HEADER IMMUNE SYSTEM 04-AUG-21 7RPR TITLE BORRELIA MIYAMOTOI FBPA COMPLEMENT INHIBITORY DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBRONECTIN-BINDING LIPOPROTEIN FBPA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: FBPA COMPLEMENT INHIBITORY DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BORRELIA MIYAMOTOI FR64B; SOURCE 3 ORGANISM_TAXID: 1292392; SOURCE 4 GENE: BOM_1471, FBPA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PT7HMT KEYWDS COMPLEMENT EVASION, C1R, BORRELIA, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR C.E.BOOTH,B.L.GARCIA REVDAT 3 18-OCT-23 7RPR 1 REMARK REVDAT 2 29-JUN-22 7RPR 1 JRNL REVDAT 1 27-APR-22 7RPR 0 JRNL AUTH C.E.BOOTH JR.,A.D.POWELL-PIERCE,J.T.SKARE,B.L.GARCIA JRNL TITL BORRELIA MIYAMOTOI FBPA AND FBPB ARE IMMUNOMODULATORY OUTER JRNL TITL 2 SURFACE LIPOPROTEINS WITH DISTINCT STRUCTURES AND FUNCTIONS. JRNL REF FRONT IMMUNOL V. 13 86733 2022 JRNL REFN ESSN 1664-3224 JRNL PMID 35693799 JRNL DOI 10.3389/FIMMU.2022.886733 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 25840 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.740 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.7100 - 4.5800 0.96 1767 149 0.2104 0.2259 REMARK 3 2 4.5700 - 3.6300 0.99 1745 146 0.1915 0.1794 REMARK 3 3 3.6300 - 3.1700 0.99 1758 148 0.1968 0.2308 REMARK 3 4 3.1700 - 2.8800 0.94 1647 138 0.2171 0.2450 REMARK 3 5 2.8800 - 2.6800 0.97 1698 143 0.2164 0.2683 REMARK 3 6 2.6800 - 2.5200 0.98 1708 142 0.2127 0.2544 REMARK 3 7 2.5200 - 2.3900 0.99 1741 146 0.2034 0.2530 REMARK 3 8 2.3900 - 2.2900 0.99 1726 145 0.2012 0.2529 REMARK 3 9 2.2900 - 2.2000 0.99 1730 145 0.1981 0.2268 REMARK 3 10 2.2000 - 2.1200 0.98 1696 143 0.1900 0.2330 REMARK 3 11 2.1200 - 2.0600 0.93 1630 137 0.1918 0.2409 REMARK 3 12 2.0600 - 2.0000 0.96 1660 138 0.2118 0.2475 REMARK 3 13 2.0000 - 1.9500 0.97 1684 142 0.2338 0.2704 REMARK 3 14 1.9500 - 1.9000 0.95 1650 138 0.2698 0.3105 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.217 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.585 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.74 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 2532 REMARK 3 ANGLE : 1.251 3398 REMARK 3 CHIRALITY : 0.059 368 REMARK 3 PLANARITY : 0.007 430 REMARK 3 DIHEDRAL : 19.247 986 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7RPR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1000258726. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.975 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25861 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.130 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.18.2_3874 REMARK 200 STARTING MODEL: 6N1L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12.8MG/ML, 0.1M TRIS (8.5), 2M REMARK 280 AMMONIUM SULFATE, VAPOR DIFFUSION, TEMPERATURE 290.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 20.16000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 217 REMARK 465 SER A 218 REMARK 465 THR A 219 REMARK 465 GLY A 220 REMARK 465 SER A 221 REMARK 465 GLY B 217 REMARK 465 SER B 218 REMARK 465 THR B 219 REMARK 465 GLY B 220 REMARK 465 SER B 221 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 347 -154.99 -132.98 REMARK 500 SER B 348 23.73 -79.64 REMARK 500 REMARK 500 REMARK: NULL DBREF 7RPR A 222 371 UNP W5SFZ1 W5SFZ1_9SPIR 222 371 DBREF 7RPR B 222 371 UNP W5SFZ1 W5SFZ1_9SPIR 222 371 SEQADV 7RPR GLY A 217 UNP W5SFZ1 EXPRESSION TAG SEQADV 7RPR SER A 218 UNP W5SFZ1 EXPRESSION TAG SEQADV 7RPR THR A 219 UNP W5SFZ1 EXPRESSION TAG SEQADV 7RPR GLY A 220 UNP W5SFZ1 EXPRESSION TAG SEQADV 7RPR SER A 221 UNP W5SFZ1 EXPRESSION TAG SEQADV 7RPR GLY B 217 UNP W5SFZ1 EXPRESSION TAG SEQADV 7RPR SER B 218 UNP W5SFZ1 EXPRESSION TAG SEQADV 7RPR THR B 219 UNP W5SFZ1 EXPRESSION TAG SEQADV 7RPR GLY B 220 UNP W5SFZ1 EXPRESSION TAG SEQADV 7RPR SER B 221 UNP W5SFZ1 EXPRESSION TAG SEQRES 1 A 155 GLY SER THR GLY SER ASP ASN ARG TYR LYS SER TYR LEU SEQRES 2 A 155 GLU GLY VAL ARG TYR ASN VAL SER ALA ALA ILE GLY SER SEQRES 3 A 155 ILE ASP LYS ILE TYR ASN ASN TYR LYS LEU PHE GLU GLU SEQRES 4 A 155 GLN ARG THR LYS MET TYR SER THR ARG LEU ASP THR VAL SEQRES 5 A 155 THR LYS ASP GLN ALA LYS LYS GLU ALA GLU LYS PHE THR SEQRES 6 A 155 LYS GLU GLU LEU GLU LYS ASP LEU LYS GLU LEU LEU ASN SEQRES 7 A 155 TYR ILE GLN VAL SER ALA LYS THR ALA THR ASN PHE VAL SEQRES 8 A 155 TYR GLN LYS GLU GLN TYR ALA LYS GLN ARG LEU ASP LYS SEQRES 9 A 155 LEU GLU THR GLU VAL LYS THR LEU ILE SER GLU VAL GLN SEQRES 10 A 155 GLY GLN SER HIS PRO TYR GLU ALA TYR LYS ALA ILE VAL SEQRES 11 A 155 ARG SER LYS PHE LEU GLN MET LYS ASP SER LEU GLU VAL SEQRES 12 A 155 VAL LYS GLY VAL ILE ASP ARG ASP GLY PRO TRP TYR SEQRES 1 B 155 GLY SER THR GLY SER ASP ASN ARG TYR LYS SER TYR LEU SEQRES 2 B 155 GLU GLY VAL ARG TYR ASN VAL SER ALA ALA ILE GLY SER SEQRES 3 B 155 ILE ASP LYS ILE TYR ASN ASN TYR LYS LEU PHE GLU GLU SEQRES 4 B 155 GLN ARG THR LYS MET TYR SER THR ARG LEU ASP THR VAL SEQRES 5 B 155 THR LYS ASP GLN ALA LYS LYS GLU ALA GLU LYS PHE THR SEQRES 6 B 155 LYS GLU GLU LEU GLU LYS ASP LEU LYS GLU LEU LEU ASN SEQRES 7 B 155 TYR ILE GLN VAL SER ALA LYS THR ALA THR ASN PHE VAL SEQRES 8 B 155 TYR GLN LYS GLU GLN TYR ALA LYS GLN ARG LEU ASP LYS SEQRES 9 B 155 LEU GLU THR GLU VAL LYS THR LEU ILE SER GLU VAL GLN SEQRES 10 B 155 GLY GLN SER HIS PRO TYR GLU ALA TYR LYS ALA ILE VAL SEQRES 11 B 155 ARG SER LYS PHE LEU GLN MET LYS ASP SER LEU GLU VAL SEQRES 12 B 155 VAL LYS GLY VAL ILE ASP ARG ASP GLY PRO TRP TYR FORMUL 3 HOH *202(H2 O) HELIX 1 AA1 ASP A 222 TYR A 261 1 40 HELIX 2 AA2 ASP A 266 GLU A 278 1 13 HELIX 3 AA3 THR A 281 ALA A 303 1 23 HELIX 4 AA4 THR A 304 VAL A 307 5 4 HELIX 5 AA5 GLN A 312 GLN A 335 1 24 HELIX 6 AA6 HIS A 337 VAL A 346 1 10 HELIX 7 AA7 LYS A 349 ASP A 365 1 17 HELIX 8 AA8 ASN B 223 TYR B 261 1 39 HELIX 9 AA9 ASP B 266 GLU B 278 1 13 HELIX 10 AB1 THR B 281 ALA B 303 1 23 HELIX 11 AB2 THR B 304 VAL B 307 5 4 HELIX 12 AB3 GLN B 312 GLN B 335 1 24 HELIX 13 AB4 HIS B 337 SER B 348 1 12 HELIX 14 AB5 LYS B 349 LEU B 351 5 3 HELIX 15 AB6 GLN B 352 ASP B 365 1 14 CRYST1 58.428 40.320 74.086 90.00 105.41 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017115 0.000000 0.004717 0.00000 SCALE2 0.000000 0.024802 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014001 0.00000