data_7RWR # _entry.id 7RWR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7RWR pdb_00007rwr 10.2210/pdb7rwr/pdb WWPDB D_1000257079 ? ? BMRB 30942 ? 10.13018/BMR30942 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-07-20 2 'Structure model' 1 1 2022-09-21 3 'Structure model' 1 2 2022-09-28 4 'Structure model' 1 3 2022-11-02 5 'Structure model' 1 4 2023-06-14 6 'Structure model' 1 5 2024-05-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Database references' 4 5 'Structure model' Other 5 6 'Structure model' 'Data collection' 6 6 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 4 'Structure model' citation 5 4 'Structure model' citation_author 6 5 'Structure model' pdbx_database_status 7 6 'Structure model' chem_comp_atom 8 6 'Structure model' chem_comp_bond 9 6 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.pdbx_database_id_DOI' 6 2 'Structure model' '_citation.title' 7 2 'Structure model' '_citation.year' 8 3 'Structure model' '_citation.pdbx_database_id_PubMed' 9 3 'Structure model' '_citation.title' 10 4 'Structure model' '_citation.journal_volume' 11 4 'Structure model' '_citation.page_first' 12 4 'Structure model' '_citation.page_last' 13 4 'Structure model' '_citation_author.identifier_ORCID' 14 5 'Structure model' '_pdbx_database_status.status_code_nmr_data' 15 6 'Structure model' '_database_2.pdbx_DOI' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 7RWR _pdbx_database_status.recvd_initial_deposition_date 2021-08-20 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs REL _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'An RNA aptamer that decreases flavin redox potential' _pdbx_database_related.db_id 30942 _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Gremminger, T.' 1 0000-0001-5835-4328 'Li, J.' 2 0000-0002-7011-1991 'Chen, S.' 3 0000-0002-8093-7244 'Heng, X.' 4 0000-0001-8448-3596 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Nat.Chem.Biol. _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1552-4469 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 18 _citation.language ? _citation.page_first 1263 _citation.page_last 1269 _citation.title 'An RNA aptamer that shifts the reduction potential of metabolic cofactors.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41589-022-01121-4 _citation.pdbx_database_id_PubMed 36097297 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Samuelian, J.S.' 1 0000-0003-3650-2320 primary 'Gremminger, T.J.' 2 ? primary 'Song, Z.' 3 0000-0002-9679-5113 primary 'Poudyal, R.R.' 4 0000-0001-8911-6867 primary 'Li, J.' 5 0000-0002-7011-1991 primary 'Zhou, Y.' 6 0000-0003-1858-3067 primary 'Staller, S.A.' 7 ? primary 'Carballo, J.A.' 8 ? primary 'Roychowdhury-Saha, M.' 9 0000-0002-2111-8468 primary 'Chen, S.J.' 10 ? primary 'Burke, D.H.' 11 0000-0001-6513-8391 primary 'Heng, X.' 12 ? primary 'Baum, D.A.' 13 0000-0002-2777-1708 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA (38-MER)' 12234.317 1 ? ? ? ? 2 non-polymer syn 'FLAVIN MONONUCLEOTIDE' 456.344 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGAUACACAAGAGUGAUUGAAACUAAGUCUGUGUAUCC _entity_poly.pdbx_seq_one_letter_code_can GGAUACACAAGAGUGAUUGAAACUAAGUCUGUGUAUCC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'FLAVIN MONONUCLEOTIDE' _pdbx_entity_nonpoly.comp_id FMN # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 A n 1 4 U n 1 5 A n 1 6 C n 1 7 A n 1 8 C n 1 9 A n 1 10 A n 1 11 G n 1 12 A n 1 13 G n 1 14 U n 1 15 G n 1 16 A n 1 17 U n 1 18 U n 1 19 G n 1 20 A n 1 21 A n 1 22 A n 1 23 C n 1 24 U n 1 25 A n 1 26 A n 1 27 G n 1 28 U n 1 29 C n 1 30 U n 1 31 G n 1 32 U n 1 33 G n 1 34 U n 1 35 A n 1 36 U n 1 37 C n 1 38 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 38 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 FMN non-polymer . 'FLAVIN MONONUCLEOTIDE' 'RIBOFLAVIN MONOPHOSPHATE' 'C17 H21 N4 O9 P' 456.344 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 A 3 3 3 A A A . n A 1 4 U 4 4 4 U U A . n A 1 5 A 5 5 5 A A A . n A 1 6 C 6 6 6 C C A . n A 1 7 A 7 7 7 A A A . n A 1 8 C 8 8 8 C C A . n A 1 9 A 9 9 9 A A A . n A 1 10 A 10 10 10 A A A . n A 1 11 G 11 11 11 G G A . n A 1 12 A 12 12 12 A A A . n A 1 13 G 13 13 13 G G A . n A 1 14 U 14 14 14 U U A . n A 1 15 G 15 15 15 G G A . n A 1 16 A 16 16 16 A A A . n A 1 17 U 17 17 17 U U A . n A 1 18 U 18 18 18 U U A . n A 1 19 G 19 19 19 G G A . n A 1 20 A 20 20 20 A A A . n A 1 21 A 21 21 21 A A A . n A 1 22 A 22 22 22 A A A . n A 1 23 C 23 23 23 C C A . n A 1 24 U 24 24 24 U U A . n A 1 25 A 25 25 25 A A A . n A 1 26 A 26 26 26 A A A . n A 1 27 G 27 27 27 G G A . n A 1 28 U 28 28 28 U U A . n A 1 29 C 29 29 29 C C A . n A 1 30 U 30 30 30 U U A . n A 1 31 G 31 31 31 G G A . n A 1 32 U 32 32 32 U U A . n A 1 33 G 33 33 33 G G A . n A 1 34 U 34 34 34 U U A . n A 1 35 A 35 35 35 A A A . n A 1 36 U 36 36 36 U U A . n A 1 37 C 37 37 37 C C A . n A 1 38 C 38 38 38 C C A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id FMN _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 39 _pdbx_nonpoly_scheme.pdb_mon_id FMN _pdbx_nonpoly_scheme.auth_mon_id FMN _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7RWR _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 7RWR _struct.title 'An RNA aptamer that decreases flavin redox potential' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7RWR _struct_keywords.text 'RNA aptamer, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7RWR _struct_ref.pdbx_db_accession 7RWR _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7RWR _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 38 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 7RWR _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 38 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 38 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'isothermal titration calorimetry' _pdbx_struct_assembly_auth_evidence.details 'Kd=191 +/- 66 nM' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 38 N3 ? ? A G 1 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 38 O2 ? ? A G 1 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 38 N4 ? ? A G 1 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 37 N3 ? ? A G 2 A C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 37 O2 ? ? A G 2 A C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 37 N4 ? ? A G 2 A C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 36 N3 ? ? A A 3 A U 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 36 O4 ? ? A A 3 A U 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 4 N3 ? ? ? 1_555 A A 35 N1 ? ? A U 4 A A 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 4 O4 ? ? ? 1_555 A A 35 N6 ? ? A U 4 A A 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A A 5 N1 ? ? ? 1_555 A U 34 N3 ? ? A A 5 A U 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A A 5 N6 ? ? ? 1_555 A U 34 O4 ? ? A A 5 A U 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 6 N3 ? ? ? 1_555 A G 33 N1 ? ? A C 6 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 6 N4 ? ? ? 1_555 A G 33 O6 ? ? A C 6 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 33 N2 ? ? A C 6 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 7 N1 ? ? ? 1_555 A U 32 N3 ? ? A A 7 A U 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A A 7 N6 ? ? ? 1_555 A U 32 O4 ? ? A A 7 A U 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 8 N3 ? ? ? 1_555 A G 31 N1 ? ? A C 8 A G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 8 N4 ? ? ? 1_555 A G 31 O6 ? ? A C 8 A G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 8 O2 ? ? ? 1_555 A G 31 N2 ? ? A C 8 A G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A A 10 N1 ? ? ? 1_555 A U 30 N3 ? ? A A 10 A U 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A A 10 N6 ? ? ? 1_555 A U 30 O4 ? ? A A 10 A U 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 11 O6 ? ? ? 1_555 A C 23 N4 ? ? A G 11 A C 23 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog24 hydrog ? ? A G 11 N1 ? ? ? 1_555 A C 29 N3 ? ? A G 11 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 11 N2 ? ? ? 1_555 A C 29 O2 ? ? A G 11 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 11 O6 ? ? ? 1_555 A C 29 N4 ? ? A G 11 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A A 12 N1 ? ? ? 1_555 A U 28 N3 ? ? A A 12 A U 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A A 12 N6 ? ? ? 1_555 A U 28 O4 ? ? A A 12 A U 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 13 N1 ? ? ? 1_555 A G 27 O6 ? ? A G 13 A G 27 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog30 hydrog ? ? A G 13 N2 ? ? ? 1_555 A G 27 N7 ? ? A G 13 A G 27 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog31 hydrog ? ? A U 18 N3 ? ? ? 1_555 A A 26 N7 ? ? A U 18 A A 26 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog32 hydrog ? ? A U 18 O4 ? ? ? 1_555 A A 26 N6 ? ? A U 18 A A 26 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog33 hydrog ? ? A A 22 N6 ? ? ? 1_555 A U 28 O4 ? ? A A 22 A U 28 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 2 "HO2'" A A 25 ? ? OP1 A A 26 ? ? 1.59 2 3 "HO2'" A A 25 ? ? OP1 A A 26 ? ? 1.60 3 6 "HO2'" A A 25 ? ? OP1 A A 26 ? ? 1.59 4 8 "HO2'" A A 25 ? ? OP1 A A 26 ? ? 1.59 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 2 "C3'" A C 23 ? ? "C2'" A C 23 ? ? "C1'" A C 23 ? ? 96.88 101.30 -4.42 0.70 N 2 2 N1 A C 23 ? ? "C1'" A C 23 ? ? "C2'" A C 23 ? ? 121.90 114.00 7.90 1.30 N 3 2 "O4'" A A 26 ? ? "C1'" A A 26 ? ? "C2'" A A 26 ? ? 99.68 105.80 -6.12 1.00 N 4 3 "C5'" A G 19 ? ? "C4'" A G 19 ? ? "O4'" A G 19 ? ? 115.82 109.80 6.02 0.90 N 5 3 "C5'" A G 31 ? ? "C4'" A G 31 ? ? "O4'" A G 31 ? ? 116.48 109.80 6.68 0.90 N 6 4 "C5'" A G 31 ? ? "C4'" A G 31 ? ? "O4'" A G 31 ? ? 116.61 109.80 6.81 0.90 N 7 5 "O4'" A A 26 ? ? "C1'" A A 26 ? ? "C2'" A A 26 ? ? 99.23 105.80 -6.57 1.00 N 8 5 "C5'" A G 31 ? ? "C4'" A G 31 ? ? "O4'" A G 31 ? ? 115.63 109.80 5.83 0.90 N 9 6 "C3'" A C 8 ? ? "C2'" A C 8 ? ? "C1'" A C 8 ? ? 106.34 101.50 4.84 0.80 N 10 6 "C5'" A A 9 ? ? "C4'" A A 9 ? ? "O4'" A A 9 ? ? 115.98 109.80 6.18 0.90 N 11 6 "C5'" A G 15 ? ? "C4'" A G 15 ? ? "O4'" A G 15 ? ? 115.97 109.80 6.17 0.90 N 12 7 "C1'" A U 17 ? ? "O4'" A U 17 ? ? "C4'" A U 17 ? ? 104.05 109.70 -5.65 0.70 N 13 7 "O4'" A A 26 ? ? "C1'" A A 26 ? ? "C2'" A A 26 ? ? 98.23 105.80 -7.57 1.00 N 14 8 "C5'" A G 19 ? ? "C4'" A G 19 ? ? "O4'" A G 19 ? ? 115.44 109.80 5.64 0.90 N 15 8 "O4'" A A 20 ? ? "C1'" A A 20 ? ? "C2'" A A 20 ? ? 99.11 105.80 -6.69 1.00 N 16 8 "O4'" A A 25 ? ? "C1'" A A 25 ? ? "C2'" A A 25 ? ? 99.68 105.80 -6.12 1.00 N 17 8 "C5'" A G 31 ? ? "C4'" A G 31 ? ? "O4'" A G 31 ? ? 115.63 109.80 5.83 0.90 N 18 9 "C1'" A U 14 ? ? "O4'" A U 14 ? ? "C4'" A U 14 ? ? 103.51 109.70 -6.19 0.70 N 19 9 "C1'" A U 18 ? ? "O4'" A U 18 ? ? "C4'" A U 18 ? ? 104.83 109.70 -4.87 0.70 N 20 9 "C1'" A C 23 ? ? "O4'" A C 23 ? ? "C4'" A C 23 ? ? 103.33 109.70 -6.37 0.70 N 21 9 N1 A C 23 ? ? "C1'" A C 23 ? ? "C2'" A C 23 ? ? 122.94 114.00 8.94 1.30 N 22 9 "O4'" A A 26 ? ? "C1'" A A 26 ? ? "C2'" A A 26 ? ? 98.20 105.80 -7.60 1.00 N 23 9 "C5'" A G 31 ? ? "C4'" A G 31 ? ? "O4'" A G 31 ? ? 115.33 109.80 5.53 0.90 N 24 10 "C5'" A G 19 ? ? "C4'" A G 19 ? ? "O4'" A G 19 ? ? 115.31 109.80 5.51 0.90 N 25 10 "O4'" A G 19 ? ? "C1'" A G 19 ? ? N9 A G 19 ? ? 114.13 108.50 5.63 0.70 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 A A 12 ? ? 0.074 'SIDE CHAIN' 2 1 G A 13 ? ? 0.071 'SIDE CHAIN' 3 1 U A 14 ? ? 0.065 'SIDE CHAIN' 4 1 G A 15 ? ? 0.082 'SIDE CHAIN' 5 1 U A 18 ? ? 0.142 'SIDE CHAIN' 6 1 A A 20 ? ? 0.074 'SIDE CHAIN' 7 1 C A 23 ? ? 0.094 'SIDE CHAIN' 8 1 G A 27 ? ? 0.068 'SIDE CHAIN' 9 1 C A 29 ? ? 0.058 'SIDE CHAIN' 10 1 U A 30 ? ? 0.073 'SIDE CHAIN' 11 2 A A 12 ? ? 0.078 'SIDE CHAIN' 12 2 G A 13 ? ? 0.060 'SIDE CHAIN' 13 2 G A 15 ? ? 0.073 'SIDE CHAIN' 14 2 A A 22 ? ? 0.069 'SIDE CHAIN' 15 2 U A 24 ? ? 0.080 'SIDE CHAIN' 16 2 A A 26 ? ? 0.081 'SIDE CHAIN' 17 2 C A 29 ? ? 0.067 'SIDE CHAIN' 18 2 C A 37 ? ? 0.057 'SIDE CHAIN' 19 3 A A 12 ? ? 0.098 'SIDE CHAIN' 20 3 G A 15 ? ? 0.089 'SIDE CHAIN' 21 3 U A 18 ? ? 0.068 'SIDE CHAIN' 22 3 A A 22 ? ? 0.062 'SIDE CHAIN' 23 3 C A 23 ? ? 0.097 'SIDE CHAIN' 24 3 A A 26 ? ? 0.095 'SIDE CHAIN' 25 3 C A 29 ? ? 0.079 'SIDE CHAIN' 26 3 U A 30 ? ? 0.073 'SIDE CHAIN' 27 3 C A 37 ? ? 0.073 'SIDE CHAIN' 28 3 C A 38 ? ? 0.067 'SIDE CHAIN' 29 4 G A 13 ? ? 0.094 'SIDE CHAIN' 30 4 G A 15 ? ? 0.098 'SIDE CHAIN' 31 4 U A 18 ? ? 0.119 'SIDE CHAIN' 32 4 C A 23 ? ? 0.059 'SIDE CHAIN' 33 4 A A 26 ? ? 0.117 'SIDE CHAIN' 34 4 C A 29 ? ? 0.069 'SIDE CHAIN' 35 4 U A 30 ? ? 0.105 'SIDE CHAIN' 36 5 A A 12 ? ? 0.066 'SIDE CHAIN' 37 5 G A 13 ? ? 0.075 'SIDE CHAIN' 38 5 U A 14 ? ? 0.065 'SIDE CHAIN' 39 5 G A 15 ? ? 0.064 'SIDE CHAIN' 40 5 A A 16 ? ? 0.052 'SIDE CHAIN' 41 5 C A 23 ? ? 0.126 'SIDE CHAIN' 42 5 U A 24 ? ? 0.075 'SIDE CHAIN' 43 5 G A 27 ? ? 0.053 'SIDE CHAIN' 44 5 C A 29 ? ? 0.059 'SIDE CHAIN' 45 5 U A 30 ? ? 0.105 'SIDE CHAIN' 46 5 C A 38 ? ? 0.065 'SIDE CHAIN' 47 6 A A 12 ? ? 0.054 'SIDE CHAIN' 48 6 G A 13 ? ? 0.080 'SIDE CHAIN' 49 6 G A 15 ? ? 0.094 'SIDE CHAIN' 50 6 C A 23 ? ? 0.094 'SIDE CHAIN' 51 6 A A 26 ? ? 0.090 'SIDE CHAIN' 52 6 U A 28 ? ? 0.076 'SIDE CHAIN' 53 6 C A 29 ? ? 0.062 'SIDE CHAIN' 54 6 U A 30 ? ? 0.089 'SIDE CHAIN' 55 6 C A 37 ? ? 0.064 'SIDE CHAIN' 56 7 A A 12 ? ? 0.061 'SIDE CHAIN' 57 7 G A 13 ? ? 0.067 'SIDE CHAIN' 58 7 G A 15 ? ? 0.087 'SIDE CHAIN' 59 7 A A 26 ? ? 0.096 'SIDE CHAIN' 60 7 C A 29 ? ? 0.065 'SIDE CHAIN' 61 7 U A 30 ? ? 0.091 'SIDE CHAIN' 62 8 A A 12 ? ? 0.058 'SIDE CHAIN' 63 8 G A 13 ? ? 0.086 'SIDE CHAIN' 64 8 U A 14 ? ? 0.093 'SIDE CHAIN' 65 8 G A 15 ? ? 0.082 'SIDE CHAIN' 66 8 A A 25 ? ? 0.077 'SIDE CHAIN' 67 8 A A 26 ? ? 0.062 'SIDE CHAIN' 68 8 U A 30 ? ? 0.082 'SIDE CHAIN' 69 9 U A 14 ? ? 0.101 'SIDE CHAIN' 70 9 G A 15 ? ? 0.053 'SIDE CHAIN' 71 9 U A 18 ? ? 0.120 'SIDE CHAIN' 72 9 C A 23 ? ? 0.082 'SIDE CHAIN' 73 9 A A 26 ? ? 0.126 'SIDE CHAIN' 74 9 U A 30 ? ? 0.076 'SIDE CHAIN' 75 9 C A 37 ? ? 0.066 'SIDE CHAIN' 76 10 A A 12 ? ? 0.069 'SIDE CHAIN' 77 10 G A 13 ? ? 0.092 'SIDE CHAIN' 78 10 G A 15 ? ? 0.061 'SIDE CHAIN' 79 10 A A 22 ? ? 0.054 'SIDE CHAIN' 80 10 C A 23 ? ? 0.117 'SIDE CHAIN' 81 10 A A 26 ? ? 0.069 'SIDE CHAIN' 82 10 U A 30 ? ? 0.075 'SIDE CHAIN' # _pdbx_entry_details.entry_id 7RWR _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y # _pdbx_nmr_ensemble.entry_id 7RWR _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 7RWR _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 '300 uM U-1H RNA (38-MER), 300 uM U-1H FMN, 100% D2O' '100% D2O' Tx041-FMN solution ? 2 '300 uM A-H, C-D, G-H, U-D RNA (38-MER), 300 uM U-1H FMN, 100% D2O' '100% D2O' AG-Tx041-FMN solution ? 3 '300 uM A-H, C-H, G-D, U-D RNA (38-MER), 300 uM U-1H FMN, 100% D2O' '100% D2O' AC-Tx041-FMN solution ? 4 '300 uM A-D, C-D, G-H, U-H RNA (38-MER), 300 uM U-H FMN, 100% D2O' '100% D2O' GU-Tx041-FMN solution ? 5 '300 uM A-8D, C-H, G-H, U-5,6D2 RNA (38-MER), 300 uM U-1H FMN, 100% D2O' '100% D2O' A2rUrGC-Tx041-FMN solution ? 6 '300 uM [U-100% 13C; U-100% 15N] RNA (38-MER), 300 uM U-1H FMN, 90% H2O/10% D2O' '90% H2O/10% D2O' 13C/15N-Tx041-FMN solution ? 7 '300 uM [U-100% 13C; U-100% 15N] RNA (38-MER), 300 uM dioxopyrimidine-13C4, 15N2 FMN, 90% H2O/10% D2O' '90% H2O/10% D2O' 13C/15N-Tx041-13C/15N-FMN solution ? # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'RNA (38-MER)' 300 ? uM U-1H 1 FMN 300 ? uM U-1H 2 'RNA (38-MER)' 300 ? uM 'A-H, C-D, G-H, U-D' 2 FMN 300 ? uM U-1H 3 'RNA (38-MER)' 300 ? uM 'A-H, C-H, G-D, U-D' 3 FMN 300 ? uM U-1H 4 'RNA (38-MER)' 300 ? uM 'A-D, C-D, G-H, U-H' 4 FMN 300 ? uM U-H 5 'RNA (38-MER)' 300 ? uM 'A-8D, C-H, G-H, U-5,6D2' 5 FMN 300 ? uM U-1H 6 'RNA (38-MER)' 300 ? uM '[U-100% 13C; U-100% 15N]' 6 FMN 300 ? uM U-1H 7 'RNA (38-MER)' 300 ? uM '[U-100% 13C; U-100% 15N]' 7 FMN 300 ? uM 'dioxopyrimidine-13C4, 15N2' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.details _pdbx_nmr_exptl_sample_conditions.ionic_strength_err _pdbx_nmr_exptl_sample_conditions.ionic_strength_units _pdbx_nmr_exptl_sample_conditions.label _pdbx_nmr_exptl_sample_conditions.pH_err _pdbx_nmr_exptl_sample_conditions.pH_units _pdbx_nmr_exptl_sample_conditions.pressure_err _pdbx_nmr_exptl_sample_conditions.temperature_err _pdbx_nmr_exptl_sample_conditions.temperature_units 1 308 atm 1 7.5 '20 mM MgCl2' ? ? mM 308K ? pH ? ? K 2 283 atm 1 6.5 '20 mM MgCl2' ? ? mM 283K ? pH ? ? K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H NOESY' 1 isotropic 2 1 2 '2D 1H-1H NOESY' 1 isotropic 3 1 3 '2D 1H-1H NOESY' 1 isotropic 4 1 4 '2D 1H-1H NOESY' 1 isotropic 5 1 5 '2D 1H-1H NOESY' 1 isotropic 6 1 1 '2D 1H-1H COSY' 1 isotropic 7 2 6 HNN-COSY 1 isotropic 10 2 7 HNN-COSY 1 isotropic 8 1 6 F1fF2f-NOESY 1 isotropic 9 1 6 F2f-NOESY 1 isotropic # _pdbx_nmr_refine.entry_id 7RWR _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 7 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 processing NMRPipe ? 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' 2 processing NMRDraw ? 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' 3 'chemical shift assignment' NMRViewJ ? Johnson 4 'peak picking' NMRViewJ ? Johnson 5 'structure calculation' CYANA ? 'Guntert, Mumenthaler and Wuthrich' 6 'geometry optimization' CYANA ? 'Guntert, Mumenthaler and Wuthrich' 7 refinement Amber ? 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, and Kollman' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 FMN N1 N N N 73 FMN C2 C N N 74 FMN O2 O N N 75 FMN N3 N N N 76 FMN C4 C N N 77 FMN O4 O N N 78 FMN C4A C N N 79 FMN N5 N N N 80 FMN C5A C Y N 81 FMN C6 C Y N 82 FMN C7 C Y N 83 FMN C7M C N N 84 FMN C8 C Y N 85 FMN C8M C N N 86 FMN C9 C Y N 87 FMN C9A C Y N 88 FMN N10 N N N 89 FMN C10 C N N 90 FMN "C1'" C N N 91 FMN "C2'" C N S 92 FMN "O2'" O N N 93 FMN "C3'" C N S 94 FMN "O3'" O N N 95 FMN "C4'" C N R 96 FMN "O4'" O N N 97 FMN "C5'" C N N 98 FMN "O5'" O N N 99 FMN P P N N 100 FMN O1P O N N 101 FMN O2P O N N 102 FMN O3P O N N 103 FMN HN3 H N N 104 FMN H6 H N N 105 FMN HM71 H N N 106 FMN HM72 H N N 107 FMN HM73 H N N 108 FMN HM81 H N N 109 FMN HM82 H N N 110 FMN HM83 H N N 111 FMN H9 H N N 112 FMN "H1'1" H N N 113 FMN "H1'2" H N N 114 FMN "H2'" H N N 115 FMN "HO2'" H N N 116 FMN "H3'" H N N 117 FMN "HO3'" H N N 118 FMN "H4'" H N N 119 FMN "HO4'" H N N 120 FMN "H5'1" H N N 121 FMN "H5'2" H N N 122 FMN HOP2 H N N 123 FMN HOP3 H N N 124 G OP3 O N N 125 G P P N N 126 G OP1 O N N 127 G OP2 O N N 128 G "O5'" O N N 129 G "C5'" C N N 130 G "C4'" C N R 131 G "O4'" O N N 132 G "C3'" C N S 133 G "O3'" O N N 134 G "C2'" C N R 135 G "O2'" O N N 136 G "C1'" C N R 137 G N9 N Y N 138 G C8 C Y N 139 G N7 N Y N 140 G C5 C Y N 141 G C6 C N N 142 G O6 O N N 143 G N1 N N N 144 G C2 C N N 145 G N2 N N N 146 G N3 N N N 147 G C4 C Y N 148 G HOP3 H N N 149 G HOP2 H N N 150 G "H5'" H N N 151 G "H5''" H N N 152 G "H4'" H N N 153 G "H3'" H N N 154 G "HO3'" H N N 155 G "H2'" H N N 156 G "HO2'" H N N 157 G "H1'" H N N 158 G H8 H N N 159 G H1 H N N 160 G H21 H N N 161 G H22 H N N 162 U OP3 O N N 163 U P P N N 164 U OP1 O N N 165 U OP2 O N N 166 U "O5'" O N N 167 U "C5'" C N N 168 U "C4'" C N R 169 U "O4'" O N N 170 U "C3'" C N S 171 U "O3'" O N N 172 U "C2'" C N R 173 U "O2'" O N N 174 U "C1'" C N R 175 U N1 N N N 176 U C2 C N N 177 U O2 O N N 178 U N3 N N N 179 U C4 C N N 180 U O4 O N N 181 U C5 C N N 182 U C6 C N N 183 U HOP3 H N N 184 U HOP2 H N N 185 U "H5'" H N N 186 U "H5''" H N N 187 U "H4'" H N N 188 U "H3'" H N N 189 U "HO3'" H N N 190 U "H2'" H N N 191 U "HO2'" H N N 192 U "H1'" H N N 193 U H3 H N N 194 U H5 H N N 195 U H6 H N N 196 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 FMN N1 C2 sing N N 76 FMN N1 C10 doub N N 77 FMN C2 O2 doub N N 78 FMN C2 N3 sing N N 79 FMN N3 C4 sing N N 80 FMN N3 HN3 sing N N 81 FMN C4 O4 doub N N 82 FMN C4 C4A sing N N 83 FMN C4A N5 doub N N 84 FMN C4A C10 sing N N 85 FMN N5 C5A sing N N 86 FMN C5A C6 doub Y N 87 FMN C5A C9A sing Y N 88 FMN C6 C7 sing Y N 89 FMN C6 H6 sing N N 90 FMN C7 C7M sing N N 91 FMN C7 C8 doub Y N 92 FMN C7M HM71 sing N N 93 FMN C7M HM72 sing N N 94 FMN C7M HM73 sing N N 95 FMN C8 C8M sing N N 96 FMN C8 C9 sing Y N 97 FMN C8M HM81 sing N N 98 FMN C8M HM82 sing N N 99 FMN C8M HM83 sing N N 100 FMN C9 C9A doub Y N 101 FMN C9 H9 sing N N 102 FMN C9A N10 sing N N 103 FMN N10 C10 sing N N 104 FMN N10 "C1'" sing N N 105 FMN "C1'" "C2'" sing N N 106 FMN "C1'" "H1'1" sing N N 107 FMN "C1'" "H1'2" sing N N 108 FMN "C2'" "O2'" sing N N 109 FMN "C2'" "C3'" sing N N 110 FMN "C2'" "H2'" sing N N 111 FMN "O2'" "HO2'" sing N N 112 FMN "C3'" "O3'" sing N N 113 FMN "C3'" "C4'" sing N N 114 FMN "C3'" "H3'" sing N N 115 FMN "O3'" "HO3'" sing N N 116 FMN "C4'" "O4'" sing N N 117 FMN "C4'" "C5'" sing N N 118 FMN "C4'" "H4'" sing N N 119 FMN "O4'" "HO4'" sing N N 120 FMN "C5'" "O5'" sing N N 121 FMN "C5'" "H5'1" sing N N 122 FMN "C5'" "H5'2" sing N N 123 FMN "O5'" P sing N N 124 FMN P O1P doub N N 125 FMN P O2P sing N N 126 FMN P O3P sing N N 127 FMN O2P HOP2 sing N N 128 FMN O3P HOP3 sing N N 129 G OP3 P sing N N 130 G OP3 HOP3 sing N N 131 G P OP1 doub N N 132 G P OP2 sing N N 133 G P "O5'" sing N N 134 G OP2 HOP2 sing N N 135 G "O5'" "C5'" sing N N 136 G "C5'" "C4'" sing N N 137 G "C5'" "H5'" sing N N 138 G "C5'" "H5''" sing N N 139 G "C4'" "O4'" sing N N 140 G "C4'" "C3'" sing N N 141 G "C4'" "H4'" sing N N 142 G "O4'" "C1'" sing N N 143 G "C3'" "O3'" sing N N 144 G "C3'" "C2'" sing N N 145 G "C3'" "H3'" sing N N 146 G "O3'" "HO3'" sing N N 147 G "C2'" "O2'" sing N N 148 G "C2'" "C1'" sing N N 149 G "C2'" "H2'" sing N N 150 G "O2'" "HO2'" sing N N 151 G "C1'" N9 sing N N 152 G "C1'" "H1'" sing N N 153 G N9 C8 sing Y N 154 G N9 C4 sing Y N 155 G C8 N7 doub Y N 156 G C8 H8 sing N N 157 G N7 C5 sing Y N 158 G C5 C6 sing N N 159 G C5 C4 doub Y N 160 G C6 O6 doub N N 161 G C6 N1 sing N N 162 G N1 C2 sing N N 163 G N1 H1 sing N N 164 G C2 N2 sing N N 165 G C2 N3 doub N N 166 G N2 H21 sing N N 167 G N2 H22 sing N N 168 G N3 C4 sing N N 169 U OP3 P sing N N 170 U OP3 HOP3 sing N N 171 U P OP1 doub N N 172 U P OP2 sing N N 173 U P "O5'" sing N N 174 U OP2 HOP2 sing N N 175 U "O5'" "C5'" sing N N 176 U "C5'" "C4'" sing N N 177 U "C5'" "H5'" sing N N 178 U "C5'" "H5''" sing N N 179 U "C4'" "O4'" sing N N 180 U "C4'" "C3'" sing N N 181 U "C4'" "H4'" sing N N 182 U "O4'" "C1'" sing N N 183 U "C3'" "O3'" sing N N 184 U "C3'" "C2'" sing N N 185 U "C3'" "H3'" sing N N 186 U "O3'" "HO3'" sing N N 187 U "C2'" "O2'" sing N N 188 U "C2'" "C1'" sing N N 189 U "C2'" "H2'" sing N N 190 U "O2'" "HO2'" sing N N 191 U "C1'" N1 sing N N 192 U "C1'" "H1'" sing N N 193 U N1 C2 sing N N 194 U N1 C6 sing N N 195 U C2 O2 doub N N 196 U C2 N3 sing N N 197 U N3 C4 sing N N 198 U N3 H3 sing N N 199 U C4 O4 doub N N 200 U C4 C5 sing N N 201 U C5 C6 doub N N 202 U C5 H5 sing N N 203 U C6 H6 sing N N 204 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 7RWR 'double helix' 7RWR 'a-form double helix' 7RWR 'hairpin loop' 7RWR 'bulge loop' 7RWR 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 38 1_555 -0.111 -0.093 -0.250 -8.809 5.441 -2.294 1 A_G1:C38_A A 1 ? A 38 ? 19 1 1 A G 2 1_555 A C 37 1_555 0.062 -0.050 -0.340 -15.272 -2.752 -2.215 2 A_G2:C37_A A 2 ? A 37 ? 19 1 1 A A 3 1_555 A U 36 1_555 -0.147 -0.049 -0.370 -19.317 -14.027 -1.136 3 A_A3:U36_A A 3 ? A 36 ? 20 1 1 A U 4 1_555 A A 35 1_555 -0.059 -0.050 0.576 -17.526 -4.009 -1.637 4 A_U4:A35_A A 4 ? A 35 ? 20 1 1 A A 5 1_555 A U 34 1_555 0.186 -0.044 0.449 5.828 -0.952 -4.634 5 A_A5:U34_A A 5 ? A 34 ? 20 1 1 A C 6 1_555 A G 33 1_555 0.108 -0.088 -0.080 8.980 -9.529 -0.504 6 A_C6:G33_A A 6 ? A 33 ? 19 1 1 A A 7 1_555 A U 32 1_555 0.320 -0.086 -0.067 8.991 -15.080 -0.808 7 A_A7:U32_A A 7 ? A 32 ? 20 1 1 A C 8 1_555 A G 31 1_555 0.198 -0.141 0.067 -4.002 -18.830 -0.605 8 A_C8:G31_A A 8 ? A 31 ? 19 1 1 A A 10 1_555 A U 30 1_555 -0.087 -0.044 -0.321 -18.619 -3.220 -2.469 9 A_A10:U30_A A 10 ? A 30 ? 20 1 1 A G 11 1_555 A C 29 1_555 -0.438 -0.180 -0.003 -4.822 -0.511 -1.053 10 A_G11:C29_A A 11 ? A 29 ? 19 1 1 A A 12 1_555 A U 28 1_555 -0.421 -0.138 0.069 -6.031 -5.511 -1.275 11 A_A12:U28_A A 12 ? A 28 ? 20 1 1 A G 13 1_555 A G 27 1_555 1.403 3.996 -0.852 30.575 3.704 -83.615 12 A_G13:G27_A A 13 ? A 27 ? 6 3 1 A U 18 1_555 A A 26 1_555 -1.711 4.145 -0.140 7.348 -9.043 -88.756 13 A_U18:A26_A A 18 ? A 26 ? 23 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 38 1_555 A G 2 1_555 A C 37 1_555 0.221 -1.580 3.627 1.400 16.283 29.516 -5.373 -0.155 2.454 29.302 -2.519 33.650 1 AA_G1G2:C37C38_AA A 1 ? A 38 ? A 2 ? A 37 ? 1 A G 2 1_555 A C 37 1_555 A A 3 1_555 A U 36 1_555 0.443 -1.196 3.511 1.268 17.194 34.123 -4.005 -0.518 2.646 27.252 -2.010 38.116 2 AA_G2A3:U36C37_AA A 2 ? A 37 ? A 3 ? A 36 ? 1 A A 3 1_555 A U 36 1_555 A U 4 1_555 A A 35 1_555 0.346 -1.234 3.429 -4.014 15.191 29.857 -4.508 -1.225 2.466 27.239 7.197 33.656 3 AA_A3U4:A35U36_AA A 3 ? A 36 ? A 4 ? A 35 ? 1 A U 4 1_555 A A 35 1_555 A A 5 1_555 A U 34 1_555 -0.242 -1.410 2.670 0.301 2.606 30.543 -3.076 0.505 2.542 4.935 -0.570 30.652 4 AA_U4A5:U34A35_AA A 4 ? A 35 ? A 5 ? A 34 ? 1 A A 5 1_555 A U 34 1_555 A C 6 1_555 A G 33 1_555 -0.060 -1.427 3.425 2.328 7.883 26.880 -4.769 0.663 2.882 16.475 -4.865 28.086 5 AA_A5C6:G33U34_AA A 5 ? A 34 ? A 6 ? A 33 ? 1 A C 6 1_555 A G 33 1_555 A A 7 1_555 A U 32 1_555 -0.112 -1.211 3.327 -2.261 12.686 34.900 -3.526 -0.114 2.740 20.316 3.621 37.133 6 AA_C6A7:U32G33_AA A 6 ? A 33 ? A 7 ? A 32 ? 1 A A 7 1_555 A U 32 1_555 A C 8 1_555 A G 31 1_555 0.364 -1.842 3.698 2.278 9.395 33.142 -4.653 -0.238 3.093 16.050 -3.891 34.485 7 AA_A7C8:G31U32_AA A 7 ? A 32 ? A 8 ? A 31 ? 1 A C 8 1_555 A G 31 1_555 A A 10 1_555 A U 30 1_555 -3.132 -3.404 5.750 18.113 18.904 42.761 -5.976 5.572 2.661 23.489 -22.507 49.817 8 AA_C8A10:U30G31_AA A 8 ? A 31 ? A 10 ? A 30 ? 1 A A 10 1_555 A U 30 1_555 A G 11 1_555 A C 29 1_555 0.056 -0.784 3.199 -1.476 8.577 23.893 -4.098 -0.526 2.747 19.891 3.422 25.407 9 AA_A10G11:C29U30_AA A 10 ? A 30 ? A 11 ? A 29 ? 1 A G 11 1_555 A C 29 1_555 A A 12 1_555 A U 28 1_555 0.269 -0.969 3.624 0.100 16.307 33.826 -3.754 -0.405 2.876 26.220 -0.160 37.448 10 AA_G11A12:U28C29_AA A 11 ? A 29 ? A 12 ? A 28 ? 1 A A 12 1_555 A U 28 1_555 A G 13 1_555 A G 27 1_555 1.201 -2.810 3.575 -4.018 -2.762 78.517 -2.133 -1.069 3.601 -2.180 3.172 78.643 11 AA_A12G13:G27U28_AA A 12 ? A 28 ? A 13 ? A 27 ? # _pdbx_audit_support.funding_organization 'National Aeronautic Space Administration (NASA, United States)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number NNX17AE88G _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id FMN _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id FMN _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.details ? # _atom_sites.entry_id 7RWR _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O P # loop_