HEADER HYDROLASE 13-AUG-21 7RTG TITLE CRYSTAL STRUCTURE OF THE HUMAN ADENOSINE DEAMINASE 1 CAVEAT 7RTG THR B 306 HAS WRONG CHIRALITY AT ATOM CB COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENOSINE DEAMINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ADENOSINE AMINOHYDROLASE; COMPND 5 EC: 3.5.4.4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ADA, ADA1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ADENOSINE DEAMINASE, ZINC BINDING ENZYME, HOLOENZYME, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.T.MA,R.L.LIEBERMAN,J.BLAZECK,M.R.JENNINGS REVDAT 2 18-OCT-23 7RTG 1 REMARK REVDAT 1 12-JAN-22 7RTG 0 JRNL AUTH M.T.MA,M.R.JENNINGS,J.BLAZECK,R.L.LIEBERMAN JRNL TITL CATALYTICALLY ACTIVE HOLO HOMO SAPIENS ADENOSINE DEAMINASE I JRNL TITL 2 ADOPTS A CLOSED CONFORMATION. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 78 91 2022 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 34981765 JRNL DOI 10.1107/S2059798321011785 REMARK 2 REMARK 2 RESOLUTION. 2.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.17 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 56.6 REMARK 3 NUMBER OF REFLECTIONS : 17712 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.940 REMARK 3 FREE R VALUE TEST SET COUNT : 2405 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.1700 - 6.6537 0.87 1997 217 0.1837 0.2147 REMARK 3 2 6.6537 - 5.2842 0.93 2099 230 0.2105 0.2713 REMARK 3 3 5.2842 - 4.6171 0.86 1935 215 0.1624 0.2021 REMARK 3 4 4.6171 - 4.1954 0.87 1990 204 0.1533 0.2293 REMARK 3 5 4.1954 - 3.8949 0.87 1960 218 0.1650 0.2440 REMARK 3 6 3.8949 - 3.6654 0.84 1897 214 0.1893 0.2650 REMARK 3 7 3.6654 - 3.4819 0.77 1761 193 0.2019 0.2518 REMARK 3 8 3.4819 - 3.3304 0.68 1532 168 0.2452 0.3048 REMARK 3 9 3.3304 - 3.2022 0.60 1360 151 0.2651 0.3029 REMARK 3 10 3.2022 - 3.0918 0.55 1210 136 0.2825 0.3248 REMARK 3 11 3.0918 - 2.9951 0.47 1083 120 0.2944 0.3809 REMARK 3 12 2.9951 - 2.9095 0.38 853 95 0.2874 0.3392 REMARK 3 13 2.9095 - 2.8329 0.29 647 76 0.3264 0.4071 REMARK 3 14 2.8329 - 2.7638 0.24 527 61 0.3274 0.4109 REMARK 3 15 2.7638 - 2.7010 0.19 421 49 0.3351 0.4589 REMARK 3 16 2.7010 - 2.6435 0.13 296 34 0.3608 0.3627 REMARK 3 17 2.6435 - 2.5910 0.10 225 24 0.3922 0.5206 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.720 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 5 THROUGH 109 OR REMARK 3 RESID 111 THROUGH 137 OR RESID 139 REMARK 3 THROUGH 353)) REMARK 3 SELECTION : (CHAIN B AND (RESID 5 THROUGH 109 OR REMARK 3 RESID 111 THROUGH 137 OR RESID 139 REMARK 3 THROUGH 353)) REMARK 3 ATOM PAIRS NUMBER : 2094 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7RTG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1000258952. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAR-21 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17712 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.591 REMARK 200 RESOLUTION RANGE LOW (A) : 42.170 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 75.7 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : 0.12010 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.3900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 24.7 REMARK 200 DATA REDUNDANCY IN SHELL : 1.30 REMARK 200 R MERGE FOR SHELL (I) : 0.36970 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.750 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3IAR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.49 M SODIUM PHOSPHATE MONOBASIC REMARK 280 MONOHYDRATE, 0.91 M POTASSIUM PHOSPHATE DIBASIC, PH 6.9, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 512 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLN A 3 REMARK 465 THR A 4 REMARK 465 PRO A 354 REMARK 465 PRO A 355 REMARK 465 SER A 356 REMARK 465 ALA A 357 REMARK 465 SER A 358 REMARK 465 ALA A 359 REMARK 465 GLY A 360 REMARK 465 GLN A 361 REMARK 465 ASN A 362 REMARK 465 LEU A 363 REMARK 465 GLU A 364 REMARK 465 ASN A 365 REMARK 465 LEU A 366 REMARK 465 TYR A 367 REMARK 465 PHE A 368 REMARK 465 GLN A 369 REMARK 465 SER A 370 REMARK 465 GLY A 371 REMARK 465 GLY A 372 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLN B 3 REMARK 465 THR B 4 REMARK 465 ALA B 357 REMARK 465 SER B 358 REMARK 465 ALA B 359 REMARK 465 GLY B 360 REMARK 465 GLN B 361 REMARK 465 ASN B 362 REMARK 465 LEU B 363 REMARK 465 GLU B 364 REMARK 465 ASN B 365 REMARK 465 LEU B 366 REMARK 465 TYR B 367 REMARK 465 PHE B 368 REMARK 465 GLN B 369 REMARK 465 SER B 370 REMARK 465 GLY B 371 REMARK 465 GLY B 372 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 44 CD OE1 OE2 REMARK 470 GLN A 138 CD OE1 NE2 REMARK 470 GLU A 320 CD OE1 OE2 REMARK 470 GLU B 44 CD OE1 OE2 REMARK 470 GLN B 138 CD OE1 NE2 REMARK 470 GLU B 320 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD LYS B 147 NH2 ARG B 149 1.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASP A 8 OE2 GLU B 337 2655 1.97 REMARK 500 OH TYR A 67 O PRO B 354 1455 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 76 CB ARG A 76 CG -0.236 REMARK 500 VAL A 166 CB VAL A 166 CG1 -0.175 REMARK 500 GLU B 25 CG GLU B 25 CD 0.103 REMARK 500 GLU B 244 CB GLU B 244 CG 0.134 REMARK 500 LYS B 273 CE LYS B 273 NZ 0.159 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 28 CB - CG - CD2 ANGL. DEV. = 11.5 DEGREES REMARK 500 ARG A 76 CB - CG - CD ANGL. DEV. = -21.6 DEGREES REMARK 500 ARG A 76 NE - CZ - NH1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG A 76 NE - CZ - NH2 ANGL. DEV. = -5.7 DEGREES REMARK 500 LYS B 23 CG - CD - CE ANGL. DEV. = 23.2 DEGREES REMARK 500 GLU B 25 CG - CD - OE1 ANGL. DEV. = 16.3 DEGREES REMARK 500 GLU B 25 CG - CD - OE2 ANGL. DEV. = -24.4 DEGREES REMARK 500 ARG B 33 NH1 - CZ - NH2 ANGL. DEV. = 8.1 DEGREES REMARK 500 ARG B 33 NE - CZ - NH1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ARG B 33 NE - CZ - NH2 ANGL. DEV. = -16.7 DEGREES REMARK 500 GLN B 175 CB - CA - C ANGL. DEV. = -12.4 DEGREES REMARK 500 GLN B 175 N - CA - CB ANGL. DEV. = 14.6 DEGREES REMARK 500 GLU B 244 CB - CA - C ANGL. DEV. = -17.2 DEGREES REMARK 500 GLU B 244 N - CA - CB ANGL. DEV. = 15.1 DEGREES REMARK 500 GLU B 244 CA - CB - CG ANGL. DEV. = 33.4 DEGREES REMARK 500 LYS B 273 CB - CG - CD ANGL. DEV. = 17.4 DEGREES REMARK 500 LYS B 273 CG - CD - CE ANGL. DEV. = 21.1 DEGREES REMARK 500 LYS B 273 CD - CE - NZ ANGL. DEV. = -16.3 DEGREES REMARK 500 ARG B 282 CB - CA - C ANGL. DEV. = -17.6 DEGREES REMARK 500 ARG B 282 N - CA - CB ANGL. DEV. = 14.4 DEGREES REMARK 500 ARG B 282 CA - CB - CG ANGL. DEV. = 29.3 DEGREES REMARK 500 ARG B 282 CB - CG - CD ANGL. DEV. = 17.2 DEGREES REMARK 500 ARG B 282 CG - CD - NE ANGL. DEV. = -29.4 DEGREES REMARK 500 THR B 306 OG1 - CB - CG2 ANGL. DEV. = 15.5 DEGREES REMARK 500 ARG B 313 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG B 313 NE - CZ - NH2 ANGL. DEV. = -6.6 DEGREES REMARK 500 ASP B 314 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 8 36.63 -91.97 REMARK 500 LEU A 56 -151.22 -125.41 REMARK 500 GLN A 175 -106.31 -107.91 REMARK 500 ALA A 183 -167.84 -112.64 REMARK 500 ILE A 230 -62.62 -92.04 REMARK 500 LYS A 232 63.31 39.42 REMARK 500 ASP A 295 -88.61 63.31 REMARK 500 GLU A 337 -45.74 -7.88 REMARK 500 ASP B 8 35.35 -92.12 REMARK 500 SER B 21 49.76 -142.19 REMARK 500 PRO B 24 5.97 -66.79 REMARK 500 LEU B 56 -152.43 -126.49 REMARK 500 GLN B 175 -100.47 -104.15 REMARK 500 ALA B 183 -167.01 -111.77 REMARK 500 ILE B 230 -61.33 -91.80 REMARK 500 ASP B 295 -90.21 62.05 REMARK 500 PRO B 355 -168.45 -72.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG B 313 ASP B 314 -130.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 76 0.07 SIDE CHAIN REMARK 500 GLU A 167 0.07 SIDE CHAIN REMARK 500 GLU B 25 0.08 SIDE CHAIN REMARK 500 ARG B 33 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 15 NE2 REMARK 620 2 HIS A 17 NE2 96.0 REMARK 620 3 HIS A 214 NE2 80.5 101.5 REMARK 620 4 ASP A 295 OD1 88.6 93.1 162.5 REMARK 620 5 HOH A 502 O 147.9 114.5 101.7 80.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 15 NE2 REMARK 620 2 HIS B 17 NE2 99.8 REMARK 620 3 HIS B 214 NE2 87.8 108.5 REMARK 620 4 ASP B 295 OD1 81.5 88.7 161.1 REMARK 620 5 HOH B 503 O 123.1 136.7 80.9 92.0 REMARK 620 N 1 2 3 4 DBREF 7RTG A 1 363 UNP P00813 ADA_HUMAN 1 363 DBREF 7RTG B 1 363 UNP P00813 ADA_HUMAN 1 363 SEQADV 7RTG GLU A 364 UNP P00813 EXPRESSION TAG SEQADV 7RTG ASN A 365 UNP P00813 EXPRESSION TAG SEQADV 7RTG LEU A 366 UNP P00813 EXPRESSION TAG SEQADV 7RTG TYR A 367 UNP P00813 EXPRESSION TAG SEQADV 7RTG PHE A 368 UNP P00813 EXPRESSION TAG SEQADV 7RTG GLN A 369 UNP P00813 EXPRESSION TAG SEQADV 7RTG SER A 370 UNP P00813 EXPRESSION TAG SEQADV 7RTG GLY A 371 UNP P00813 EXPRESSION TAG SEQADV 7RTG GLY A 372 UNP P00813 EXPRESSION TAG SEQADV 7RTG GLU B 364 UNP P00813 EXPRESSION TAG SEQADV 7RTG ASN B 365 UNP P00813 EXPRESSION TAG SEQADV 7RTG LEU B 366 UNP P00813 EXPRESSION TAG SEQADV 7RTG TYR B 367 UNP P00813 EXPRESSION TAG SEQADV 7RTG PHE B 368 UNP P00813 EXPRESSION TAG SEQADV 7RTG GLN B 369 UNP P00813 EXPRESSION TAG SEQADV 7RTG SER B 370 UNP P00813 EXPRESSION TAG SEQADV 7RTG GLY B 371 UNP P00813 EXPRESSION TAG SEQADV 7RTG GLY B 372 UNP P00813 EXPRESSION TAG SEQRES 1 A 372 MET ALA GLN THR PRO ALA PHE ASP LYS PRO LYS VAL GLU SEQRES 2 A 372 LEU HIS VAL HIS LEU ASP GLY SER ILE LYS PRO GLU THR SEQRES 3 A 372 ILE LEU TYR TYR GLY ARG ARG ARG GLY ILE ALA LEU PRO SEQRES 4 A 372 ALA ASN THR ALA GLU GLY LEU LEU ASN VAL ILE GLY MET SEQRES 5 A 372 ASP LYS PRO LEU THR LEU PRO ASP PHE LEU ALA LYS PHE SEQRES 6 A 372 ASP TYR TYR MET PRO ALA ILE ALA GLY CYS ARG GLU ALA SEQRES 7 A 372 ILE LYS ARG ILE ALA TYR GLU PHE VAL GLU MET LYS ALA SEQRES 8 A 372 LYS GLU GLY VAL VAL TYR VAL GLU VAL ARG TYR SER PRO SEQRES 9 A 372 HIS LEU LEU ALA ASN SER LYS VAL GLU PRO ILE PRO TRP SEQRES 10 A 372 ASN GLN ALA GLU GLY ASP LEU THR PRO ASP GLU VAL VAL SEQRES 11 A 372 ALA LEU VAL GLY GLN GLY LEU GLN GLU GLY GLU ARG ASP SEQRES 12 A 372 PHE GLY VAL LYS ALA ARG SER ILE LEU CYS CYS MET ARG SEQRES 13 A 372 HIS GLN PRO ASN TRP SER PRO LYS VAL VAL GLU LEU CYS SEQRES 14 A 372 LYS LYS TYR GLN GLN GLN THR VAL VAL ALA ILE ASP LEU SEQRES 15 A 372 ALA GLY ASP GLU THR ILE PRO GLY SER SER LEU LEU PRO SEQRES 16 A 372 GLY HIS VAL GLN ALA TYR GLN GLU ALA VAL LYS SER GLY SEQRES 17 A 372 ILE HIS ARG THR VAL HIS ALA GLY GLU VAL GLY SER ALA SEQRES 18 A 372 GLU VAL VAL LYS GLU ALA VAL ASP ILE LEU LYS THR GLU SEQRES 19 A 372 ARG LEU GLY HIS GLY TYR HIS THR LEU GLU ASP GLN ALA SEQRES 20 A 372 LEU TYR ASN ARG LEU ARG GLN GLU ASN MET HIS PHE GLU SEQRES 21 A 372 ILE CYS PRO TRP SER SER TYR LEU THR GLY ALA TRP LYS SEQRES 22 A 372 PRO ASP THR GLU HIS ALA VAL ILE ARG LEU LYS ASN ASP SEQRES 23 A 372 GLN ALA ASN TYR SER LEU ASN THR ASP ASP PRO LEU ILE SEQRES 24 A 372 PHE LYS SER THR LEU ASP THR ASP TYR GLN MET THR LYS SEQRES 25 A 372 ARG ASP MET GLY PHE THR GLU GLU GLU PHE LYS ARG LEU SEQRES 26 A 372 ASN ILE ASN ALA ALA LYS SER SER PHE LEU PRO GLU ASP SEQRES 27 A 372 GLU LYS ARG GLU LEU LEU ASP LEU LEU TYR LYS ALA TYR SEQRES 28 A 372 GLY MET PRO PRO SER ALA SER ALA GLY GLN ASN LEU GLU SEQRES 29 A 372 ASN LEU TYR PHE GLN SER GLY GLY SEQRES 1 B 372 MET ALA GLN THR PRO ALA PHE ASP LYS PRO LYS VAL GLU SEQRES 2 B 372 LEU HIS VAL HIS LEU ASP GLY SER ILE LYS PRO GLU THR SEQRES 3 B 372 ILE LEU TYR TYR GLY ARG ARG ARG GLY ILE ALA LEU PRO SEQRES 4 B 372 ALA ASN THR ALA GLU GLY LEU LEU ASN VAL ILE GLY MET SEQRES 5 B 372 ASP LYS PRO LEU THR LEU PRO ASP PHE LEU ALA LYS PHE SEQRES 6 B 372 ASP TYR TYR MET PRO ALA ILE ALA GLY CYS ARG GLU ALA SEQRES 7 B 372 ILE LYS ARG ILE ALA TYR GLU PHE VAL GLU MET LYS ALA SEQRES 8 B 372 LYS GLU GLY VAL VAL TYR VAL GLU VAL ARG TYR SER PRO SEQRES 9 B 372 HIS LEU LEU ALA ASN SER LYS VAL GLU PRO ILE PRO TRP SEQRES 10 B 372 ASN GLN ALA GLU GLY ASP LEU THR PRO ASP GLU VAL VAL SEQRES 11 B 372 ALA LEU VAL GLY GLN GLY LEU GLN GLU GLY GLU ARG ASP SEQRES 12 B 372 PHE GLY VAL LYS ALA ARG SER ILE LEU CYS CYS MET ARG SEQRES 13 B 372 HIS GLN PRO ASN TRP SER PRO LYS VAL VAL GLU LEU CYS SEQRES 14 B 372 LYS LYS TYR GLN GLN GLN THR VAL VAL ALA ILE ASP LEU SEQRES 15 B 372 ALA GLY ASP GLU THR ILE PRO GLY SER SER LEU LEU PRO SEQRES 16 B 372 GLY HIS VAL GLN ALA TYR GLN GLU ALA VAL LYS SER GLY SEQRES 17 B 372 ILE HIS ARG THR VAL HIS ALA GLY GLU VAL GLY SER ALA SEQRES 18 B 372 GLU VAL VAL LYS GLU ALA VAL ASP ILE LEU LYS THR GLU SEQRES 19 B 372 ARG LEU GLY HIS GLY TYR HIS THR LEU GLU ASP GLN ALA SEQRES 20 B 372 LEU TYR ASN ARG LEU ARG GLN GLU ASN MET HIS PHE GLU SEQRES 21 B 372 ILE CYS PRO TRP SER SER TYR LEU THR GLY ALA TRP LYS SEQRES 22 B 372 PRO ASP THR GLU HIS ALA VAL ILE ARG LEU LYS ASN ASP SEQRES 23 B 372 GLN ALA ASN TYR SER LEU ASN THR ASP ASP PRO LEU ILE SEQRES 24 B 372 PHE LYS SER THR LEU ASP THR ASP TYR GLN MET THR LYS SEQRES 25 B 372 ARG ASP MET GLY PHE THR GLU GLU GLU PHE LYS ARG LEU SEQRES 26 B 372 ASN ILE ASN ALA ALA LYS SER SER PHE LEU PRO GLU ASP SEQRES 27 B 372 GLU LYS ARG GLU LEU LEU ASP LEU LEU TYR LYS ALA TYR SEQRES 28 B 372 GLY MET PRO PRO SER ALA SER ALA GLY GLN ASN LEU GLU SEQRES 29 B 372 ASN LEU TYR PHE GLN SER GLY GLY HET ZN A 401 1 HET ZN B 401 1 HETNAM ZN ZINC ION FORMUL 3 ZN 2(ZN 2+) FORMUL 5 HOH *24(H2 O) HELIX 1 AA1 LYS A 23 ARG A 34 1 12 HELIX 2 AA2 THR A 42 GLY A 51 1 10 HELIX 3 AA3 THR A 57 LYS A 64 1 8 HELIX 4 AA4 LYS A 64 ALA A 73 1 10 HELIX 5 AA5 CYS A 75 GLU A 93 1 19 HELIX 6 AA6 SER A 103 ALA A 108 1 6 HELIX 7 AA7 ILE A 115 GLN A 119 5 5 HELIX 8 AA8 THR A 125 GLY A 145 1 21 HELIX 9 AA9 TRP A 161 TYR A 172 1 12 HELIX 10 AB1 GLY A 190 LEU A 193 5 4 HELIX 11 AB2 LEU A 194 SER A 207 1 14 HELIX 12 AB3 SER A 220 ILE A 230 1 11 HELIX 13 AB4 GLY A 239 GLU A 244 5 6 HELIX 14 AB5 ASP A 245 GLU A 255 1 11 HELIX 15 AB6 CYS A 262 THR A 269 1 8 HELIX 16 AB7 HIS A 278 ASP A 286 1 9 HELIX 17 AB8 ASP A 296 LYS A 301 1 6 HELIX 18 AB9 THR A 303 GLY A 316 1 14 HELIX 19 AC1 THR A 318 SER A 332 1 15 HELIX 20 AC2 PRO A 336 GLY A 352 1 17 HELIX 21 AC3 LYS B 23 ARG B 34 1 12 HELIX 22 AC4 THR B 42 GLY B 51 1 10 HELIX 23 AC5 THR B 57 LYS B 64 1 8 HELIX 24 AC6 LYS B 64 ALA B 73 1 10 HELIX 25 AC7 CYS B 75 LYS B 92 1 18 HELIX 26 AC8 SER B 103 ALA B 108 1 6 HELIX 27 AC9 ILE B 115 GLN B 119 5 5 HELIX 28 AD1 THR B 125 GLY B 145 1 21 HELIX 29 AD2 TRP B 161 TYR B 172 1 12 HELIX 30 AD3 GLY B 190 LEU B 193 5 4 HELIX 31 AD4 LEU B 194 SER B 207 1 14 HELIX 32 AD5 SER B 220 ILE B 230 1 11 HELIX 33 AD6 GLY B 239 GLU B 244 5 6 HELIX 34 AD7 ASP B 245 GLU B 255 1 11 HELIX 35 AD8 CYS B 262 THR B 269 1 8 HELIX 36 AD9 ALA B 279 ASP B 286 1 8 HELIX 37 AE1 ASP B 296 LYS B 301 1 6 HELIX 38 AE2 THR B 303 GLY B 316 1 14 HELIX 39 AE3 THR B 318 SER B 332 1 15 HELIX 40 AE4 PRO B 336 TYR B 351 1 16 SHEET 1 AA1 8 LYS A 11 HIS A 17 0 SHEET 2 AA1 8 VAL A 95 TYR A 102 1 O ARG A 101 N VAL A 16 SHEET 3 AA1 8 LYS A 147 MET A 155 1 O ARG A 149 N VAL A 100 SHEET 4 AA1 8 VAL A 177 ALA A 183 1 O ALA A 183 N CYS A 154 SHEET 5 AA1 8 HIS A 210 HIS A 214 1 O THR A 212 N ILE A 180 SHEET 6 AA1 8 ARG A 235 GLY A 237 1 O GLY A 237 N VAL A 213 SHEET 7 AA1 8 HIS A 258 ILE A 261 1 O GLU A 260 N LEU A 236 SHEET 8 AA1 8 ASN A 289 LEU A 292 1 O ASN A 289 N PHE A 259 SHEET 1 AA2 8 LYS B 11 HIS B 17 0 SHEET 2 AA2 8 VAL B 95 TYR B 102 1 O ARG B 101 N VAL B 16 SHEET 3 AA2 8 LYS B 147 MET B 155 1 O LYS B 147 N VAL B 98 SHEET 4 AA2 8 VAL B 177 ALA B 183 1 O ALA B 183 N CYS B 154 SHEET 5 AA2 8 HIS B 210 HIS B 214 1 O THR B 212 N ILE B 180 SHEET 6 AA2 8 ARG B 235 GLY B 237 1 O GLY B 237 N VAL B 213 SHEET 7 AA2 8 HIS B 258 ILE B 261 1 O GLU B 260 N LEU B 236 SHEET 8 AA2 8 ASN B 289 LEU B 292 1 O SER B 291 N PHE B 259 LINK NE2 HIS A 15 ZN ZN A 401 1555 1555 2.04 LINK NE2 HIS A 17 ZN ZN A 401 1555 1555 2.07 LINK NE2 HIS A 214 ZN ZN A 401 1555 1555 2.13 LINK OD1 ASP A 295 ZN ZN A 401 1555 1555 2.14 LINK ZN ZN A 401 O HOH A 502 1555 1555 2.53 LINK NE2 HIS B 15 ZN ZN B 401 1555 1555 2.03 LINK NE2 HIS B 17 ZN ZN B 401 1555 1555 2.05 LINK NE2 HIS B 214 ZN ZN B 401 1555 1555 2.03 LINK OD1 ASP B 295 ZN ZN B 401 1555 1555 2.03 LINK ZN ZN B 401 O HOH B 503 1555 1555 2.31 CISPEP 1 GLU A 113 PRO A 114 0 -5.44 CISPEP 2 GLU B 113 PRO B 114 0 -5.06 CRYST1 80.910 49.519 89.085 90.00 96.18 90.00 P 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012359 0.000000 0.001338 0.00000 SCALE2 0.000000 0.020194 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011291 0.00000