HEADER METAL BINDING PROTEIN 20-AUG-21 7RWW TITLE CRYSTAL STRUCTURE OF A ZN-BOUND RIDC1 VARIANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: SOLUBLE CYTOCHROME B562; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: CYTOCHROME B-562; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: CYBC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.KAKKIS,E.GOLUB REVDAT 4 13-NOV-24 7RWW 1 REMARK REVDAT 3 25-OCT-23 7RWW 1 REMARK REVDAT 2 11-JAN-23 7RWW 1 JRNL REVDAT 1 29-JUN-22 7RWW 0 JRNL AUTH A.KAKKIS,E.GOLUB,T.S.CHOI,F.A.TEZCAN JRNL TITL REDOX- AND METAL-DIRECTED STRUCTURAL DIVERSIFICATION IN JRNL TITL 2 DESIGNED METALLOPROTEIN ASSEMBLIES. JRNL REF CHEM.COMMUN.(CAMB.) V. 58 6958 2022 JRNL REFN ESSN 1364-548X JRNL PMID 35642584 JRNL DOI 10.1039/D2CC02440C REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 40172 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.180 REMARK 3 FREE R VALUE TEST SET COUNT : 2080 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.9600 - 4.1900 0.97 2610 142 0.1833 0.2167 REMARK 3 2 4.1900 - 3.3300 0.97 2577 138 0.1449 0.1613 REMARK 3 3 3.3300 - 2.9100 0.96 2556 135 0.1712 0.1884 REMARK 3 4 2.9100 - 2.6400 0.97 2550 156 0.1648 0.2282 REMARK 3 5 2.6400 - 2.4500 0.98 2573 132 0.1684 0.1851 REMARK 3 6 2.4500 - 2.3100 0.95 2511 134 0.1755 0.2122 REMARK 3 7 2.3100 - 2.1900 0.96 2506 151 0.1753 0.2059 REMARK 3 8 2.1900 - 2.1000 0.97 2590 115 0.1778 0.2067 REMARK 3 9 2.1000 - 2.0200 0.97 2555 141 0.1852 0.2586 REMARK 3 10 2.0200 - 1.9500 0.97 2564 125 0.1924 0.2265 REMARK 3 11 1.9500 - 1.8900 0.93 2397 141 0.1992 0.2398 REMARK 3 12 1.8900 - 1.8300 0.96 2554 135 0.2083 0.2386 REMARK 3 13 1.8300 - 1.7800 0.96 2503 150 0.2115 0.2878 REMARK 3 14 1.7800 - 1.7400 0.96 2543 148 0.2082 0.2377 REMARK 3 15 1.7400 - 1.7000 0.97 2503 137 0.2117 0.2507 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.178 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.507 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.14 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 3732 REMARK 3 ANGLE : 1.124 5136 REMARK 3 CHIRALITY : 0.048 516 REMARK 3 PLANARITY : 0.007 670 REMARK 3 DIHEDRAL : 23.339 1346 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7RWW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1000258860. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40172 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 80.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 14.80 REMARK 200 R MERGE (I) : 0.12100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.80900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2BC5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 45% MPD, 0.1 M HEPES, 0.2 M MGCL2, PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.45650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -305.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS C 101 HAC HEC C 204 1.22 REMARK 500 HE2 HIS D 77 ZN ZN A 201 1.26 REMARK 500 SG CYS B 101 HAC HEC B 203 1.43 REMARK 500 SG CYS D 101 HAC HEC D 202 1.46 REMARK 500 HE22 GLN A 93 OE1 GLN C 103 1.47 REMARK 500 HZ1 LYS A 27 O HOH A 302 1.51 REMARK 500 HD1 HIS A 59 ZN ZN A 203 1.54 REMARK 500 HZ1 LYS C 47 O HOH C 303 1.54 REMARK 500 OD2 ASP D 60 HH TYR D 105 1.55 REMARK 500 SG CYS A 101 HAC HEC A 204 1.56 REMARK 500 HO4 MPD C 203 O HOH C 312 1.60 REMARK 500 NE2 HIS C 77 ZN ZN C 201 1.64 REMARK 500 OD1 ASP B 5 O HOH B 301 1.82 REMARK 500 O GLU A 92 O HOH A 301 1.84 REMARK 500 NE2 GLN C 103 O HOH C 301 1.84 REMARK 500 O HOH A 362 O HOH A 369 1.88 REMARK 500 O HOH B 327 O HOH B 353 1.90 REMARK 500 O HOH D 349 O HOH D 351 1.90 REMARK 500 C GLU A 92 O HOH A 301 1.96 REMARK 500 O HOH C 304 O HOH C 321 1.98 REMARK 500 SG CYS B 98 CAB HEC B 203 2.02 REMARK 500 OE1 GLU D 92 O HOH D 301 2.02 REMARK 500 OE1 GLN C 25 O HOH C 302 2.03 REMARK 500 NE2 GLN A 93 OE1 GLN C 103 2.05 REMARK 500 O ALA A 91 O HOH A 301 2.08 REMARK 500 O HOH B 328 O HOH D 351 2.08 REMARK 500 NZ LYS A 27 O HOH A 302 2.09 REMARK 500 O HOH C 350 O HOH C 358 2.12 REMARK 500 O HOH C 307 O HOH C 320 2.13 REMARK 500 O HOH A 349 O HOH A 371 2.15 REMARK 500 NZ LYS C 47 O HOH C 303 2.16 REMARK 500 NZ LYS C 47 O HOH C 304 2.19 REMARK 500 OE1 GLU A 8 O HOH A 303 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HZ3 LYS C 19 OE1 GLU D 49 2543 1.57 REMARK 500 O HOH A 330 O HOH B 325 2544 1.62 REMARK 500 O HOH C 345 O HOH D 353 2443 1.91 REMARK 500 O HOH A 307 O HOH B 308 2544 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS D 98 CA - CB - SG ANGL. DEV. = 6.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 1 N REMARK 620 2 ALA A 1 O 70.4 REMARK 620 3 ASP A 39 OD1 155.4 105.3 REMARK 620 4 ASP A 39 OD2 94.1 89.6 61.3 REMARK 620 5 HOH C 355 O 94.5 150.7 98.4 117.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 204 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 7 SD REMARK 620 2 HEC A 204 NA 91.0 REMARK 620 3 HEC A 204 NB 86.0 90.3 REMARK 620 4 HEC A 204 NC 88.6 177.4 92.3 REMARK 620 5 HEC A 204 ND 94.0 90.2 179.5 87.2 REMARK 620 6 HIS A 102 NE2 177.9 89.9 92.1 90.6 87.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 59 ND1 REMARK 620 2 HIS B 73 NE2 100.0 REMARK 620 3 HOH B 348 O 125.7 102.7 REMARK 620 4 HOH B 349 O 105.3 114.2 108.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 77 NE2 REMARK 620 2 GLU A 81 OE1 108.9 REMARK 620 3 HOH D 302 O 140.5 93.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 77 NE2 REMARK 620 2 HIS D 77 NE2 116.7 REMARK 620 3 GLU D 81 OE1 118.1 115.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC B 203 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET B 7 SD REMARK 620 2 HEC B 203 NA 90.9 REMARK 620 3 HEC B 203 NB 84.9 89.3 REMARK 620 4 HEC B 203 NC 90.2 178.7 91.4 REMARK 620 5 HEC B 203 ND 94.6 89.7 178.9 89.6 REMARK 620 6 HIS B 102 NE2 175.6 87.0 91.2 91.9 89.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 77 NE2 REMARK 620 2 GLU B 81 OE1 96.9 REMARK 620 3 HIS C 77 NE2 101.2 147.0 REMARK 620 4 LYS C 83 NZ 104.0 92.6 109.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 81 OE1 REMARK 620 2 GLU B 81 OE2 58.1 REMARK 620 3 GLU C 81 OE1 89.2 140.0 REMARK 620 4 GLU C 81 OE2 67.9 88.6 55.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC C 204 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET C 7 SD REMARK 620 2 HEC C 204 NA 92.0 REMARK 620 3 HEC C 204 NB 86.6 88.3 REMARK 620 4 HEC C 204 NC 90.4 177.4 90.8 REMARK 620 5 HEC C 204 ND 94.0 92.2 179.3 88.7 REMARK 620 6 HIS C 102 NE2 178.6 88.7 92.3 88.8 87.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 73 NE2 REMARK 620 2 HOH C 337 O 118.8 REMARK 620 3 HOH C 356 O 102.1 111.8 REMARK 620 4 HIS D 59 ND1 81.7 127.2 109.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC D 202 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET D 7 SD REMARK 620 2 HEC D 202 NA 88.4 REMARK 620 3 HEC D 202 NB 88.7 91.0 REMARK 620 4 HEC D 202 NC 91.4 179.7 89.0 REMARK 620 5 HEC D 202 ND 92.9 90.0 178.2 90.0 REMARK 620 6 HIS D 102 NE2 176.0 88.3 89.2 92.0 89.3 REMARK 620 N 1 2 3 4 5 DBREF 7RWW A 1 106 UNP P0ABE7 C562_ECOLX 23 128 DBREF 7RWW B 1 106 UNP P0ABE7 C562_ECOLX 23 128 DBREF 7RWW C 1 106 UNP P0ABE7 C562_ECOLX 23 128 DBREF 7RWW D 1 106 UNP P0ABE7 C562_ECOLX 23 128 SEQADV 7RWW ALA A 34 UNP P0ABE7 ARG 56 ENGINEERED MUTATION SEQADV 7RWW ALA A 38 UNP P0ABE7 LEU 60 ENGINEERED MUTATION SEQADV 7RWW TRP A 41 UNP P0ABE7 GLN 63 ENGINEERED MUTATION SEQADV 7RWW SER A 42 UNP P0ABE7 LYS 64 ENGINEERED MUTATION SEQADV 7RWW HIS A 59 UNP P0ABE7 LYS 81 ENGINEERED MUTATION SEQADV 7RWW TRP A 66 UNP P0ABE7 ASP 88 ENGINEERED MUTATION SEQADV 7RWW ILE A 69 UNP P0ABE7 VAL 91 ENGINEERED MUTATION SEQADV 7RWW HIS A 73 UNP P0ABE7 ASP 95 ENGINEERED MUTATION SEQADV 7RWW ALA A 74 UNP P0ABE7 ASP 96 ENGINEERED MUTATION SEQADV 7RWW HIS A 77 UNP P0ABE7 LYS 99 ENGINEERED MUTATION SEQADV 7RWW CYS A 96 UNP P0ABE7 THR 118 ENGINEERED MUTATION SEQADV 7RWW CYS A 98 UNP P0ABE7 ARG 120 ENGINEERED MUTATION SEQADV 7RWW CYS A 101 UNP P0ABE7 TYR 123 ENGINEERED MUTATION SEQADV 7RWW ALA B 34 UNP P0ABE7 ARG 56 ENGINEERED MUTATION SEQADV 7RWW ALA B 38 UNP P0ABE7 LEU 60 ENGINEERED MUTATION SEQADV 7RWW TRP B 41 UNP P0ABE7 GLN 63 ENGINEERED MUTATION SEQADV 7RWW SER B 42 UNP P0ABE7 LYS 64 ENGINEERED MUTATION SEQADV 7RWW HIS B 59 UNP P0ABE7 LYS 81 ENGINEERED MUTATION SEQADV 7RWW TRP B 66 UNP P0ABE7 ASP 88 ENGINEERED MUTATION SEQADV 7RWW ILE B 69 UNP P0ABE7 VAL 91 ENGINEERED MUTATION SEQADV 7RWW HIS B 73 UNP P0ABE7 ASP 95 ENGINEERED MUTATION SEQADV 7RWW ALA B 74 UNP P0ABE7 ASP 96 ENGINEERED MUTATION SEQADV 7RWW HIS B 77 UNP P0ABE7 LYS 99 ENGINEERED MUTATION SEQADV 7RWW CYS B 96 UNP P0ABE7 THR 118 ENGINEERED MUTATION SEQADV 7RWW CYS B 98 UNP P0ABE7 ARG 120 ENGINEERED MUTATION SEQADV 7RWW CYS B 101 UNP P0ABE7 TYR 123 ENGINEERED MUTATION SEQADV 7RWW ALA C 34 UNP P0ABE7 ARG 56 ENGINEERED MUTATION SEQADV 7RWW ALA C 38 UNP P0ABE7 LEU 60 ENGINEERED MUTATION SEQADV 7RWW TRP C 41 UNP P0ABE7 GLN 63 ENGINEERED MUTATION SEQADV 7RWW SER C 42 UNP P0ABE7 LYS 64 ENGINEERED MUTATION SEQADV 7RWW HIS C 59 UNP P0ABE7 LYS 81 ENGINEERED MUTATION SEQADV 7RWW TRP C 66 UNP P0ABE7 ASP 88 ENGINEERED MUTATION SEQADV 7RWW ILE C 69 UNP P0ABE7 VAL 91 ENGINEERED MUTATION SEQADV 7RWW HIS C 73 UNP P0ABE7 ASP 95 ENGINEERED MUTATION SEQADV 7RWW ALA C 74 UNP P0ABE7 ASP 96 ENGINEERED MUTATION SEQADV 7RWW HIS C 77 UNP P0ABE7 LYS 99 ENGINEERED MUTATION SEQADV 7RWW CYS C 96 UNP P0ABE7 THR 118 ENGINEERED MUTATION SEQADV 7RWW CYS C 98 UNP P0ABE7 ARG 120 ENGINEERED MUTATION SEQADV 7RWW CYS C 101 UNP P0ABE7 TYR 123 ENGINEERED MUTATION SEQADV 7RWW ALA D 34 UNP P0ABE7 ARG 56 ENGINEERED MUTATION SEQADV 7RWW ALA D 38 UNP P0ABE7 LEU 60 ENGINEERED MUTATION SEQADV 7RWW TRP D 41 UNP P0ABE7 GLN 63 ENGINEERED MUTATION SEQADV 7RWW SER D 42 UNP P0ABE7 LYS 64 ENGINEERED MUTATION SEQADV 7RWW HIS D 59 UNP P0ABE7 LYS 81 ENGINEERED MUTATION SEQADV 7RWW TRP D 66 UNP P0ABE7 ASP 88 ENGINEERED MUTATION SEQADV 7RWW ILE D 69 UNP P0ABE7 VAL 91 ENGINEERED MUTATION SEQADV 7RWW HIS D 73 UNP P0ABE7 ASP 95 ENGINEERED MUTATION SEQADV 7RWW ALA D 74 UNP P0ABE7 ASP 96 ENGINEERED MUTATION SEQADV 7RWW HIS D 77 UNP P0ABE7 LYS 99 ENGINEERED MUTATION SEQADV 7RWW CYS D 96 UNP P0ABE7 THR 118 ENGINEERED MUTATION SEQADV 7RWW CYS D 98 UNP P0ABE7 ARG 120 ENGINEERED MUTATION SEQADV 7RWW CYS D 101 UNP P0ABE7 TYR 123 ENGINEERED MUTATION SEQRES 1 A 106 ALA ASP LEU GLU ASP ASN MET GLU THR LEU ASN ASP ASN SEQRES 2 A 106 LEU LYS VAL ILE GLU LYS ALA ASP ASN ALA ALA GLN VAL SEQRES 3 A 106 LYS ASP ALA LEU THR LYS MET ALA ALA ALA ALA ALA ASP SEQRES 4 A 106 ALA TRP SER ALA THR PRO PRO LYS LEU GLU ASP LYS SER SEQRES 5 A 106 PRO ASP SER PRO GLU MET HIS ASP PHE ARG HIS GLY PHE SEQRES 6 A 106 TRP ILE LEU ILE GLY GLN ILE HIS ALA ALA LEU HIS LEU SEQRES 7 A 106 ALA ASN GLU GLY LYS VAL LYS GLU ALA GLN ALA ALA ALA SEQRES 8 A 106 GLU GLN LEU LYS CYS THR CYS ASN ALA CYS HIS GLN LYS SEQRES 9 A 106 TYR ARG SEQRES 1 B 106 ALA ASP LEU GLU ASP ASN MET GLU THR LEU ASN ASP ASN SEQRES 2 B 106 LEU LYS VAL ILE GLU LYS ALA ASP ASN ALA ALA GLN VAL SEQRES 3 B 106 LYS ASP ALA LEU THR LYS MET ALA ALA ALA ALA ALA ASP SEQRES 4 B 106 ALA TRP SER ALA THR PRO PRO LYS LEU GLU ASP LYS SER SEQRES 5 B 106 PRO ASP SER PRO GLU MET HIS ASP PHE ARG HIS GLY PHE SEQRES 6 B 106 TRP ILE LEU ILE GLY GLN ILE HIS ALA ALA LEU HIS LEU SEQRES 7 B 106 ALA ASN GLU GLY LYS VAL LYS GLU ALA GLN ALA ALA ALA SEQRES 8 B 106 GLU GLN LEU LYS CYS THR CYS ASN ALA CYS HIS GLN LYS SEQRES 9 B 106 TYR ARG SEQRES 1 C 106 ALA ASP LEU GLU ASP ASN MET GLU THR LEU ASN ASP ASN SEQRES 2 C 106 LEU LYS VAL ILE GLU LYS ALA ASP ASN ALA ALA GLN VAL SEQRES 3 C 106 LYS ASP ALA LEU THR LYS MET ALA ALA ALA ALA ALA ASP SEQRES 4 C 106 ALA TRP SER ALA THR PRO PRO LYS LEU GLU ASP LYS SER SEQRES 5 C 106 PRO ASP SER PRO GLU MET HIS ASP PHE ARG HIS GLY PHE SEQRES 6 C 106 TRP ILE LEU ILE GLY GLN ILE HIS ALA ALA LEU HIS LEU SEQRES 7 C 106 ALA ASN GLU GLY LYS VAL LYS GLU ALA GLN ALA ALA ALA SEQRES 8 C 106 GLU GLN LEU LYS CYS THR CYS ASN ALA CYS HIS GLN LYS SEQRES 9 C 106 TYR ARG SEQRES 1 D 106 ALA ASP LEU GLU ASP ASN MET GLU THR LEU ASN ASP ASN SEQRES 2 D 106 LEU LYS VAL ILE GLU LYS ALA ASP ASN ALA ALA GLN VAL SEQRES 3 D 106 LYS ASP ALA LEU THR LYS MET ALA ALA ALA ALA ALA ASP SEQRES 4 D 106 ALA TRP SER ALA THR PRO PRO LYS LEU GLU ASP LYS SER SEQRES 5 D 106 PRO ASP SER PRO GLU MET HIS ASP PHE ARG HIS GLY PHE SEQRES 6 D 106 TRP ILE LEU ILE GLY GLN ILE HIS ALA ALA LEU HIS LEU SEQRES 7 D 106 ALA ASN GLU GLY LYS VAL LYS GLU ALA GLN ALA ALA ALA SEQRES 8 D 106 GLU GLN LEU LYS CYS THR CYS ASN ALA CYS HIS GLN LYS SEQRES 9 D 106 TYR ARG HET ZN A 201 2 HET ZN A 202 1 HET ZN A 203 1 HET HEC A 204 73 HET MPD B 201 19 HET MPD B 202 22 HET HEC B 203 73 HET ZN C 201 2 HET MRD C 202 19 HET MPD C 203 22 HET HEC C 204 73 HET EPE C 205 32 HET ZN D 201 1 HET HEC D 202 73 HETNAM ZN ZINC ION HETNAM HEC HEME C HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM MRD (4R)-2-METHYLPENTANE-2,4-DIOL HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN EPE HEPES FORMUL 5 ZN 5(ZN 2+) FORMUL 8 HEC 4(C34 H34 FE N4 O4) FORMUL 9 MPD 3(C6 H14 O2) FORMUL 13 MRD C6 H14 O2 FORMUL 16 EPE C8 H18 N2 O4 S FORMUL 19 HOH *251(H2 O) HELIX 1 AA1 ASP A 2 LYS A 19 1 18 HELIX 2 AA2 ASN A 22 TRP A 41 1 20 HELIX 3 AA3 PRO A 45 GLU A 49 5 5 HELIX 4 AA4 SER A 55 GLU A 81 1 27 HELIX 5 AA5 LYS A 83 ARG A 106 1 24 HELIX 6 AA6 ASP B 2 ALA B 20 1 19 HELIX 7 AA7 ASN B 22 TRP B 41 1 20 HELIX 8 AA8 PRO B 45 GLU B 49 5 5 HELIX 9 AA9 SER B 55 GLU B 81 1 27 HELIX 10 AB1 LYS B 83 ARG B 106 1 24 HELIX 11 AB2 ASP C 2 ALA C 20 1 19 HELIX 12 AB3 ASN C 22 TRP C 41 1 20 HELIX 13 AB4 PRO C 45 GLU C 49 5 5 HELIX 14 AB5 SER C 55 GLU C 81 1 27 HELIX 15 AB6 LYS C 83 ARG C 106 1 24 HELIX 16 AB7 ASP D 2 ALA D 20 1 19 HELIX 17 AB8 ASN D 22 TRP D 41 1 20 HELIX 18 AB9 PRO D 45 GLU D 49 5 5 HELIX 19 AC1 SER D 55 GLU D 81 1 27 HELIX 20 AC2 LYS D 83 ARG D 106 1 24 SSBOND 1 CYS A 96 CYS C 96 1555 1555 1.99 SSBOND 2 CYS B 96 CYS D 96 1555 1555 2.05 LINK SG CYS A 98 CAB HEC A 204 1555 1555 1.97 LINK SG CYS A 101 CAC HEC A 204 1555 1555 1.91 LINK SG CYS B 101 CAC HEC B 203 1555 1555 1.85 LINK SG CYS C 98 CAB HEC C 204 1555 1555 1.93 LINK SG CYS C 101 CAC HEC C 204 1555 1555 1.85 LINK SG CYS D 98 CAB HEC D 202 1555 1555 1.93 LINK SG CYS D 101 CAC HEC D 202 1555 1555 1.88 LINK N ALA A 1 ZN ZN A 202 1555 1555 2.50 LINK O ALA A 1 ZN ZN A 202 1555 1555 2.20 LINK SD MET A 7 FE HEC A 204 1555 1555 2.30 LINK OD1 ASP A 39 ZN ZN A 202 1555 1555 2.22 LINK OD2 ASP A 39 ZN ZN A 202 1555 1555 2.01 LINK ND1 HIS A 59 ZN ZN A 203 1555 1555 1.96 LINK NE2 HIS A 77 ZN A ZN A 201 1555 1555 1.76 LINK NE2 HIS A 77 ZN B ZN A 201 1555 1555 2.00 LINK OE1AGLU A 81 ZN A ZN A 201 1555 1555 2.05 LINK NE2 HIS A 102 FE HEC A 204 1555 1555 2.00 LINK ZN B ZN A 201 NE2 HIS D 77 1555 1555 1.95 LINK ZN B ZN A 201 OE1BGLU D 81 1555 1555 2.58 LINK ZN A ZN A 201 O HOH D 302 1555 1555 2.28 LINK ZN ZN A 202 O HOH C 355 1555 1556 2.60 LINK ZN ZN A 203 NE2AHIS B 73 1555 1555 2.06 LINK ZN ZN A 203 O HOH B 348 1555 1555 2.18 LINK ZN ZN A 203 O HOH B 349 1555 1555 2.38 LINK SD MET B 7 FE HEC B 203 1555 1555 2.31 LINK NE2 HIS B 77 ZN A ZN C 201 1555 1555 1.94 LINK OE1AGLU B 81 ZN A ZN C 201 1555 1555 2.00 LINK OE1BGLU B 81 ZN B ZN C 201 1555 1555 2.04 LINK OE2BGLU B 81 ZN B ZN C 201 1555 1555 2.43 LINK NE2 HIS B 102 FE HEC B 203 1555 1555 2.02 LINK SD MET C 7 FE HEC C 204 1555 1555 2.33 LINK NE2BHIS C 73 ZN ZN D 201 1555 1555 2.27 LINK NE2 HIS C 77 ZN A ZN C 201 1555 1555 2.21 LINK OE1BGLU C 81 ZN B ZN C 201 1555 1555 2.52 LINK OE2BGLU C 81 ZN B ZN C 201 1555 1555 2.16 LINK NZ LYS C 83 ZN A ZN C 201 1555 1555 2.46 LINK NE2 HIS C 102 FE HEC C 204 1555 1555 1.97 LINK O HOH C 337 ZN ZN D 201 1555 1555 2.43 LINK O HOH C 356 ZN ZN D 201 1555 1555 2.17 LINK SD MET D 7 FE HEC D 202 1555 1555 2.36 LINK ND1 HIS D 59 ZN ZN D 201 1555 1555 2.13 LINK NE2 HIS D 102 FE HEC D 202 1555 1555 2.02 CRYST1 47.791 86.913 49.176 90.00 109.16 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020924 0.000000 0.007272 0.00000 SCALE2 0.000000 0.011506 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021528 0.00000