 4 HOH A 318 O 88.8 78.8 171.0 REMARK 620 5 HOH A 321 O 174.7 85.6 96.9 92.1 REMARK 620 6 HOH A 325 O 91.2 163.7 95.0 84.9 94.1 REMARK 620 N 1 2 3 4 5 DBREF 7RP3 A 2 169 UNP P01116-2 RASK-2_HUMAN 2 169 DBREF 7RP3 H 1 217 PDB 7RP3 7RP3 1 217 DBREF 7RP3 I 2 213 PDB 7RP3 7RP3 2 213 SEQADV 7RP3 GLY A -1 UNP P01116-2 EXPRESSION TAG SEQADV 7RP3 SER A 0 UNP P01116-2 EXPRESSION TAG SEQADV 7RP3 SER A 1 UNP P01116-2 EXPRESSION TAG SEQADV 7RP3 CYS A 12 UNP P01116-2 GLY 12 ENGINEERED MUTATION SEQRES 1 A 171 GLY SER SER THR GLU TYR LYS LEU VAL VAL VAL GLY ALA SEQRES 2 A 171 CYS GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE SEQRES 3 A 171 GLN ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU SEQRES 4 A 171 ASP SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR SEQRES 5 A 171 CYS LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU SEQRES 6 A 171 TYR SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU SEQRES 7 A 171 GLY PHE LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER SEQRES 8 A 171 PHE GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG SEQRES 9 A 171 VAL LYS ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY SEQRES 10 A 171 ASN LYS CYS ASP LEU PRO SER ARG THR VAL ASP THR LYS SEQRES 11 A 171 GLN ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE SEQRES 12 A 171 ILE GLU THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP SEQRES 13 A 171 ALA PHE TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS SEQRES 14 A 171 GLU LYS SEQRES 1 H 226 GLU VAL GLN LEU GLN GLU SER GLY PRO GLY LEU VAL LYS SEQRES 2 H 226 PRO PRO GLY THR LEU SER LEU THR CYS ALA VAL SER GLY SEQRES 3 H 226 GLY SER ILE SER SER SER ASN TRP TRP SER TRP VAL ARG SEQRES 4 H 226 GLN PRO PRO GLY LYS GLY LEU GLU TRP ILE GLY GLU ILE SEQRES 5 H 226 TYR HIS SER GLY SER THR ASN TYR ASN PRO SER LEU LYS SEQRES 6 H 226 SER ARG VAL THR ILE SER VAL ASP LYS SER LYS ASN GLN SEQRES 7 H 226 PHE SER LEU LYS LEU SER SER VAL THR ALA ALA ASP THR SEQRES 8 H 226 ALA VAL TYR TYR CYS ALA ARG GLY SER SER SER TRP TYR SEQRES 9 H 226 ASP LEU GLY PRO PHE ASP TYR TRP GLY GLN GLY THR LEU SEQRES 10 H 226 VAL THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL SEQRES 11 H 226 PHE PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY SEQRES 12 H 226 THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO SEQRES 13 H 226 GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SEQRES 14 H 226 SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER SEQRES 15 H 226 GLY LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SEQRES 16 H 226 SER SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN SEQRES 17 H 226 HIS LYS PRO SER ASN THR LYS VAL ASP LYS LYS VAL GLU SEQRES 18 H 226 PRO LYS SER CYS ASP SEQRES 1 I 215 SER VAL LEU THR GLN PRO PRO SER ALA SER GLY THR PRO SEQRES 2 I 215 GLY GLN ARG VAL THR ILE SER CYS SER GLY SER SER SER SEQRES 3 I 215 ASN ILE GLY SER ASN TYR VAL TYR TRP TYR GLN GLN LEU SEQRES 4 I 215 PRO GLY THR ALA PRO LYS LEU LEU ILE TYR ARG ASN ASN SEQRES 5 I 215 GLN ARG PRO SER GLY VAL PRO ASP ARG PHE SER GLY SER SEQRES 6 I 215 LYS SER GLY THR SER ALA SER LEU ALA ILE SER GLY LEU SEQRES 7 I 215 ARG SER GLU ASP GLU ALA ASP TYR TYR CYS ALA ALA TRP SEQRES 8 I 215 ASP GLU ARG LEU SER GLY TRP VAL PHE GLY GLY GLY THR SEQRES 9 I 215 LYS LEU THR VAL LEU GLY GLN PRO LYS ALA ALA PRO SER SEQRES 10 I 215 VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN ALA SEQRES 11 I 215 ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE TYR SEQRES 12 I 215 PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SER SEQRES 13 I 215 PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SER LYS SEQRES 14 I 215 GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SER SEQRES 15 I 215 LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER TYR SER SEQRES 16 I 215 CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS THR SEQRES 17 I 215 VAL ALA PRO THR GLU CYS SER HET MKZ A 201 31 HET GDP A 202 28 HET MG A 203 1 HET GOL A 204 6 HET GOL A 205 6 HET GOL A 206 6 HET EDO H 301 4 HET EDO H 302 4 HET SO4 I 301 5 HET EDO I 302 4 HET GOL I 303 6 HETNAM MKZ 1-[4-[6-CHLORANYL-7-(5-METHYL-1~{H}-INDAZOL-4-YL) HETNAM 2 MKZ QUINAZOLIN-4-YL]PIPERAZIN-1-YL]PROPAN-1-ONE HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 4 MKZ C23 H23 CL N6 O FORMUL 5 GDP C10 H15 N5 O11 P2 FORMUL 6 MG MG 2+ FORMUL 7 GOL 4(C3 H8 O3) FORMUL 10 EDO 3(C2 H6 O2) FORMUL 12 SO4 O4 S 2- FORMUL 15 HOH *290(H2 O) HELIX 1 AA1 GLY A 15 ASN A 26 1 12 HELIX 2 AA2 SER A 65 THR A 74 1 10 HELIX 3 AA3 ASN A 86 ASP A 92 1 7 HELIX 4 AA4 ASP A 92 ASP A 105 1 14 HELIX 5 AA5 ASP A 126 GLY A 138 1 13 HELIX 6 AA6 GLY A 151 LYS A 167 1 17 HELIX 7 AA7 LEU H 63 SER H 65 5 3 HELIX 8 AA8 THR H 83 THR H 87 5 5 HELIX 9 AA9 LYS H 201 ASN H 204 5 4 HELIX 10 AB1 ARG I 79 GLU I 83 5 5 HELIX 11 AB2 SER I 122 ALA I 128 1 7 HELIX 12 AB3 THR I 182 HIS I 189 1 8 SHEET 1 AA1 6 ASP A 38 ILE A 46 0 SHEET 2 AA1 6 GLU A 49 ASP A 57 -1 O CYS A 51 N VAL A 44 SHEET 3 AA1 6 THR A 2 GLY A 10 1 N LEU A 6 O ASP A 54 SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O LEU A 79 N VAL A 9 SHEET 5 AA1 6 MET A 111 ASN A 116 1 O VAL A 114 N CYS A 80 SHEET 6 AA1 6 PHE A 141 GLU A 143 1 O ILE A 142 N LEU A 113 SHEET 1 AA2 4 GLN H 3 SER H 7 0 SHEET 2 AA2 4 LEU H 18 SER H 25 -1 O SER H 25 N GLN H 3 SHEET 3 AA2 4 GLN H 77 LEU H 82 -1 O PHE H 78 N CYS H 22 SHEET 4 AA2 4 VAL H 67 ASP H 72 -1 N ASP H 72 O GLN H 77 SHEET 1 AA3 6 LEU H 11 VAL H 12 0 SHEET 2 AA3 6 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA3 6 ALA H 88 GLY H 95 -1 N TYR H 90 O THR H 107 SHEET 4 AA3 6 TRP H 34 GLN H 39 -1 N VAL H 37 O TYR H 91 SHEET 5 AA3 6 GLU H 46 ILE H 51 -1 O ILE H 51 N TRP H 35 SHEET 6 AA3 6 THR H 57 TYR H 59 -1 O ASN H 58 N GLU H 50 SHEET 1 AA4 4 LEU H 11 VAL H 12 0 SHEET 2 AA4 4 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA4 4 ALA H 88 GLY H 95 -1 N TYR H 90 O THR H 107 SHEET 4 AA4 4 TYR H 102 TRP H 103 -1 O TYR H 102 N ARG H 94 SHEET 1 AA5 4 SER H 120 LEU H 124 0 SHEET 2 AA5 4 THR H 135 TYR H 145 -1 O LYS H 143 N SER H 120 SHEET 3 AA5 4 TYR H 176 PRO H 185 -1 O VAL H 184 N ALA H 136 SHEET 4 AA5 4 HIS H 164 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AA6 4 SER H 120 LEU H 124 0 SHEET 2 AA6 4 THR H 135 TYR H 145 -1 O LYS H 143 N SER H 120 SHEET 3 AA6 4 TYR H 176 PRO H 185 -1 O VAL H 184 N ALA H 136 SHEET 4 AA6 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AA7 3 THR H 151 TRP H 154 0 SHEET 2 AA7 3 TYR H 194 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AA7 3 THR H 205 VAL H 211 -1 O VAL H 207 N VAL H 198 SHEET 1 AA8 5 SER I 9 GLY I 13 0 SHEET 2 AA8 5 THR I 102 VAL I 106 1 O THR I 105 N ALA I 11 SHEET 3 AA8 5 ALA I 84 ASP I 92 -1 N ALA I 84 O LEU I 104 SHEET 4 AA8 5 TYR I 34 GLN I 38 -1 N GLN I 38 O ASP I 85 SHEET 5 AA8 5 LYS I 45 ILE I 48 -1 O LEU I 47 N TRP I 35 SHEET 1 AA9 4 SER I 9 GLY I 13 0 SHEET 2 AA9 4 THR I 102 VAL I 106 1 O THR I 105 N ALA I 11 SHEET 3 AA9 4 ALA I 84 ASP I 92 -1 N ALA I 84 O LEU I 104 SHEET 4 AA9 4 GLY I 95B PHE I 98 -1 O GLY I 95B N ASP I 92 SHEET 1 AB1 3 VAL I 19 SER I 24 0 SHEET 2 AB1 3 SER I 70 ILE I 75 -1 O ILE I 75 N VAL I 19 SHEET 3 AB1 3 PHE I 62 SER I 67 -1 N SER I 63 O ALA I 74 SHEET 1 AB2 4 SER I 115 PHE I 119 0 SHEET 2 AB2 4 ALA I 131 PHE I 140 -1 O VAL I 134 N PHE I 119 SHEET 3 AB2 4 TYR I 173 LEU I 181 -1 O TYR I 173 N PHE I 140 SHEET 4 AB2 4 VAL I 160 THR I 162 -1 N GLU I 161 O TYR I 178 SHEET 1 AB3 4 SER I 115 PHE I 119 0 SHEET 2 AB3 4 ALA I 131 PHE I 140 -1 O VAL I 134 N PHE I 119 SHEET 3 AB3 4 TYR I 173 LEU I 181 -1 O TYR I 173 N PHE I 140 SHEET 4 AB3 4 SER I 166 LYS I 167 -1 N SER I 166 O ALA I 174 SHEET 1 AB4 4 SER I 154 VAL I 156 0 SHEET 2 AB4 4 THR I 146 ALA I 151 -1 N ALA I 151 O SER I 154 SHEET 3 AB4 4 TYR I 192 HIS I 198 -1 O GLN I 195 N ALA I 148 SHEET 4 AB4 4 SER I 201 VAL I 207 -1 O SER I 201 N HIS I 198 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.15 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.06 SSBOND 3 CYS I 23 CYS I 88 1555 1555 2.05 SSBOND 4 CYS I 135 CYS I 194 1555 1555 2.02 LINK SG CYS A 12 C MKZ A 201 1555 1555 1.84 LINK OG SER A 17 MG MG A 203 1555 1555 2.11 LINK O3B GDP A 202 MG MG A 203 1555 1555 2.07 LINK MG MG A 203 O HOH A 307 1555 1555 2.07 LINK MG MG A 203 O HOH A 318 1555 1555 2.11 LINK MG MG A 203 O HOH A 321 1555 1555 2.08 LINK MG MG A 203 O HOH A 325 1555 1555 2.07 CISPEP 1 PHE H 146 PRO H 147 0 -0.40 CISPEP 2 GLU H 148 PRO H 149 0 -0.32 CRYST1 59.236 74.330 77.880 90.00 104.87 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016882 0.000000 0.004482 0.00000 SCALE2 0.000000 0.013454 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013285 0.00000