HEADER HYDROLASE 17-AUG-21 7RUM TITLE ENDOLYSIN FROM ESCHERICHIA COLI O157:H7 PHAGE FTEBC1, LYST84 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDOLYSIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA PHAGE GEC_VB_GOT; SOURCE 3 ORGANISM_TAXID: 2777375; SOURCE 4 GENE: GECVBGOT_GP079C; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS ENDOLYSIN, PEPTIDOGLYCAN HYDROLASE, BACTERIOPHAGE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.J.LOVE,C.BILLINGTON,R.C.J.DOBSON REVDAT 2 18-OCT-23 7RUM 1 REMARK REVDAT 1 09-FEB-22 7RUM 0 JRNL AUTH M.J.LOVE,D.COOMBES,S.ISMAIL,C.BILLINGTON,R.C.J.DOBSON JRNL TITL THE STRUCTURE AND FUNCTION OF MODULAR ESCHERICHIA COLI JRNL TITL 2 O157:H7 BACTERIOPHAGE FTBEC1 ENDOLYSIN, LYST84: DEFINING A JRNL TITL 3 NEW ENDOLYSIN CATALYTIC SUBFAMILY. JRNL REF BIOCHEM.J. V. 479 207 2022 JRNL REFN ESSN 1470-8728 JRNL PMID 34935873 JRNL DOI 10.1042/BCJ20210701 REMARK 2 REMARK 2 RESOLUTION. 2.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19-40 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.04 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.920 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 26300 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1333 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.0400 - 6.4400 1.00 2745 159 0.2371 0.2785 REMARK 3 2 6.4400 - 5.1100 1.00 2557 137 0.2517 0.2631 REMARK 3 3 5.1100 - 4.4700 1.00 2519 130 0.2019 0.2299 REMARK 3 4 4.4700 - 4.0600 1.00 2506 127 0.1889 0.2550 REMARK 3 5 4.0600 - 3.7700 1.00 2466 132 0.2029 0.2288 REMARK 3 6 3.7700 - 3.5500 1.00 2468 122 0.2157 0.2450 REMARK 3 7 3.5500 - 3.3700 1.00 2424 140 0.2634 0.3186 REMARK 3 8 3.3700 - 3.2200 1.00 2464 119 0.2763 0.3147 REMARK 3 9 3.2200 - 3.1000 1.00 2444 121 0.2880 0.3568 REMARK 3 10 3.1000 - 2.9900 0.99 2374 146 0.3261 0.3677 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.393 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.884 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4078 REMARK 3 ANGLE : 0.519 5489 REMARK 3 CHIRALITY : 0.036 588 REMARK 3 PLANARITY : 0.004 715 REMARK 3 DIHEDRAL : 4.841 572 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -23.3299 -22.4033 15.3999 REMARK 3 T TENSOR REMARK 3 T11: 0.4923 T22: 0.3742 REMARK 3 T33: 0.3606 T12: -0.0687 REMARK 3 T13: 0.0299 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 0.1712 L22: 1.6085 REMARK 3 L33: 0.2839 L12: 0.4167 REMARK 3 L13: -0.0878 L23: -0.1866 REMARK 3 S TENSOR REMARK 3 S11: -0.0338 S12: -0.0405 S13: -0.0557 REMARK 3 S21: -0.2792 S22: -0.0535 S23: -0.0011 REMARK 3 S31: 0.1207 S32: -0.1459 S33: 0.0714 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and ((resid 4 and (name N or REMARK 3 name CA or name C or name O or name CB )) REMARK 3 or resid 5 through 27 or (resid 28 REMARK 3 through 29 and (name N or name CA or name REMARK 3 C or name O or name CB )) or resid 30 REMARK 3 through 64 or (resid 65 and (name N or REMARK 3 name CA or name C or name O or name CB )) REMARK 3 or resid 66 through 71 or (resid 72 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or resid 73 through 264 or REMARK 3 resid 380 through 381)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 4 through 102 or REMARK 3 (resid 103 and (name N or name CA or name REMARK 3 C or name O or name CB or name CG )) or REMARK 3 resid 104 through 227 or (resid 228 REMARK 3 through 229 and (name N or name CA or REMARK 3 name C or name O or name CB )) or resid REMARK 3 230 through 264 or resid 580 through 581)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7RUM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1000258781. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26401 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.990 REMARK 200 RESOLUTION RANGE LOW (A) : 49.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 18.50 REMARK 200 R MERGE (I) : 0.52100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.17 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 17.10 REMARK 200 R MERGE FOR SHELL (I) : 3.40300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5NM7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 76.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MORPHEUS I CONDITION F3: 0.12 M REMARK 280 MONOSACCHARIDES [0.2 M D-GLUCOSE; 0.2 M D-MANNOSE; 0.2 M D- REMARK 280 GALACTOSE; 0.2 M L-FUCOSE; 0.2 M D-XYLOSE; 0.2 M N-ACETYL-D- REMARK 280 GLUCOSAMINE] 0.1 M BUFFER SYSTEM 1 [1.0 M IMIDAZOLE; MES REMARK 280 MONOHYDRATE (ACID) PH 6.5], 30% V/V PRECIPITANT MIX 3 [40% V/V REMARK 280 GLYCEROL; 20% W/V PEG 4000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 246.17267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 123.08633 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 184.62950 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 61.54317 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 307.71583 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 246.17267 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 123.08633 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 61.54317 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 184.62950 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 307.71583 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 442 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 MET B -20 REMARK 465 GLY B -19 REMARK 465 SER B -18 REMARK 465 SER B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 SER B -10 REMARK 465 SER B -9 REMARK 465 GLY B -8 REMARK 465 GLU B -7 REMARK 465 ASN B -6 REMARK 465 LEU B -5 REMARK 465 TYR B -4 REMARK 465 PHE B -3 REMARK 465 GLN B -2 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ILE B 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 3 CG1 CG2 CD1 REMARK 470 SER A 11 OG REMARK 470 GLU A 12 CG CD OE1 OE2 REMARK 470 LYS A 14 CG CD CE NZ REMARK 470 ARG A 103 CD NE CZ NH1 NH2 REMARK 470 LYS A 228 CG CD CE NZ REMARK 470 LEU B 4 CG CD1 CD2 REMARK 470 SER B 11 OG REMARK 470 GLU B 12 CG CD OE1 OE2 REMARK 470 LYS B 14 CG CD CE NZ REMARK 470 VAL B 28 CG1 CG2 REMARK 470 ARG B 65 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 72 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 237 NH2 ARG A 240 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER B 150 OD1 ASP B 253 10445 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 8 41.33 -142.39 REMARK 500 SER A 11 -153.33 -154.75 REMARK 500 GLU A 12 28.64 -76.73 REMARK 500 SER B 11 -159.30 -154.98 REMARK 500 GLU B 12 39.45 -78.81 REMARK 500 ARG B 103 20.41 -79.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 440 DISTANCE = 9.60 ANGSTROMS DBREF1 7RUM A 1 264 UNP A0A7S9SQH6_9CAUD DBREF2 7RUM A A0A7S9SQH6 1 264 DBREF1 7RUM B 1 264 UNP A0A7S9SQH6_9CAUD DBREF2 7RUM B A0A7S9SQH6 1 264 SEQADV 7RUM MET A -20 UNP A0A7S9SQH EXPRESSION TAG SEQADV 7RUM GLY A -19 UNP A0A7S9SQH EXPRESSION TAG SEQADV 7RUM SER A -18 UNP A0A7S9SQH EXPRESSION TAG SEQADV 7RUM SER A -17 UNP A0A7S9SQH EXPRESSION TAG SEQADV 7RUM HIS A -16 UNP A0A7S9SQH EXPRESSION TAG SEQADV 7RUM HIS A -15 UNP A0A7S9SQH EXPRESSION TAG SEQADV 7RUM HIS A -14 UNP A0A7S9SQH EXPRESSION TAG SEQADV 7RUM HIS A -13 UNP A0A7S9SQH EXPRESSION TAG SEQADV 7RUM HIS A -12 UNP A0A7S9SQH EXPRESSION TAG SEQADV 7RUM HIS A -11 UNP A0A7S9SQH EXPRESSION TAG SEQADV 7RUM SER A -10 UNP A0A7S9SQH EXPRESSION TAG SEQADV 7RUM SER A -9 UNP A0A7S9SQH EXPRESSION TAG SEQADV 7RUM GLY A -8 UNP A0A7S9SQH EXPRESSION TAG SEQADV 7RUM GLU A -7 UNP A0A7S9SQH EXPRESSION TAG SEQADV 7RUM ASN A -6 UNP A0A7S9SQH EXPRESSION TAG SEQADV 7RUM LEU A -5 UNP A0A7S9SQH EXPRESSION TAG SEQADV 7RUM TYR A -4 UNP A0A7S9SQH EXPRESSION TAG SEQADV 7RUM PHE A -3 UNP A0A7S9SQH EXPRESSION TAG SEQADV 7RUM GLN A -2 UNP A0A7S9SQH EXPRESSION TAG SEQADV 7RUM GLY A -1 UNP A0A7S9SQH EXPRESSION TAG SEQADV 7RUM HIS A 0 UNP A0A7S9SQH EXPRESSION TAG SEQADV 7RUM MET B -20 UNP A0A7S9SQH EXPRESSION TAG SEQADV 7RUM GLY B -19 UNP A0A7S9SQH EXPRESSION TAG SEQADV 7RUM SER B -18 UNP A0A7S9SQH EXPRESSION TAG SEQADV 7RUM SER B -17 UNP A0A7S9SQH EXPRESSION TAG SEQADV 7RUM HIS B -16 UNP A0A7S9SQH EXPRESSION TAG SEQADV 7RUM HIS B -15 UNP A0A7S9SQH EXPRESSION TAG SEQADV 7RUM HIS B -14 UNP A0A7S9SQH EXPRESSION TAG SEQADV 7RUM HIS B -13 UNP A0A7S9SQH EXPRESSION TAG SEQADV 7RUM HIS B -12 UNP A0A7S9SQH EXPRESSION TAG SEQADV 7RUM HIS B -11 UNP A0A7S9SQH EXPRESSION TAG SEQADV 7RUM SER B -10 UNP A0A7S9SQH EXPRESSION TAG SEQADV 7RUM SER B -9 UNP A0A7S9SQH EXPRESSION TAG SEQADV 7RUM GLY B -8 UNP A0A7S9SQH EXPRESSION TAG SEQADV 7RUM GLU B -7 UNP A0A7S9SQH EXPRESSION TAG SEQADV 7RUM ASN B -6 UNP A0A7S9SQH EXPRESSION TAG SEQADV 7RUM LEU B -5 UNP A0A7S9SQH EXPRESSION TAG SEQADV 7RUM TYR B -4 UNP A0A7S9SQH EXPRESSION TAG SEQADV 7RUM PHE B -3 UNP A0A7S9SQH EXPRESSION TAG SEQADV 7RUM GLN B -2 UNP A0A7S9SQH EXPRESSION TAG SEQADV 7RUM GLY B -1 UNP A0A7S9SQH EXPRESSION TAG SEQADV 7RUM HIS B 0 UNP A0A7S9SQH EXPRESSION TAG SEQRES 1 A 285 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 285 GLU ASN LEU TYR PHE GLN GLY HIS MET ALA ILE LEU LYS SEQRES 3 A 285 LEU GLY ASN ARG GLY SER GLU VAL LYS SER LEU GLN GLN SEQRES 4 A 285 SER LEU ASN LYS ILE GLY PHE SER LEU VAL ALA ASP GLY SEQRES 5 A 285 ILE PHE GLY LYS ALA THR GLU ASN ALA VAL LYS SER VAL SEQRES 6 A 285 GLN ALA GLY ALA GLY LEU VAL ILE ASP GLY ILE ALA GLY SEQRES 7 A 285 PRO LYS THR PHE TYR ALA ILE ARG ASN ALA GLY ASP ALA SEQRES 8 A 285 HIS GLN GLU HIS LEU THR GLU ALA ASP LEU VAL ASP ALA SEQRES 9 A 285 ALA ARG GLU LEU GLY VAL GLU LEU ALA SER MET LYS ALA SEQRES 10 A 285 VAL ASN GLN VAL GLU SER ARG GLY THR GLY PHE THR LYS SEQRES 11 A 285 THR GLY LYS ILE LYS THR LEU PHE GLU ARG HIS ILE MET SEQRES 12 A 285 TYR LYS LYS VAL ALA ALA LYS PHE GLY GLN ALA ARG ALA SEQRES 13 A 285 ASN ALA LEU TYR GLN LEU TYR PRO THR LEU VAL ASN PRO SEQRES 14 A 285 ASN SER GLY GLY TYR ILE GLY GLY ASP ALA GLU LEU GLU SEQRES 15 A 285 ARG LEU GLN GLY ALA ILE ALA LEU ASP GLU ASP CYS ALA SEQRES 16 A 285 TYR GLU SER ALA SER TYR GLY LEU PHE GLN ILE MET GLY SEQRES 17 A 285 PHE ASN CYS GLN ILE CYS GLY TYR PRO ASN ALA LYS GLU SEQRES 18 A 285 MET PHE THR ASP PHE LEU THR GLY GLU ARG ALA HIS LEU SEQRES 19 A 285 LEU ALA PHE VAL LYS PHE ILE LYS ALA ASP ALA ASN MET SEQRES 20 A 285 TRP LYS ALA LEU LYS ASN LYS ASN TRP ALA GLU PHE ALA SEQRES 21 A 285 ARG ARG TYR ASN GLY PRO ALA TYR ALA LYS ASN GLN TYR SEQRES 22 A 285 ASP THR LYS LEU ALA ALA ALA TYR LYS SER PHE CYS SEQRES 1 B 285 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 285 GLU ASN LEU TYR PHE GLN GLY HIS MET ALA ILE LEU LYS SEQRES 3 B 285 LEU GLY ASN ARG GLY SER GLU VAL LYS SER LEU GLN GLN SEQRES 4 B 285 SER LEU ASN LYS ILE GLY PHE SER LEU VAL ALA ASP GLY SEQRES 5 B 285 ILE PHE GLY LYS ALA THR GLU ASN ALA VAL LYS SER VAL SEQRES 6 B 285 GLN ALA GLY ALA GLY LEU VAL ILE ASP GLY ILE ALA GLY SEQRES 7 B 285 PRO LYS THR PHE TYR ALA ILE ARG ASN ALA GLY ASP ALA SEQRES 8 B 285 HIS GLN GLU HIS LEU THR GLU ALA ASP LEU VAL ASP ALA SEQRES 9 B 285 ALA ARG GLU LEU GLY VAL GLU LEU ALA SER MET LYS ALA SEQRES 10 B 285 VAL ASN GLN VAL GLU SER ARG GLY THR GLY PHE THR LYS SEQRES 11 B 285 THR GLY LYS ILE LYS THR LEU PHE GLU ARG HIS ILE MET SEQRES 12 B 285 TYR LYS LYS VAL ALA ALA LYS PHE GLY GLN ALA ARG ALA SEQRES 13 B 285 ASN ALA LEU TYR GLN LEU TYR PRO THR LEU VAL ASN PRO SEQRES 14 B 285 ASN SER GLY GLY TYR ILE GLY GLY ASP ALA GLU LEU GLU SEQRES 15 B 285 ARG LEU GLN GLY ALA ILE ALA LEU ASP GLU ASP CYS ALA SEQRES 16 B 285 TYR GLU SER ALA SER TYR GLY LEU PHE GLN ILE MET GLY SEQRES 17 B 285 PHE ASN CYS GLN ILE CYS GLY TYR PRO ASN ALA LYS GLU SEQRES 18 B 285 MET PHE THR ASP PHE LEU THR GLY GLU ARG ALA HIS LEU SEQRES 19 B 285 LEU ALA PHE VAL LYS PHE ILE LYS ALA ASP ALA ASN MET SEQRES 20 B 285 TRP LYS ALA LEU LYS ASN LYS ASN TRP ALA GLU PHE ALA SEQRES 21 B 285 ARG ARG TYR ASN GLY PRO ALA TYR ALA LYS ASN GLN TYR SEQRES 22 B 285 ASP THR LYS LEU ALA ALA ALA TYR LYS SER PHE CYS HET GOL A 301 6 HET GOL A 302 14 HET GOL B 301 6 HET GOL B 302 14 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 4(C3 H8 O3) FORMUL 7 HOH *87(H2 O) HELIX 1 AA1 GLU A 12 ILE A 23 1 12 HELIX 2 AA2 GLY A 34 GLY A 49 1 16 HELIX 3 AA3 GLY A 57 ASN A 66 1 10 HELIX 4 AA4 THR A 76 GLY A 88 1 13 HELIX 5 AA5 GLU A 90 SER A 102 1 13 HELIX 6 AA6 GLU A 118 PHE A 130 1 13 HELIX 7 AA7 GLY A 131 TYR A 142 1 12 HELIX 8 AA8 ASP A 157 ASP A 170 1 14 HELIX 9 AA9 ASP A 170 SER A 177 1 8 HELIX 10 AB1 PHE A 188 GLN A 191 5 4 HELIX 11 AB2 ASN A 197 LEU A 206 1 10 HELIX 12 AB3 GLY A 208 ASP A 223 1 16 HELIX 13 AB4 ASP A 223 ASN A 232 1 10 HELIX 14 AB5 ASN A 234 GLY A 244 1 11 HELIX 15 AB6 PRO A 245 ALA A 248 5 4 HELIX 16 AB7 GLN A 251 PHE A 263 1 13 HELIX 17 AB8 VAL B 13 ILE B 23 1 11 HELIX 18 AB9 GLY B 34 GLY B 49 1 16 HELIX 19 AC1 GLY B 57 ARG B 65 1 9 HELIX 20 AC2 ASN B 66 ASP B 69 5 4 HELIX 21 AC3 THR B 76 GLY B 88 1 13 HELIX 22 AC4 GLU B 90 SER B 102 1 13 HELIX 23 AC5 GLU B 118 TYR B 142 1 25 HELIX 24 AC6 GLY B 155 ASP B 170 1 16 HELIX 25 AC7 ASP B 170 SER B 177 1 8 HELIX 26 AC8 PHE B 188 GLN B 191 5 4 HELIX 27 AC9 ASN B 197 LEU B 206 1 10 HELIX 28 AD1 GLY B 208 ASP B 223 1 16 HELIX 29 AD2 ASP B 223 ASN B 232 1 10 HELIX 30 AD3 ASN B 234 GLY B 244 1 11 HELIX 31 AD4 PRO B 245 ALA B 248 5 4 HELIX 32 AD5 GLN B 251 PHE B 263 1 13 SHEET 1 AA1 3 THR A 115 PHE A 117 0 SHEET 2 AA1 3 ALA A 178 TYR A 180 -1 O SER A 179 N LEU A 116 SHEET 3 AA1 3 ILE A 185 MET A 186 -1 O ILE A 185 N TYR A 180 SHEET 1 AA2 3 THR B 115 PHE B 117 0 SHEET 2 AA2 3 ALA B 178 TYR B 180 -1 O SER B 179 N LEU B 116 SHEET 3 AA2 3 ILE B 185 MET B 186 -1 O ILE B 185 N TYR B 180 SSBOND 1 CYS A 264 CYS B 264 1555 1555 2.03 CRYST1 106.928 106.928 369.259 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009352 0.005399 0.000000 0.00000 SCALE2 0.000000 0.010799 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002708 0.00000 MTRIX1 1 0.872399 -0.488645 -0.012042 -13.72990 1 MTRIX2 1 -0.488789 -0.872230 -0.017308 -53.39523 1 MTRIX3 1 -0.002046 0.020985 -0.999778 30.52111 1