HEADER UNKNOWN FUNCTION 20-AUG-21 7RWK TITLE STRUCTURE OF CAP5 FROM ASTICCACAULIS SP. COMPND MOL_ID: 1; COMPND 2 MOLECULE: SAVED DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASTICCACAULIS SP. YBE204; SOURCE 3 ORGANISM_TAXID: 1282363; SOURCE 4 GENE: AEYBE204_11915; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNA NUCLEASE SAVED SENSOR EFFECTOR, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR R.H.HUANG,S.FATMA,A.CHAKRAVARTI REVDAT 4 22-MAY-24 7RWK 1 REMARK REVDAT 3 24-NOV-21 7RWK 1 JRNL REVDAT 2 17-NOV-21 7RWK 1 JRNL REVDAT 1 10-NOV-21 7RWK 0 JRNL AUTH S.FATMA,A.CHAKRAVARTI,X.ZENG,R.H.HUANG JRNL TITL MOLECULAR MECHANISMS OF THE CDNG-CAP5 ANTIPHAGE DEFENSE JRNL TITL 2 SYSTEM EMPLOYING 3',2'-CGAMP AS THE SECOND MESSENGER. JRNL REF NAT COMMUN V. 12 6381 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 34737303 JRNL DOI 10.1038/S41467-021-26738-2 REMARK 2 REMARK 2 RESOLUTION. 2.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 35476 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.630 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.7200 - 5.7500 0.99 2575 154 0.1700 0.1998 REMARK 3 2 5.7400 - 4.5600 1.00 2476 148 0.1659 0.1926 REMARK 3 3 4.5600 - 3.9900 1.00 2448 146 0.1504 0.1801 REMARK 3 4 3.9900 - 3.6200 1.00 2414 144 0.1730 0.2192 REMARK 3 5 3.6200 - 3.3600 1.00 2431 146 0.1870 0.2351 REMARK 3 6 3.3600 - 3.1600 1.00 2399 143 0.2047 0.2539 REMARK 3 7 3.1600 - 3.0100 1.00 2401 143 0.2327 0.3047 REMARK 3 8 3.0100 - 2.8700 1.00 2400 144 0.2312 0.2799 REMARK 3 9 2.8700 - 2.7600 1.00 2384 141 0.2281 0.2935 REMARK 3 10 2.7600 - 2.6700 1.00 2396 144 0.2298 0.2693 REMARK 3 11 2.6700 - 2.5900 1.00 2390 143 0.2275 0.2866 REMARK 3 12 2.5900 - 2.5100 1.00 2384 141 0.2447 0.2991 REMARK 3 13 2.5100 - 2.4500 1.00 2380 142 0.2421 0.2908 REMARK 3 14 2.4500 - 2.3900 0.85 1999 120 0.2464 0.2506 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.720 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 4 THROUGH 40 OR REMARK 3 (RESID 41 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 42 REMARK 3 THROUGH 401 OR RESID 501)) REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 2268 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7RWK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1000259148. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-20 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35476 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.390 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.36800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15-17% PEG6000, 100 MM TRIS-HCL, PH REMARK 280 8.5, 100 MM NACL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.65550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.59200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.46100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.59200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.65550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.46100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 LYS A 3 REMARK 465 GLY A 372 REMARK 465 VAL A 373 REMARK 465 SER A 374 REMARK 465 ILE A 375 REMARK 465 PRO A 376 REMARK 465 LYS A 377 REMARK 465 THR A 378 REMARK 465 GLU A 379 REMARK 465 GLU A 380 REMARK 465 PRO A 381 REMARK 465 ILE A 382 REMARK 465 TYR A 383 REMARK 465 GLY A 384 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 LYS B 3 REMARK 465 GLY B 372 REMARK 465 VAL B 373 REMARK 465 SER B 374 REMARK 465 ILE B 375 REMARK 465 PRO B 376 REMARK 465 LYS B 377 REMARK 465 THR B 378 REMARK 465 GLU B 379 REMARK 465 GLU B 380 REMARK 465 PRO B 381 REMARK 465 ILE B 382 REMARK 465 TYR B 383 REMARK 465 GLY B 384 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 41 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 657 O HOH B 673 1.92 REMARK 500 ND2 ASN A 179 O HOH A 501 1.95 REMARK 500 O HOH B 649 O HOH B 687 1.95 REMARK 500 NE2 GLN A 136 O HOH A 502 1.96 REMARK 500 O THR B 274 N GLY B 278 2.03 REMARK 500 OE1 GLU B 289 O HOH B 501 2.03 REMARK 500 O HOH B 683 O HOH B 688 2.04 REMARK 500 O HOH B 683 O HOH B 691 2.05 REMARK 500 O HOH A 641 O HOH A 647 2.06 REMARK 500 OD1 ASP B 167 O HOH B 502 2.07 REMARK 500 O HIS A 131 O HOH A 503 2.08 REMARK 500 O HOH B 624 O HOH B 670 2.08 REMARK 500 O HOH B 613 O HOH B 684 2.11 REMARK 500 O HOH A 643 O HOH A 653 2.12 REMARK 500 O HOH B 684 O HOH B 689 2.12 REMARK 500 O HOH B 543 O HOH B 550 2.12 REMARK 500 O HOH A 646 O HOH A 663 2.13 REMARK 500 O HOH B 584 O HOH B 605 2.13 REMARK 500 NH2 ARG A 153 O HOH A 504 2.14 REMARK 500 NH2 ARG A 117 O PRO A 146 2.15 REMARK 500 OE1 GLN B 7 O HOH B 503 2.16 REMARK 500 OE1 GLU A 185 NH1 ARG A 189 2.16 REMARK 500 OD1 ASP B 314 O HOH B 504 2.18 REMARK 500 O ALA B 288 O HOH B 505 2.18 REMARK 500 NH1 ARG A 275 O HOH A 505 2.19 REMARK 500 OG1 THR B 304 O HOH B 506 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 117 CD ARG A 117 NE -0.116 REMARK 500 GLU B 178 CG GLU B 178 CD 0.101 REMARK 500 GLU B 178 CD GLU B 178 OE1 0.097 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 101 CB - CA - C ANGL. DEV. = -14.6 DEGREES REMARK 500 ARG A 101 CB - CG - CD ANGL. DEV. = -51.5 DEGREES REMARK 500 ARG A 101 CG - CD - NE ANGL. DEV. = 20.3 DEGREES REMARK 500 ARG A 101 CD - NE - CZ ANGL. DEV. = 16.6 DEGREES REMARK 500 ARG A 101 NE - CZ - NH1 ANGL. DEV. = -6.3 DEGREES REMARK 500 ARG A 101 NE - CZ - NH2 ANGL. DEV. = 7.7 DEGREES REMARK 500 ARG A 117 CB - CG - CD ANGL. DEV. = -16.2 DEGREES REMARK 500 ARG A 117 CD - NE - CZ ANGL. DEV. = 15.9 DEGREES REMARK 500 ARG A 117 NE - CZ - NH1 ANGL. DEV. = -6.5 DEGREES REMARK 500 GLU A 178 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 GLU A 185 CB - CA - C ANGL. DEV. = 13.4 DEGREES REMARK 500 GLU A 185 N - CA - CB ANGL. DEV. = -12.9 DEGREES REMARK 500 GLU A 185 CA - CB - CG ANGL. DEV. = 15.1 DEGREES REMARK 500 LEU A 205 CB - CG - CD2 ANGL. DEV. = 12.4 DEGREES REMARK 500 LYS A 248 CA - CB - CG ANGL. DEV. = 18.7 DEGREES REMARK 500 LYS A 248 CB - CG - CD ANGL. DEV. = -23.9 DEGREES REMARK 500 GLU B 178 OE1 - CD - OE2 ANGL. DEV. = 7.3 DEGREES REMARK 500 GLU B 271 CB - CA - C ANGL. DEV. = -13.8 DEGREES REMARK 500 GLU B 271 CA - CB - CG ANGL. DEV. = 20.5 DEGREES REMARK 500 ARG B 275 CB - CG - CD ANGL. DEV. = -20.1 DEGREES REMARK 500 ARG B 275 CD - NE - CZ ANGL. DEV. = 9.2 DEGREES REMARK 500 ARG B 275 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 275 NE - CZ - NH2 ANGL. DEV. = -5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 85 -55.93 -128.83 REMARK 500 TYR A 91 77.59 -106.81 REMARK 500 ASN A 240 63.75 63.95 REMARK 500 HIS A 254 26.89 -154.71 REMARK 500 LEU A 296 91.37 -65.80 REMARK 500 ASP A 325 -173.92 -170.02 REMARK 500 ALA A 361 125.19 -171.05 REMARK 500 VAL B 85 -55.78 -127.94 REMARK 500 TYR B 91 76.47 -101.18 REMARK 500 ASP B 198 -91.71 -120.11 REMARK 500 GLU B 232 79.72 52.39 REMARK 500 ASN B 240 60.04 -158.53 REMARK 500 HIS B 254 32.38 -150.22 REMARK 500 ALA B 291 120.27 -39.81 REMARK 500 LEU B 296 89.93 -65.77 REMARK 500 THR B 360 -50.44 77.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG B 275 CYS B 276 95.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 117 0.13 SIDE CHAIN REMARK 500 GLN A 136 0.08 SIDE CHAIN REMARK 500 GLU A 185 0.11 SIDE CHAIN REMARK 500 ASP A 325 0.08 SIDE CHAIN REMARK 500 ASP B 167 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 670 DISTANCE = 6.14 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 21 SG REMARK 620 2 CYS A 24 SG 107.5 REMARK 620 3 CYS A 76 SG 108.7 118.3 REMARK 620 4 HIS A 79 ND1 113.4 107.3 101.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 84 OD1 REMARK 620 2 HOH A 576 O 87.7 REMARK 620 3 HOH A 599 O 155.1 92.5 REMARK 620 4 HOH A 628 O 90.1 149.3 77.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 21 SG REMARK 620 2 CYS B 24 SG 109.0 REMARK 620 3 CYS B 76 SG 110.9 118.9 REMARK 620 4 HIS B 79 ND1 114.7 111.2 91.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 84 OD1 REMARK 620 2 HOH B 531 O 70.0 REMARK 620 3 HOH B 551 O 76.2 83.5 REMARK 620 4 HOH B 617 O 175.2 107.1 107.6 REMARK 620 N 1 2 3 DBREF 7RWK A 1 384 UNP V4NUN3 V4NUN3_9CAUL 1 384 DBREF 7RWK B 1 384 UNP V4NUN3 V4NUN3_9CAUL 1 384 SEQRES 1 A 384 MET ARG LYS ALA VAL SER GLN ARG ASN LYS LEU ILE LEU SEQRES 2 A 384 TRP THR ARG GLY GLY GLY ARG CYS TYR LEU CYS ASN CYS SEQRES 3 A 384 ALA LEU LEU GLY ASP LEU ILE SER GLY LYS ASP LYS LEU SEQRES 4 A 384 ASN LYS GLY TYR ILE ALA HIS ILE VAL ALA ALA GLU ILE SEQRES 5 A 384 ASP GLY PRO ARG GLY ASP PRO ILE ARG SER PRO LEU LEU SEQRES 6 A 384 CYS ASP ASP VAL GLU ASN LEU ILE LEU LEU CYS ASP ALA SEQRES 7 A 384 HIS HIS ARG LEU ILE ASP VAL GLU ALA VAL ALA GLU TYR SEQRES 8 A 384 SER GLU PRO ARG LEU GLN GLN ILE LYS ARG ALA HIS GLU SEQRES 9 A 384 ALA ARG VAL GLU ALA VAL THR GLU ILE THR ALA ASP ARG SEQRES 10 A 384 GLY THR HIS MET LEU PHE TYR SER ALA ARG ILE GLY GLU SEQRES 11 A 384 HIS ASP CYS PRO ILE GLN ALA GLN ASP ALA ARG SER ALA SEQRES 12 A 384 VAL LEU PRO ALA TYR TYR PRO LYS ASP ARG HIS PRO ILE SEQRES 13 A 384 ALA LEU ASP VAL ALA ARG SER GLU TYR ALA ASP ASN GLU SEQRES 14 A 384 ALA GLN TYR TRP GLN PHE GLN ILE GLU ASN LEU ASN ARG SEQRES 15 A 384 GLN PHE GLU ARG LYS VAL ARG PRO LEU LEU ALA ASP GLY SEQRES 16 A 384 HIS ILE ASP HIS LEU SER VAL PHE GLY LEU ALA PRO GLN SEQRES 17 A 384 PRO LEU LEU ILE HIS LEU GLY ARG LEU LEU SER ASP LEU SEQRES 18 A 384 ARG LYS VAL ARG VAL HIS GLN LEU HIS ARG GLU PRO LYS SEQRES 19 A 384 GLY TRP ASP TRP ARG ASN GLU ARG PRO PRO VAL VAL TYR SEQRES 20 A 384 LYS THR ASP ARG THR GLY HIS GLY ARG THR ILE ALA LEU SEQRES 21 A 384 LYS ILE GLY ILE SER ALA THR ILE VAL ASP GLU ARG ILE SEQRES 22 A 384 THR ARG CYS LEU GLY GLU ASP THR THR ILE TRP SER LEU SEQRES 23 A 384 SER ALA GLU GLY ALA HIS ASN ASP ILE LEU HIS SER GLU SEQRES 24 A 384 GLY ASP LEU GLN THR PHE ARG SER THR CYS ARG ARG LEU SEQRES 25 A 384 PHE ASP ALA ILE LYS ALA ALA HIS PRO ASP ALA THR ASP SEQRES 26 A 384 LEU HIS ILE PHE PRO ALA MET PRO VAL SER THR ALA ILE SEQRES 27 A 384 GLU LEU GLY ARG ILE TRP MET PRO LYS ALA ASP LEU PRO SEQRES 28 A 384 LEU HIS ILE TYR ASP GLU ASN ARG THR ALA GLY GLY PHE SEQRES 29 A 384 PHE HIS ARG HIS SER LEU GLY GLY VAL SER ILE PRO LYS SEQRES 30 A 384 THR GLU GLU PRO ILE TYR GLY SEQRES 1 B 384 MET ARG LYS ALA VAL SER GLN ARG ASN LYS LEU ILE LEU SEQRES 2 B 384 TRP THR ARG GLY GLY GLY ARG CYS TYR LEU CYS ASN CYS SEQRES 3 B 384 ALA LEU LEU GLY ASP LEU ILE SER GLY LYS ASP LYS LEU SEQRES 4 B 384 ASN LYS GLY TYR ILE ALA HIS ILE VAL ALA ALA GLU ILE SEQRES 5 B 384 ASP GLY PRO ARG GLY ASP PRO ILE ARG SER PRO LEU LEU SEQRES 6 B 384 CYS ASP ASP VAL GLU ASN LEU ILE LEU LEU CYS ASP ALA SEQRES 7 B 384 HIS HIS ARG LEU ILE ASP VAL GLU ALA VAL ALA GLU TYR SEQRES 8 B 384 SER GLU PRO ARG LEU GLN GLN ILE LYS ARG ALA HIS GLU SEQRES 9 B 384 ALA ARG VAL GLU ALA VAL THR GLU ILE THR ALA ASP ARG SEQRES 10 B 384 GLY THR HIS MET LEU PHE TYR SER ALA ARG ILE GLY GLU SEQRES 11 B 384 HIS ASP CYS PRO ILE GLN ALA GLN ASP ALA ARG SER ALA SEQRES 12 B 384 VAL LEU PRO ALA TYR TYR PRO LYS ASP ARG HIS PRO ILE SEQRES 13 B 384 ALA LEU ASP VAL ALA ARG SER GLU TYR ALA ASP ASN GLU SEQRES 14 B 384 ALA GLN TYR TRP GLN PHE GLN ILE GLU ASN LEU ASN ARG SEQRES 15 B 384 GLN PHE GLU ARG LYS VAL ARG PRO LEU LEU ALA ASP GLY SEQRES 16 B 384 HIS ILE ASP HIS LEU SER VAL PHE GLY LEU ALA PRO GLN SEQRES 17 B 384 PRO LEU LEU ILE HIS LEU GLY ARG LEU LEU SER ASP LEU SEQRES 18 B 384 ARG LYS VAL ARG VAL HIS GLN LEU HIS ARG GLU PRO LYS SEQRES 19 B 384 GLY TRP ASP TRP ARG ASN GLU ARG PRO PRO VAL VAL TYR SEQRES 20 B 384 LYS THR ASP ARG THR GLY HIS GLY ARG THR ILE ALA LEU SEQRES 21 B 384 LYS ILE GLY ILE SER ALA THR ILE VAL ASP GLU ARG ILE SEQRES 22 B 384 THR ARG CYS LEU GLY GLU ASP THR THR ILE TRP SER LEU SEQRES 23 B 384 SER ALA GLU GLY ALA HIS ASN ASP ILE LEU HIS SER GLU SEQRES 24 B 384 GLY ASP LEU GLN THR PHE ARG SER THR CYS ARG ARG LEU SEQRES 25 B 384 PHE ASP ALA ILE LYS ALA ALA HIS PRO ASP ALA THR ASP SEQRES 26 B 384 LEU HIS ILE PHE PRO ALA MET PRO VAL SER THR ALA ILE SEQRES 27 B 384 GLU LEU GLY ARG ILE TRP MET PRO LYS ALA ASP LEU PRO SEQRES 28 B 384 LEU HIS ILE TYR ASP GLU ASN ARG THR ALA GLY GLY PHE SEQRES 29 B 384 PHE HIS ARG HIS SER LEU GLY GLY VAL SER ILE PRO LYS SEQRES 30 B 384 THR GLU GLU PRO ILE TYR GLY HET ZN A 401 1 HET MG A 402 1 HET ZN B 401 1 HET MG B 402 1 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION FORMUL 3 ZN 2(ZN 2+) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *361(H2 O) HELIX 1 AA1 SER A 6 GLY A 17 1 12 HELIX 2 AA2 LEU A 28 GLY A 35 1 8 HELIX 3 AA3 ASN A 40 GLY A 42 5 3 HELIX 4 AA4 ILE A 60 CYS A 66 1 7 HELIX 5 AA5 ASP A 68 GLU A 70 5 3 HELIX 6 AA6 CYS A 76 VAL A 85 1 10 HELIX 7 AA7 SER A 92 ILE A 113 1 22 HELIX 8 AA8 GLN A 136 VAL A 144 1 9 HELIX 9 AA9 GLU A 169 VAL A 188 1 20 HELIX 10 AB1 VAL A 188 GLY A 195 1 8 HELIX 11 AB2 PRO A 207 LEU A 218 1 12 HELIX 12 AB3 VAL A 269 LEU A 277 1 9 HELIX 13 AB4 SER A 298 HIS A 320 1 23 HELIX 14 AB5 PRO A 333 TRP A 344 1 12 HELIX 15 AB6 SER B 6 GLY B 17 1 12 HELIX 16 AB7 LEU B 28 SER B 34 1 7 HELIX 17 AB8 ASN B 40 GLY B 42 5 3 HELIX 18 AB9 ILE B 60 CYS B 66 1 7 HELIX 19 AC1 ASP B 68 GLU B 70 5 3 HELIX 20 AC2 CYS B 76 VAL B 85 1 10 HELIX 21 AC3 SER B 92 GLU B 112 1 21 HELIX 22 AC4 THR B 114 ASP B 116 5 3 HELIX 23 AC5 GLN B 136 LEU B 145 1 10 HELIX 24 AC6 GLU B 169 VAL B 188 1 20 HELIX 25 AC7 VAL B 188 ASP B 194 1 7 HELIX 26 AC8 PRO B 207 LEU B 218 1 12 HELIX 27 AC9 VAL B 269 GLY B 278 1 10 HELIX 28 AD1 SER B 298 HIS B 320 1 23 HELIX 29 AD2 PRO B 333 TRP B 344 1 12 SHEET 1 AA1 2 ILE A 44 HIS A 46 0 SHEET 2 AA1 2 LEU A 72 LEU A 74 -1 O ILE A 73 N ALA A 45 SHEET 1 AA2 3 TYR A 149 PRO A 150 0 SHEET 2 AA2 3 GLY A 118 SER A 125 1 N THR A 119 O TYR A 149 SHEET 3 AA2 3 ILE A 156 ASP A 159 1 O ILE A 156 N MET A 121 SHEET 1 AA3 4 TYR A 149 PRO A 150 0 SHEET 2 AA3 4 GLY A 118 SER A 125 1 N THR A 119 O TYR A 149 SHEET 3 AA3 4 LEU A 200 GLY A 204 1 O SER A 201 N HIS A 120 SHEET 4 AA3 4 VAL A 224 VAL A 226 1 O ARG A 225 N VAL A 202 SHEET 1 AA4 6 TYR A 247 GLY A 253 0 SHEET 2 AA4 6 THR A 281 ALA A 288 -1 O ILE A 283 N THR A 252 SHEET 3 AA4 6 THR A 257 GLY A 263 1 N THR A 257 O THR A 282 SHEET 4 AA4 6 LEU A 326 ALA A 331 1 O HIS A 327 N LEU A 260 SHEET 5 AA4 6 LEU A 352 GLU A 357 1 O HIS A 353 N ILE A 328 SHEET 6 AA4 6 PHE A 364 LEU A 370 -1 O HIS A 368 N ILE A 354 SHEET 1 AA5 2 ILE B 44 HIS B 46 0 SHEET 2 AA5 2 LEU B 72 LEU B 74 -1 O ILE B 73 N ALA B 45 SHEET 1 AA6 3 TYR B 149 PRO B 150 0 SHEET 2 AA6 3 GLY B 118 SER B 125 1 N THR B 119 O TYR B 149 SHEET 3 AA6 3 ILE B 156 ASP B 159 1 O LEU B 158 N PHE B 123 SHEET 1 AA7 4 TYR B 149 PRO B 150 0 SHEET 2 AA7 4 GLY B 118 SER B 125 1 N THR B 119 O TYR B 149 SHEET 3 AA7 4 LEU B 200 GLY B 204 1 O SER B 201 N LEU B 122 SHEET 4 AA7 4 VAL B 224 HIS B 227 1 O HIS B 227 N VAL B 202 SHEET 1 AA8 6 TYR B 247 GLY B 253 0 SHEET 2 AA8 6 THR B 281 ALA B 288 -1 O SER B 287 N LYS B 248 SHEET 3 AA8 6 THR B 257 GLY B 263 1 N ALA B 259 O THR B 282 SHEET 4 AA8 6 LEU B 326 ALA B 331 1 O HIS B 327 N LEU B 260 SHEET 5 AA8 6 LEU B 352 GLU B 357 1 O HIS B 353 N ILE B 328 SHEET 6 AA8 6 PHE B 364 LEU B 370 -1 O HIS B 368 N ILE B 354 LINK SG CYS A 21 ZN ZN A 401 1555 1555 2.34 LINK SG CYS A 24 ZN ZN A 401 1555 1555 2.36 LINK SG CYS A 76 ZN ZN A 401 1555 1555 2.29 LINK ND1 HIS A 79 ZN ZN A 401 1555 1555 2.07 LINK OD1 ASP A 84 MG MG A 402 1555 1555 2.05 LINK MG MG A 402 O HOH A 576 1555 1555 2.26 LINK MG MG A 402 O HOH A 599 1555 1555 2.26 LINK MG MG A 402 O HOH A 628 1555 1555 2.32 LINK SG CYS B 21 ZN ZN B 401 1555 1555 2.30 LINK SG CYS B 24 ZN ZN B 401 1555 1555 2.31 LINK SG CYS B 76 ZN ZN B 401 1555 1555 2.35 LINK ND1 HIS B 79 ZN ZN B 401 1555 1555 2.04 LINK OD1 ASP B 84 MG MG B 402 1555 1555 2.37 LINK MG MG B 402 O HOH B 531 1555 1555 2.14 LINK MG MG B 402 O HOH B 551 1555 1555 1.94 LINK MG MG B 402 O HOH B 617 1555 1555 2.24 CISPEP 1 LEU A 145 PRO A 146 0 -2.45 CISPEP 2 GLU A 232 PRO A 233 0 -4.26 CISPEP 3 LEU B 145 PRO B 146 0 -2.54 CISPEP 4 GLU B 232 PRO B 233 0 -11.80 CRYST1 69.311 96.922 131.184 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014428 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010318 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007623 0.00000