HEADER LYASE 16-AUG-21 7RU7 TITLE CRYSTAL STRUCTURE OF BTRK, A DECARBOXYLASE INVOLVED IN BUTIROSIN TITLE 2 BIOSYNTHESIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-GLUTAMYL-[BTRI ACYL-CARRIER PROTEIN] DECARBOXYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BUTIROSIN BIOSYNTHESIS PROTEIN K, BTRK; COMPND 5 EC: 4.1.1.95; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS CIRCULANS; SOURCE 3 ORGANISM_TAXID: 1397; SOURCE 4 GENE: BTRK; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS CARBOXYLASE, PLP-DEPENDENT, AMINOGLYCOSIDE, BUTIROSIN, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR L.A.R.ARENAS,F.C.R.PAIVA,F.HUANG,P.LEADLAY,M.V.B.DIAS REVDAT 2 18-OCT-23 7RU7 1 REMARK REVDAT 1 17-AUG-22 7RU7 0 JRNL AUTH L.A.RIVAS ARENAS,F.C.DE PAIVA,N.DE O.ROSSINI,Y.LI,J.SPENCER, JRNL AUTH 2 P.LEADLAY,M.V.DIAS JRNL TITL CRYSTAL STRUCTURE OF BTRK, A DECARBOXYLASE INVOLVED IN THE JRNL TITL 2 (S)-4-AMINO-2-HYDROXYBUTYRATE (AHBA) FORMATION DURING JRNL TITL 3 BUTIROSIN BIOSYNTHESIS JRNL REF J.MOL.STRUCT. V.1267 33576 2022 JRNL REFN ISSN 0022-2860 JRNL DOI 10.1016/J.MOLSTRUC.2022.133576 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.1-3865 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 84754 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 4190 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.7200 - 4.3500 1.00 2934 148 0.1719 0.1860 REMARK 3 2 4.3500 - 3.4500 1.00 2780 135 0.1517 0.1668 REMARK 3 3 3.4500 - 3.0200 1.00 2731 150 0.1634 0.1817 REMARK 3 4 3.0200 - 2.7400 1.00 2727 160 0.1736 0.1940 REMARK 3 5 2.7400 - 2.5500 1.00 2693 146 0.1733 0.2183 REMARK 3 6 2.5400 - 2.4000 1.00 2711 133 0.1799 0.1926 REMARK 3 7 2.3900 - 2.2800 1.00 2692 161 0.1701 0.1859 REMARK 3 8 2.2800 - 2.1800 1.00 2683 134 0.1721 0.1814 REMARK 3 9 2.1800 - 2.0900 1.00 2717 122 0.1664 0.1754 REMARK 3 10 2.0900 - 2.0200 1.00 2697 154 0.1698 0.1831 REMARK 3 11 2.0200 - 1.9600 1.00 2668 155 0.1750 0.1919 REMARK 3 12 1.9600 - 1.9000 1.00 2673 124 0.1714 0.1907 REMARK 3 13 1.9000 - 1.8500 1.00 2668 136 0.1756 0.2222 REMARK 3 14 1.8500 - 1.8100 1.00 2683 158 0.1754 0.1939 REMARK 3 15 1.8100 - 1.7600 1.00 2637 142 0.1898 0.2078 REMARK 3 16 1.7600 - 1.7300 1.00 2706 134 0.1852 0.2298 REMARK 3 17 1.7300 - 1.6900 1.00 2669 130 0.1928 0.1960 REMARK 3 18 1.6900 - 1.6600 1.00 2684 124 0.2106 0.2313 REMARK 3 19 1.6600 - 1.6300 1.00 2627 147 0.2108 0.2425 REMARK 3 20 1.6300 - 1.6000 1.00 2680 121 0.2055 0.2517 REMARK 3 21 1.6000 - 1.5800 1.00 2628 140 0.2189 0.2156 REMARK 3 22 1.5800 - 1.5500 1.00 2705 132 0.2349 0.2612 REMARK 3 23 1.5500 - 1.5300 1.00 2627 142 0.2388 0.2749 REMARK 3 24 1.5300 - 1.5100 1.00 2670 146 0.2513 0.2820 REMARK 3 25 1.5100 - 1.4900 1.00 2670 124 0.2587 0.2705 REMARK 3 26 1.4900 - 1.4700 1.00 2622 154 0.2698 0.2728 REMARK 3 27 1.4700 - 1.4500 1.00 2684 131 0.2785 0.2789 REMARK 3 28 1.4500 - 1.4300 1.00 2635 141 0.2983 0.3167 REMARK 3 29 1.4300 - 1.4200 1.00 2641 137 0.3045 0.3435 REMARK 3 30 1.4200 - 1.4000 0.98 2622 129 0.3217 0.3257 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 1.8368 275.0025 -31.6107 REMARK 3 T TENSOR REMARK 3 T11: 0.1941 T22: 0.2028 REMARK 3 T33: 0.1660 T12: -0.0137 REMARK 3 T13: -0.0081 T23: -0.0143 REMARK 3 L TENSOR REMARK 3 L11: 0.6903 L22: 1.2098 REMARK 3 L33: 0.2535 L12: -0.3281 REMARK 3 L13: -0.0483 L23: -0.1077 REMARK 3 S TENSOR REMARK 3 S11: -0.0009 S12: 0.0663 S13: 0.0552 REMARK 3 S21: -0.0070 S22: -0.0183 S23: -0.1212 REMARK 3 S31: 0.0097 S32: 0.0085 S33: 0.0198 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7RU7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1000259039. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976260 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 84831 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 48.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.00 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 12.80 REMARK 200 R MERGE FOR SHELL (I) : 2.55400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2J66 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% PEG400, 100 MM MES, 200 MM REMARK 280 MAGNESIUM CHLORIDE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 35.95600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 64.77200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.95600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 64.77200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 518.17600 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 760 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 ARG A 312 REMARK 465 GLY A 313 REMARK 465 ARG A 314 REMARK 465 SER A 315 REMARK 465 MET A 316 REMARK 465 ARG A 317 REMARK 465 THR A 419 REMARK 465 GLU A 420 REMARK 465 SER A 421 REMARK 465 ASN A 422 REMARK 465 LEU A 423 REMARK 465 LEU A 424 REMARK 465 PHE A 425 REMARK 465 VAL A 426 REMARK 465 ASP A 427 REMARK 465 LYS A 428 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 255 CG CD OE1 OE2 REMARK 470 ARG A 328 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 329 CG CD OE1 OE2 REMARK 470 GLU A 349 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 157 O HOH A 701 2.02 REMARK 500 O ASN A 140 O HOH A 702 2.05 REMARK 500 NH2 ARG A 138 O HOH A 701 2.08 REMARK 500 O HOH A 911 O HOH A 968 2.10 REMARK 500 NH1 ARG A 247 O HOH A 703 2.12 REMARK 500 O HOH A 836 O HOH A 1011 2.13 REMARK 500 NZ LYS A 143 O HOH A 704 2.14 REMARK 500 O HOH A 757 O HOH A 1011 2.15 REMARK 500 O TYR A 187 O HOH A 701 2.15 REMARK 500 OE2 GLU A 7 OH TYR A 400 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 949 O HOH A 975 2595 2.09 REMARK 500 OD1 ASP A 167 O HOH A 703 4493 2.15 REMARK 500 NZ LYS A 292 O HOH A 702 2595 2.17 REMARK 500 O HOH A 1031 O HOH A 1033 4494 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 90 CB - CG - CD2 ANGL. DEV. = -5.2 DEGREES REMARK 500 PHE A 311 CB - CG - CD2 ANGL. DEV. = -4.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 51 116.16 -167.81 REMARK 500 THR A 259 -89.13 -113.49 REMARK 500 GLU A 329 63.38 -105.30 REMARK 500 ASP A 330 14.75 -167.41 REMARK 500 SER A 331 -42.67 -137.41 REMARK 500 ARG A 333 50.28 -95.74 REMARK 500 ARG A 334 35.11 -94.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 PHE A 90 0.07 SIDE CHAIN REMARK 500 PHE A 311 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1042 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A1043 DISTANCE = 6.44 ANGSTROMS DBREF 7RU7 A 1 428 UNP Q2L4H3 BTRK_BACCI 1 428 SEQADV 7RU7 MET A -19 UNP Q2L4H3 EXPRESSION TAG SEQADV 7RU7 GLY A -18 UNP Q2L4H3 EXPRESSION TAG SEQADV 7RU7 SER A -17 UNP Q2L4H3 EXPRESSION TAG SEQADV 7RU7 SER A -16 UNP Q2L4H3 EXPRESSION TAG SEQADV 7RU7 HIS A -15 UNP Q2L4H3 EXPRESSION TAG SEQADV 7RU7 HIS A -14 UNP Q2L4H3 EXPRESSION TAG SEQADV 7RU7 HIS A -13 UNP Q2L4H3 EXPRESSION TAG SEQADV 7RU7 HIS A -12 UNP Q2L4H3 EXPRESSION TAG SEQADV 7RU7 HIS A -11 UNP Q2L4H3 EXPRESSION TAG SEQADV 7RU7 HIS A -10 UNP Q2L4H3 EXPRESSION TAG SEQADV 7RU7 SER A -9 UNP Q2L4H3 EXPRESSION TAG SEQADV 7RU7 SER A -8 UNP Q2L4H3 EXPRESSION TAG SEQADV 7RU7 GLY A -7 UNP Q2L4H3 EXPRESSION TAG SEQADV 7RU7 LEU A -6 UNP Q2L4H3 EXPRESSION TAG SEQADV 7RU7 VAL A -5 UNP Q2L4H3 EXPRESSION TAG SEQADV 7RU7 PRO A -4 UNP Q2L4H3 EXPRESSION TAG SEQADV 7RU7 ARG A -3 UNP Q2L4H3 EXPRESSION TAG SEQADV 7RU7 GLY A -2 UNP Q2L4H3 EXPRESSION TAG SEQADV 7RU7 SER A -1 UNP Q2L4H3 EXPRESSION TAG SEQADV 7RU7 HIS A 0 UNP Q2L4H3 EXPRESSION TAG SEQRES 1 A 448 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 448 LEU VAL PRO ARG GLY SER HIS MET ASN LEU ASP GLN ALA SEQRES 3 A 448 GLU ILE THR ALA LEU THR LYS ARG PHE GLU THR PRO PHE SEQRES 4 A 448 TYR LEU TYR ASP GLY ASP PHE ILE GLU ALA HIS TYR ARG SEQRES 5 A 448 GLN LEU ARG SER ARG THR ASN PRO ALA ILE GLN PHE TYR SEQRES 6 A 448 LEU SER LEU LYS ALA ASN ASN ASN ILE HIS LEU ALA LYS SEQRES 7 A 448 LEU PHE ARG GLN TRP GLY LEU GLY VAL GLU VAL ALA SER SEQRES 8 A 448 ALA GLY GLU LEU ALA LEU ALA ARG HIS ALA GLY PHE SER SEQRES 9 A 448 ALA GLU ASN ILE ILE PHE SER GLY PRO GLY LYS LYS ARG SEQRES 10 A 448 SER GLU LEU GLU ILE ALA VAL GLN SER GLY ILE TYR CYS SEQRES 11 A 448 ILE ILE ALA GLU SER VAL GLU GLU LEU PHE TYR ILE GLU SEQRES 12 A 448 GLU LEU ALA GLU LYS GLU ASN LYS THR ALA ARG VAL ALA SEQRES 13 A 448 ILE ARG ILE ASN PRO ASP LYS SER PHE GLY SER THR ALA SEQRES 14 A 448 ILE LYS MET GLY GLY VAL PRO ARG GLN PHE GLY MET ASP SEQRES 15 A 448 GLU SER MET LEU ASP ALA VAL MET ASP ALA VAL ARG SER SEQRES 16 A 448 LEU GLN PHE THR LYS PHE ILE GLY ILE HIS VAL TYR THR SEQRES 17 A 448 GLY THR GLN ASN LEU ASN THR ASP SER ILE ILE GLU SER SEQRES 18 A 448 MET LYS TYR THR VAL ASP LEU GLY ARG ASN ILE TYR GLU SEQRES 19 A 448 ARG TYR GLY ILE VAL CYS GLU CYS ILE ASN LEU GLY GLY SEQRES 20 A 448 GLY PHE GLY VAL PRO TYR PHE SER HIS GLU LYS ALA LEU SEQRES 21 A 448 ASP ILE GLY LYS ILE THR ARG THR VAL SER ASP TYR VAL SEQRES 22 A 448 GLN GLU ALA ARG ASP THR ARG PHE PRO GLN THR THR PHE SEQRES 23 A 448 ILE ILE GLU SER GLY ARG TYR LEU LEU ALA GLN ALA ALA SEQRES 24 A 448 VAL TYR VAL THR GLU VAL LEU TYR ARG LYS ALA SER LYS SEQRES 25 A 448 GLY GLU VAL PHE VAL ILE VAL ASP GLY GLY MET HIS HIS SEQRES 26 A 448 HIS ALA ALA SER THR PHE ARG GLY ARG SER MET ARG SER SEQRES 27 A 448 ASN TYR PRO MET GLU TYR ILE PRO VAL ARG GLU ASP SER SEQRES 28 A 448 GLY ARG ARG GLU LEU GLU LYS VAL THR ILE ALA GLY PRO SEQRES 29 A 448 LEU CYS THR PRO GLU ASP CYS LEU GLY LYS ASP VAL HIS SEQRES 30 A 448 VAL PRO ALA LEU TYR PRO GLY ASP LEU VAL CYS VAL LEU SEQRES 31 A 448 ASN SER GLY ALA TYR GLY LEU SER PHE SER PRO VAL HIS SEQRES 32 A 448 PHE LEU GLY HIS PRO THR PRO ILE GLU ILE LEU LYS ARG SEQRES 33 A 448 ASN GLY SER TYR GLU LEU ILE ARG ARG LYS GLY THR ALA SEQRES 34 A 448 ASP ASP ILE VAL ALA THR GLN LEU GLN THR GLU SER ASN SEQRES 35 A 448 LEU LEU PHE VAL ASP LYS HET PLP A 601 15 HET PEG A 602 7 HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN PLP VITAMIN B6 PHOSPHATE FORMUL 2 PLP C8 H10 N O6 P FORMUL 3 PEG C4 H10 O3 FORMUL 4 HOH *343(H2 O) HELIX 1 AA1 ASP A 4 PHE A 15 1 12 HELIX 2 AA2 GLY A 24 ARG A 37 1 14 HELIX 3 AA3 LYS A 49 ASN A 51 5 3 HELIX 4 AA4 ASN A 53 GLY A 64 1 12 HELIX 5 AA5 SER A 71 ALA A 81 1 11 HELIX 6 AA6 SER A 84 GLU A 86 5 3 HELIX 7 AA7 LYS A 96 GLY A 107 1 12 HELIX 8 AA8 SER A 115 ASN A 130 1 16 HELIX 9 AA9 MET A 165 SER A 175 1 11 HELIX 10 AB1 ASN A 194 GLY A 217 1 24 HELIX 11 AB2 ASP A 241 THR A 259 1 19 HELIX 12 AB3 GLY A 271 ALA A 276 1 6 HELIX 13 AB4 HIS A 306 PHE A 311 5 6 HELIX 14 AB5 GLY A 376 SER A 380 5 5 HELIX 15 AB6 HIS A 383 HIS A 387 5 5 HELIX 16 AB7 THR A 408 GLN A 418 1 11 SHEET 1 AA1 6 MET A 322 ILE A 325 0 SHEET 2 AA1 6 LEU A 366 VAL A 369 -1 O CYS A 368 N GLU A 323 SHEET 3 AA1 6 ALA A 279 SER A 291 -1 N THR A 283 O VAL A 367 SHEET 4 AA1 6 GLU A 294 VAL A 299 -1 O PHE A 296 N LYS A 289 SHEET 5 AA1 6 LEU A 336 ALA A 342 1 O ALA A 342 N VAL A 299 SHEET 6 AA1 6 CYS A 351 PRO A 359 -1 O VAL A 356 N VAL A 339 SHEET 1 AA2 6 MET A 322 ILE A 325 0 SHEET 2 AA2 6 LEU A 366 VAL A 369 -1 O CYS A 368 N GLU A 323 SHEET 3 AA2 6 ALA A 279 SER A 291 -1 N THR A 283 O VAL A 367 SHEET 4 AA2 6 PHE A 19 ASP A 23 -1 N PHE A 19 O VAL A 282 SHEET 5 AA2 6 ILE A 391 ARG A 396 1 O LYS A 395 N TYR A 22 SHEET 6 AA2 6 SER A 399 ARG A 404 -1 O GLU A 401 N LEU A 394 SHEET 1 AA310 MET A 161 ASP A 162 0 SHEET 2 AA310 ALA A 133 ASN A 140 1 N ASN A 140 O MET A 161 SHEET 3 AA310 THR A 179 HIS A 185 1 O ILE A 182 N VAL A 135 SHEET 4 AA310 CYS A 222 ASN A 224 1 O ASN A 224 N ILE A 184 SHEET 5 AA310 THR A 265 SER A 270 1 O THR A 265 N ILE A 223 SHEET 6 AA310 ILE A 42 SER A 47 1 N GLN A 43 O PHE A 266 SHEET 7 AA310 GLY A 66 VAL A 69 1 O GLU A 68 N LEU A 46 SHEET 8 AA310 ILE A 88 PHE A 90 1 O ILE A 89 N VAL A 69 SHEET 9 AA310 CYS A 110 ALA A 113 1 O ILE A 112 N PHE A 90 SHEET 10 AA310 ALA A 133 ASN A 140 1 O ALA A 136 N ALA A 113 LINK NZ LYS A 49 C4A PLP A 601 1555 1555 1.43 CISPEP 1 THR A 17 PRO A 18 0 -0.88 CRYST1 71.912 129.544 45.721 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013906 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007719 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021872 0.00000