HEADER TRANSFERASE/TRANSFERASE INHIBITOR 11-AUG-21 7RSJ TITLE STRUCTURE OF THE VPS34 KINASE DOMAIN WITH COMPOUND 14 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHATIDYLINOSITOL 3-KINASE CATALYTIC SUBUNIT TYPE 3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PI3-KINASE TYPE 3,PI3K TYPE 3,PTDINS-3-KINASE TYPE 3, COMPND 5 PHOSPHATIDYLINOSITOL 3-KINASE P100 SUBUNIT,PHOSPHOINOSITIDE-3-KINASE COMPND 6 CLASS 3,HVPS34; COMPND 7 EC: 2.7.1.137; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PIK3C3, VPS34; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: GOLD KEYWDS VPS34 INHIBITOR, ENDOSOMAL TRAFFICKING, AUTHOPHAGY, ONCOPROTEIN, KEYWDS 2 TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.X.HU,S.PATEL,H.CHEN,S.WANG,S.STABEN,Y.N.DIMITROVA,H.A.WALLWEBER, AUTHOR 2 J.Y.LEE,G.K.Y.CHAN,C.J.SNEERINGER,M.S.PRANGLEY,J.G.MOFFAT,C.WU, AUTHOR 3 L.K.SCHUTT,L.SALPHATI,J.PANG,E.MCNAMARA,H.HUANG,Y.CHEN,Y.WANG, AUTHOR 4 W.ZHAO,J.LIM,A.MURTHY,M.SIU REVDAT 3 03-APR-24 7RSJ 1 REMARK REVDAT 2 14-SEP-22 7RSJ 1 JRNL REVDAT 1 24-NOV-21 7RSJ 0 JRNL AUTH D.X.HU,S.PATEL,H.CHEN,S.WANG,S.T.STABEN,Y.N.DIMITROVA, JRNL AUTH 2 H.A.WALLWEBER,J.Y.LEE,G.K.Y.CHAN,C.J.SNEERINGER, JRNL AUTH 3 M.S.PRANGLEY,J.G.MOFFAT,K.C.WU,L.K.SCHUTT,L.SALPHATI,J.PANG, JRNL AUTH 4 E.MCNAMARA,H.HUANG,Y.CHEN,Y.WANG,W.ZHAO,J.LIM,A.MURTHY,M.SIU JRNL TITL STRUCTURE-BASED DESIGN OF POTENT, SELECTIVE, AND ORALLY JRNL TITL 2 BIOAVAILABLE VPS34 KINASE INHIBITORS. JRNL REF J.MED.CHEM. V. 65 11500 2022 JRNL REFN ISSN 0022-2623 JRNL PMID 34779204 JRNL DOI 10.1021/ACS.JMEDCHEM.1C01180 REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 77.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 59094 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.380 REMARK 3 FREE R VALUE TEST SET COUNT : 1995 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 77.0110 - 4.5323 0.98 4342 153 0.1568 0.1732 REMARK 3 2 4.5323 - 3.5974 0.99 4151 146 0.1343 0.1522 REMARK 3 3 3.5974 - 3.1427 0.99 4155 148 0.1613 0.2150 REMARK 3 4 3.1427 - 2.8553 0.99 4114 146 0.1794 0.2070 REMARK 3 5 2.8553 - 2.6506 1.00 4133 148 0.1806 0.2408 REMARK 3 6 2.6506 - 2.4944 1.00 4119 143 0.1757 0.2071 REMARK 3 7 2.4944 - 2.3694 1.00 4083 141 0.1813 0.2106 REMARK 3 8 2.3694 - 2.2663 1.00 4095 143 0.1690 0.2482 REMARK 3 9 2.2663 - 2.1790 1.00 4103 141 0.1759 0.2176 REMARK 3 10 2.1790 - 2.1038 1.00 4092 140 0.1876 0.2307 REMARK 3 11 2.1038 - 2.0380 0.99 4069 139 0.1950 0.2454 REMARK 3 12 2.0380 - 1.9798 1.00 4066 144 0.2298 0.2770 REMARK 3 13 1.9798 - 1.9277 1.00 4083 143 0.2670 0.3149 REMARK 3 14 1.9277 - 1.8810 0.86 3494 120 0.3222 0.3910 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -9.8696 -12.6399 15.8535 REMARK 3 T TENSOR REMARK 3 T11: 0.3383 T22: 0.3396 REMARK 3 T33: 0.2804 T12: 0.0032 REMARK 3 T13: -0.0061 T23: 0.0288 REMARK 3 L TENSOR REMARK 3 L11: 0.7551 L22: 0.7162 REMARK 3 L33: 0.4039 L12: 0.0054 REMARK 3 L13: -0.0418 L23: -0.0546 REMARK 3 S TENSOR REMARK 3 S11: 0.0053 S12: -0.0509 S13: -0.0104 REMARK 3 S21: -0.0059 S22: 0.0018 S23: 0.0850 REMARK 3 S31: 0.0505 S32: -0.0374 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7RSJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1000258160. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-AUG-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97910 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS BUILT=20190315 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.32 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59229 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 110.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 1.45000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: APO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M POTASSIUM/SODIUM TARTRATE 0.1M REMARK 280 BIS-TRIS PROPANE PH7.5, 20% PEG3350 0.7% V/V 1-BUTANOL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.69300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.25100 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.69300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 55.25100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1262 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 268 REMARK 465 HIS A 269 REMARK 465 HIS A 270 REMARK 465 HIS A 271 REMARK 465 HIS A 272 REMARK 465 HIS A 273 REMARK 465 GLY A 274 REMARK 465 GLU A 275 REMARK 465 ASN A 276 REMARK 465 LEU A 277 REMARK 465 TYR A 278 REMARK 465 PHE A 279 REMARK 465 GLN A 280 REMARK 465 GLY A 281 REMARK 465 SER A 282 REMARK 465 ASP A 283 REMARK 465 HIS A 284 REMARK 465 ASP A 285 REMARK 465 LEU A 286 REMARK 465 THR A 418 REMARK 465 LYS A 419 REMARK 465 LYS A 420 REMARK 465 ASP A 421 REMARK 465 SER A 422 REMARK 465 GLN A 423 REMARK 465 SER A 424 REMARK 465 SER A 425 REMARK 465 VAL A 426 REMARK 465 SER A 427 REMARK 465 GLU A 428 REMARK 465 ASN A 429 REMARK 465 VAL A 430 REMARK 465 SER A 431 REMARK 465 ASN A 432 REMARK 465 SER A 433 REMARK 465 GLY A 434 REMARK 465 ILE A 435 REMARK 465 ASN A 436 REMARK 465 SER A 437 REMARK 465 ALA A 438 REMARK 465 SER A 452 REMARK 465 VAL A 453 REMARK 465 SER A 454 REMARK 465 SER A 455 REMARK 465 PRO A 456 REMARK 465 PRO A 457 REMARK 465 PRO A 458 REMARK 465 ALA A 459 REMARK 465 SER A 460 REMARK 465 LYS A 461 REMARK 465 THR A 462 REMARK 465 LYS A 463 REMARK 465 GLU A 464 REMARK 465 VAL A 465 REMARK 465 PRO A 466 REMARK 465 ASP A 467 REMARK 465 GLY A 468 REMARK 465 GLU A 469 REMARK 465 ASN A 470 REMARK 465 LEU A 471 REMARK 465 ALA A 873 REMARK 465 VAL A 874 REMARK 465 VAL A 875 REMARK 465 GLU A 876 REMARK 465 GLN A 877 REMARK 465 ILE A 878 REMARK 465 HIS A 879 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 343 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 799 OD1 ASP A 864 2.06 REMARK 500 NH2 ARG A 385 OE1 GLN A 473 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 319 30.64 -98.29 REMARK 500 LEU A 415 -154.57 -84.40 REMARK 500 GLU A 416 56.82 -141.71 REMARK 500 ASN A 565 -168.92 -108.17 REMARK 500 GLU A 596 87.58 -154.20 REMARK 500 SER A 687 178.54 179.21 REMARK 500 ALA A 708 55.05 -143.68 REMARK 500 ASP A 761 85.43 65.77 REMARK 500 PHE A 762 52.36 -102.87 REMARK 500 LYS A 778 78.92 -101.19 REMARK 500 ASN A 827 43.10 -78.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1336 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH A1337 DISTANCE = 7.81 ANGSTROMS REMARK 525 HOH A1338 DISTANCE = 9.58 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 901 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 605 O REMARK 620 2 THR A 608 OG1 87.0 REMARK 620 N 1 DBREF 7RSJ A 282 879 UNP Q8NEB9 PK3C3_HUMAN 282 879 SEQADV 7RSJ HIS A 268 UNP Q8NEB9 EXPRESSION TAG SEQADV 7RSJ HIS A 269 UNP Q8NEB9 EXPRESSION TAG SEQADV 7RSJ HIS A 270 UNP Q8NEB9 EXPRESSION TAG SEQADV 7RSJ HIS A 271 UNP Q8NEB9 EXPRESSION TAG SEQADV 7RSJ HIS A 272 UNP Q8NEB9 EXPRESSION TAG SEQADV 7RSJ HIS A 273 UNP Q8NEB9 EXPRESSION TAG SEQADV 7RSJ GLY A 274 UNP Q8NEB9 EXPRESSION TAG SEQADV 7RSJ GLU A 275 UNP Q8NEB9 EXPRESSION TAG SEQADV 7RSJ ASN A 276 UNP Q8NEB9 EXPRESSION TAG SEQADV 7RSJ LEU A 277 UNP Q8NEB9 EXPRESSION TAG SEQADV 7RSJ TYR A 278 UNP Q8NEB9 EXPRESSION TAG SEQADV 7RSJ PHE A 279 UNP Q8NEB9 EXPRESSION TAG SEQADV 7RSJ GLN A 280 UNP Q8NEB9 EXPRESSION TAG SEQADV 7RSJ GLY A 281 UNP Q8NEB9 EXPRESSION TAG SEQRES 1 A 612 HIS HIS HIS HIS HIS HIS GLY GLU ASN LEU TYR PHE GLN SEQRES 2 A 612 GLY SER ASP HIS ASP LEU LYS PRO ASN ALA ALA THR ARG SEQRES 3 A 612 ASP GLN LEU ASN ILE ILE VAL SER TYR PRO PRO THR LYS SEQRES 4 A 612 GLN LEU THR TYR GLU GLU GLN ASP LEU VAL TRP LYS PHE SEQRES 5 A 612 ARG TYR TYR LEU THR ASN GLN GLU LYS ALA LEU THR LYS SEQRES 6 A 612 PHE LEU LYS CYS VAL ASN TRP ASP LEU PRO GLN GLU ALA SEQRES 7 A 612 LYS GLN ALA LEU GLU LEU LEU GLY LYS TRP LYS PRO MET SEQRES 8 A 612 ASP VAL GLU ASP SER LEU GLU LEU LEU SER SER HIS TYR SEQRES 9 A 612 THR ASN PRO THR VAL ARG ARG TYR ALA VAL ALA ARG LEU SEQRES 10 A 612 ARG GLN ALA ASP ASP GLU ASP LEU LEU MET TYR LEU LEU SEQRES 11 A 612 GLN LEU VAL GLN ALA LEU LYS TYR GLU ASN PHE ASP ASP SEQRES 12 A 612 ILE LYS ASN GLY LEU GLU PRO THR LYS LYS ASP SER GLN SEQRES 13 A 612 SER SER VAL SER GLU ASN VAL SER ASN SER GLY ILE ASN SEQRES 14 A 612 SER ALA GLU ILE ASP SER SER GLN ILE ILE THR SER PRO SEQRES 15 A 612 LEU PRO SER VAL SER SER PRO PRO PRO ALA SER LYS THR SEQRES 16 A 612 LYS GLU VAL PRO ASP GLY GLU ASN LEU GLU GLN ASP LEU SEQRES 17 A 612 CYS THR PHE LEU ILE SER ARG ALA CYS LYS ASN SER THR SEQRES 18 A 612 LEU ALA ASN TYR LEU TYR TRP TYR VAL ILE VAL GLU CYS SEQRES 19 A 612 GLU ASP GLN ASP THR GLN GLN ARG ASP PRO LYS THR HIS SEQRES 20 A 612 GLU MET TYR LEU ASN VAL MET ARG ARG PHE SER GLN ALA SEQRES 21 A 612 LEU LEU LYS GLY ASP LYS SER VAL ARG VAL MET ARG SER SEQRES 22 A 612 LEU LEU ALA ALA GLN GLN THR PHE VAL ASP ARG LEU VAL SEQRES 23 A 612 HIS LEU MET LYS ALA VAL GLN ARG GLU SER GLY ASN ARG SEQRES 24 A 612 LYS LYS LYS ASN GLU ARG LEU GLN ALA LEU LEU GLY ASP SEQRES 25 A 612 ASN GLU LYS MET ASN LEU SER ASP VAL GLU LEU ILE PRO SEQRES 26 A 612 LEU PRO LEU GLU PRO GLN VAL LYS ILE ARG GLY ILE ILE SEQRES 27 A 612 PRO GLU THR ALA THR LEU PHE LYS SER ALA LEU MET PRO SEQRES 28 A 612 ALA GLN LEU PHE PHE LYS THR GLU ASP GLY GLY LYS TYR SEQRES 29 A 612 PRO VAL ILE PHE LYS HIS GLY ASP ASP LEU ARG GLN ASP SEQRES 30 A 612 GLN LEU ILE LEU GLN ILE ILE SER LEU MET ASP LYS LEU SEQRES 31 A 612 LEU ARG LYS GLU ASN LEU ASP LEU LYS LEU THR PRO TYR SEQRES 32 A 612 LYS VAL LEU ALA THR SER THR LYS HIS GLY PHE MET GLN SEQRES 33 A 612 PHE ILE GLN SER VAL PRO VAL ALA GLU VAL LEU ASP THR SEQRES 34 A 612 GLU GLY SER ILE GLN ASN PHE PHE ARG LYS TYR ALA PRO SEQRES 35 A 612 SER GLU ASN GLY PRO ASN GLY ILE SER ALA GLU VAL MET SEQRES 36 A 612 ASP THR TYR VAL LYS SER CYS ALA GLY TYR CYS VAL ILE SEQRES 37 A 612 THR TYR ILE LEU GLY VAL GLY ASP ARG HIS LEU ASP ASN SEQRES 38 A 612 LEU LEU LEU THR LYS THR GLY LYS LEU PHE HIS ILE ASP SEQRES 39 A 612 PHE GLY TYR ILE LEU GLY ARG ASP PRO LYS PRO LEU PRO SEQRES 40 A 612 PRO PRO MET LYS LEU ASN LYS GLU MET VAL GLU GLY MET SEQRES 41 A 612 GLY GLY THR GLN SER GLU GLN TYR GLN GLU PHE ARG LYS SEQRES 42 A 612 GLN CYS TYR THR ALA PHE LEU HIS LEU ARG ARG TYR SER SEQRES 43 A 612 ASN LEU ILE LEU ASN LEU PHE SER LEU MET VAL ASP ALA SEQRES 44 A 612 ASN ILE PRO ASP ILE ALA LEU GLU PRO ASP LYS THR VAL SEQRES 45 A 612 LYS LYS VAL GLN ASP LYS PHE ARG LEU ASP LEU SER ASP SEQRES 46 A 612 GLU GLU ALA VAL HIS TYR MET GLN SER LEU ILE ASP GLU SEQRES 47 A 612 SER VAL HIS ALA LEU PHE ALA ALA VAL VAL GLU GLN ILE SEQRES 48 A 612 HIS HET NA A 901 1 HET NA A 902 1 HET NA A 903 1 HET 7IH A 904 25 HET EDO A 905 10 HET GOL A 906 14 HET GOL A 907 14 HETNAM NA SODIUM ION HETNAM 7IH N-{4-[(7R,8R)-4-OXO-7-(PROPAN-2-YL)-4,5,6,7- HETNAM 2 7IH TETRAHYDROPYRAZOLO[1,5-A]PYRAZIN-2-YL]PYRIDIN-2- HETNAM 3 7IH YL}CYCLOPROPANECARBOXAMIDE HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NA 3(NA 1+) FORMUL 5 7IH C18 H21 N5 O2 FORMUL 6 EDO C2 H6 O2 FORMUL 7 GOL 2(C3 H8 O3) FORMUL 9 HOH *338(H2 O) HELIX 1 AA1 ASN A 289 TYR A 302 1 14 HELIX 2 AA2 THR A 309 PHE A 319 1 11 HELIX 3 AA3 PHE A 319 THR A 324 1 6 HELIX 4 AA4 ASN A 325 LYS A 328 5 4 HELIX 5 AA5 ALA A 329 LYS A 335 1 7 HELIX 6 AA6 LEU A 341 TRP A 355 1 15 HELIX 7 AA7 ASP A 359 LEU A 364 1 6 HELIX 8 AA8 GLU A 365 SER A 368 5 4 HELIX 9 AA9 ASN A 373 ARG A 385 1 13 HELIX 10 AB1 ASP A 388 LEU A 403 1 16 HELIX 11 AB2 LYS A 404 GLU A 406 5 3 HELIX 12 AB3 ASN A 407 GLY A 414 1 8 HELIX 13 AB4 ASP A 441 ILE A 445 5 5 HELIX 14 AB5 ASP A 474 ASN A 486 1 13 HELIX 15 AB6 ASN A 486 ASP A 503 1 18 HELIX 16 AB7 ASP A 503 ASP A 510 1 8 HELIX 17 AB8 ASP A 510 LYS A 530 1 21 HELIX 18 AB9 ASP A 532 ARG A 561 1 30 HELIX 19 AC1 ASN A 565 ASP A 579 1 15 HELIX 20 AC2 ASP A 579 ASN A 584 1 6 HELIX 21 AC3 PRO A 606 ALA A 609 5 4 HELIX 22 AC4 LEU A 641 GLU A 661 1 21 HELIX 23 AC5 VAL A 690 GLY A 698 1 9 HELIX 24 AC6 SER A 699 ALA A 708 1 10 HELIX 25 AC7 GLY A 713 ILE A 717 5 5 HELIX 26 AC8 SER A 718 LEU A 739 1 22 HELIX 27 AC9 ASN A 780 MET A 787 1 8 HELIX 28 AD1 SER A 792 TYR A 812 1 21 HELIX 29 AD2 TYR A 812 LEU A 822 1 11 HELIX 30 AD3 ILE A 828 LEU A 833 1 6 HELIX 31 AD4 GLU A 834 ASP A 844 1 11 HELIX 32 AD5 LYS A 845 ARG A 847 5 3 HELIX 33 AD6 SER A 851 ALA A 872 1 22 SHEET 1 AA1 4 ILE A 591 LEU A 593 0 SHEET 2 AA1 4 GLU A 596 ILE A 604 -1 O ILE A 601 N ILE A 591 SHEET 3 AA1 4 ALA A 619 THR A 625 -1 O LYS A 624 N ARG A 602 SHEET 4 AA1 4 THR A 610 LEU A 611 -1 N THR A 610 O GLN A 620 SHEET 1 AA2 6 ILE A 591 LEU A 593 0 SHEET 2 AA2 6 GLU A 596 ILE A 604 -1 O ILE A 601 N ILE A 591 SHEET 3 AA2 6 ALA A 619 THR A 625 -1 O LYS A 624 N ARG A 602 SHEET 4 AA2 6 LYS A 630 HIS A 637 -1 O PHE A 635 N ALA A 619 SHEET 5 AA2 6 HIS A 679 GLN A 683 -1 O MET A 682 N ILE A 634 SHEET 6 AA2 6 VAL A 672 ALA A 674 -1 N LEU A 673 O PHE A 681 SHEET 1 AA3 3 VAL A 688 PRO A 689 0 SHEET 2 AA3 3 LEU A 749 LEU A 751 -1 O LEU A 751 N VAL A 688 SHEET 3 AA3 3 LEU A 757 HIS A 759 -1 O PHE A 758 N LEU A 750 LINK O ILE A 605 NA NA A 901 1555 1555 2.67 LINK OG1 THR A 608 NA NA A 901 1555 1555 2.72 CRYST1 61.302 107.386 110.502 90.00 90.00 90.00 P 2 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016313 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009312 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009050 0.00000