HEADER GENE REGULATION/INHIBITOR 23-AUG-21 7RXT TITLE CRYSTAL OF BRD4(D1) WITH 2-[(3R)-3-{5-[2-(3,5-DIMETHYLPHENOXY) TITLE 2 PYRIMIDIN-4-YL]-4-(4-IODOPHENYL)-1H-IMIDAZOL-1-YL}PYRROLIDIN-1- TITLE 3 YL]ETHAN-1-AMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BROMODOMAIN-CONTAINING PROTEIN 4; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROTEIN HUNK1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRD4, HUNK1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS BRD4, GENE REGULATION, GENE REGULATION-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.CUI,J.A.JOHNSON,K.SHI,H.AIHARA,W.C.K.POMERANTZ REVDAT 3 18-OCT-23 7RXT 1 REMARK REVDAT 2 23-FEB-22 7RXT 1 JRNL REVDAT 1 19-JAN-22 7RXT 0 JRNL AUTH H.CUI,A.DIVAKARAN,Z.J.HOELL,M.O.ELLINGSON,C.R.SCHOLTZ, JRNL AUTH 2 H.ZAHID,J.A.JOHNSON,E.C.GRIFFITH,C.T.GEE,A.L.LEE,S.KHANAL, JRNL AUTH 3 K.SHI,H.AIHARA,V.H.SHAH,R.E.LEE,D.A.HARKI,W.C.K.POMERANTZ JRNL TITL A STRUCTURE-BASED DESIGN APPROACH FOR GENERATING HIGH JRNL TITL 2 AFFINITY BRD4 D1-SELECTIVE CHEMICAL PROBES. JRNL REF J.MED.CHEM. V. 65 2342 2022 JRNL REFN ISSN 0022-2623 JRNL PMID 35007061 JRNL DOI 10.1021/ACS.JMEDCHEM.1C01779 REMARK 2 REMARK 2 RESOLUTION. 1.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 16386 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.640 REMARK 3 FREE R VALUE TEST SET COUNT : 760 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.9800 - 2.8700 0.97 3242 147 0.1708 0.2189 REMARK 3 2 2.8700 - 2.2800 0.99 3128 169 0.2167 0.2256 REMARK 3 3 2.2800 - 1.9900 1.00 3114 141 0.2245 0.2608 REMARK 3 4 1.9900 - 1.8100 1.00 3113 161 0.2287 0.2674 REMARK 3 5 1.8100 - 1.6800 0.98 3029 142 0.3079 0.3394 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.430 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.19 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 42 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.0453 29.1156 20.9006 REMARK 3 T TENSOR REMARK 3 T11: 0.5009 T22: 0.3467 REMARK 3 T33: 0.2609 T12: -0.1305 REMARK 3 T13: -0.0354 T23: -0.0859 REMARK 3 L TENSOR REMARK 3 L11: 6.1355 L22: 6.4137 REMARK 3 L33: 5.4134 L12: -1.4766 REMARK 3 L13: -0.1091 L23: 0.1286 REMARK 3 S TENSOR REMARK 3 S11: 0.1268 S12: -0.6417 S13: 0.3161 REMARK 3 S21: 0.5157 S22: -0.3194 S23: -0.0630 REMARK 3 S31: -1.1650 S32: 0.0006 S33: 0.1712 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 52 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.2267 13.5006 29.8528 REMARK 3 T TENSOR REMARK 3 T11: 0.6789 T22: 0.7190 REMARK 3 T33: 0.3893 T12: 0.1135 REMARK 3 T13: -0.1527 T23: 0.1022 REMARK 3 L TENSOR REMARK 3 L11: 1.1944 L22: 4.0886 REMARK 3 L33: 2.3713 L12: 0.1327 REMARK 3 L13: -0.7939 L23: -0.9163 REMARK 3 S TENSOR REMARK 3 S11: -0.2147 S12: 0.3286 S13: 0.0798 REMARK 3 S21: 0.5991 S22: -0.1583 S23: -0.4903 REMARK 3 S31: 0.2689 S32: 1.8811 S33: 0.3964 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 61 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.7624 5.7027 17.6734 REMARK 3 T TENSOR REMARK 3 T11: 0.4615 T22: 0.6190 REMARK 3 T33: 0.3989 T12: 0.6984 REMARK 3 T13: 0.1116 T23: 0.1991 REMARK 3 L TENSOR REMARK 3 L11: 1.8670 L22: 2.5147 REMARK 3 L33: 2.5023 L12: -0.4773 REMARK 3 L13: -0.5170 L23: -0.1040 REMARK 3 S TENSOR REMARK 3 S11: -0.0507 S12: -0.0432 S13: -0.0785 REMARK 3 S21: 0.0068 S22: -0.0853 S23: -0.5507 REMARK 3 S31: 0.6198 S32: 0.8004 S33: 0.3910 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.6892 14.5481 5.6443 REMARK 3 T TENSOR REMARK 3 T11: 0.1790 T22: 0.2895 REMARK 3 T33: 0.1851 T12: 0.0596 REMARK 3 T13: 0.0269 T23: 0.0327 REMARK 3 L TENSOR REMARK 3 L11: 2.4375 L22: 5.5684 REMARK 3 L33: 4.6332 L12: -1.3482 REMARK 3 L13: 0.0827 L23: 0.2675 REMARK 3 S TENSOR REMARK 3 S11: -0.1002 S12: 0.0978 S13: -0.1431 REMARK 3 S21: -0.2321 S22: -0.1306 S23: -0.1867 REMARK 3 S31: 0.6225 S32: 1.0473 S33: 0.2613 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.2895 29.8021 10.0463 REMARK 3 T TENSOR REMARK 3 T11: 0.7443 T22: 0.2433 REMARK 3 T33: 0.2788 T12: 0.0261 REMARK 3 T13: -0.1145 T23: -0.0151 REMARK 3 L TENSOR REMARK 3 L11: 3.1765 L22: 3.2246 REMARK 3 L33: 3.1504 L12: -1.0569 REMARK 3 L13: -0.3832 L23: -0.4534 REMARK 3 S TENSOR REMARK 3 S11: 0.1636 S12: 0.1957 S13: 0.3879 REMARK 3 S21: -0.5079 S22: -0.3594 S23: 0.1380 REMARK 3 S31: -1.9259 S32: -0.2826 S33: 0.2316 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 97 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.3908 19.2652 20.2396 REMARK 3 T TENSOR REMARK 3 T11: 0.1625 T22: 0.2838 REMARK 3 T33: 0.2086 T12: -0.0442 REMARK 3 T13: -0.0323 T23: 0.0421 REMARK 3 L TENSOR REMARK 3 L11: 0.9515 L22: 2.4738 REMARK 3 L33: 5.8242 L12: -0.0123 REMARK 3 L13: 1.1285 L23: -0.4062 REMARK 3 S TENSOR REMARK 3 S11: -0.1612 S12: 0.0411 S13: 0.1684 REMARK 3 S21: 0.2297 S22: -0.2276 S23: -0.1271 REMARK 3 S31: -0.4259 S32: 0.4796 S33: 0.3337 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 122 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.6598 14.2377 17.6277 REMARK 3 T TENSOR REMARK 3 T11: 0.1864 T22: 0.2251 REMARK 3 T33: 0.2097 T12: -0.0441 REMARK 3 T13: 0.0066 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.7747 L22: 1.5527 REMARK 3 L33: 5.0827 L12: -0.7266 REMARK 3 L13: 0.8391 L23: -1.6741 REMARK 3 S TENSOR REMARK 3 S11: -0.1224 S12: -0.0411 S13: 0.0471 REMARK 3 S21: 0.0663 S22: -0.0430 S23: -0.0677 REMARK 3 S31: 0.3005 S32: -0.3054 S33: 0.1937 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 140 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.6173 18.8949 6.5253 REMARK 3 T TENSOR REMARK 3 T11: 0.1885 T22: 0.5790 REMARK 3 T33: 0.3220 T12: -0.0196 REMARK 3 T13: -0.0371 T23: -0.0359 REMARK 3 L TENSOR REMARK 3 L11: 4.6706 L22: 2.1558 REMARK 3 L33: 5.7222 L12: 1.4855 REMARK 3 L13: -1.7810 L23: -3.4817 REMARK 3 S TENSOR REMARK 3 S11: -0.2272 S12: -0.0313 S13: 0.3426 REMARK 3 S21: 0.0181 S22: 0.2976 S23: 0.5194 REMARK 3 S31: 0.3292 S32: -1.4820 S33: -0.0645 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 145 THROUGH 167 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0625 6.4820 10.4904 REMARK 3 T TENSOR REMARK 3 T11: 0.6260 T22: 0.1964 REMARK 3 T33: 0.2711 T12: 0.0410 REMARK 3 T13: 0.0321 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 2.8587 L22: 3.9297 REMARK 3 L33: 4.5185 L12: -1.1644 REMARK 3 L13: 1.3794 L23: -2.9153 REMARK 3 S TENSOR REMARK 3 S11: 0.0284 S12: -0.1031 S13: -0.2983 REMARK 3 S21: -0.1571 S22: -0.1088 S23: -0.2589 REMARK 3 S31: 1.6760 S32: -0.0780 S33: 0.0074 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7RXT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1000259163. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-AUG-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16435 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.680 REMARK 200 RESOLUTION RANGE LOW (A) : 110.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.51600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7JT4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.83150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.23950 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 20.83150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 55.23950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 374 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 168 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 400 O HOH A 412 2.01 REMARK 500 NE2 GLN A 59 O HOH A 301 2.07 REMARK 500 O HOH A 333 O HOH A 388 2.10 REMARK 500 NH2 ARG A 68 O HOH A 302 2.14 REMARK 500 O HOH A 385 O HOH A 401 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 94 79.58 -115.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 415 DISTANCE = 5.92 ANGSTROMS DBREF 7RXT A 44 168 UNP O60885 BRD4_HUMAN 44 168 SEQADV 7RXT SER A 42 UNP O60885 EXPRESSION TAG SEQADV 7RXT MET A 43 UNP O60885 EXPRESSION TAG SEQRES 1 A 127 SER MET ASN PRO PRO PRO PRO GLU THR SER ASN PRO ASN SEQRES 2 A 127 LYS PRO LYS ARG GLN THR ASN GLN LEU GLN TYR LEU LEU SEQRES 3 A 127 ARG VAL VAL LEU LYS THR LEU TRP LYS HIS GLN PHE ALA SEQRES 4 A 127 TRP PRO PHE GLN GLN PRO VAL ASP ALA VAL LYS LEU ASN SEQRES 5 A 127 LEU PRO ASP TYR TYR LYS ILE ILE LYS THR PRO MET ASP SEQRES 6 A 127 MET GLY THR ILE LYS LYS ARG LEU GLU ASN ASN TYR TYR SEQRES 7 A 127 TRP ASN ALA GLN GLU CYS ILE GLN ASP PHE ASN THR MET SEQRES 8 A 127 PHE THR ASN CYS TYR ILE TYR ASN LYS PRO GLY ASP ASP SEQRES 9 A 127 ILE VAL LEU MET ALA GLU ALA LEU GLU LYS LEU PHE LEU SEQRES 10 A 127 GLN LYS ILE ASN GLU LEU PRO THR GLU GLU HET 7ZK A 201 35 HETNAM 7ZK 2-[(3R)-3-{5-[2-(3,5-DIMETHYLPHENOXY)PYRIMIDIN-4-YL]-4- HETNAM 2 7ZK (4-IODOPHENYL)-1H-IMIDAZOL-1-YL}PYRROLIDIN-1-YL]ETHAN- HETNAM 3 7ZK 1-AMINE FORMUL 2 7ZK C27 H29 I N6 O FORMUL 3 HOH *115(H2 O) HELIX 1 AA1 THR A 60 VAL A 69 1 10 HELIX 2 AA2 VAL A 69 LYS A 76 1 8 HELIX 3 AA3 ALA A 80 GLN A 84 5 5 HELIX 4 AA4 ASP A 96 ILE A 101 1 6 HELIX 5 AA5 ASP A 106 ASN A 116 1 11 HELIX 6 AA6 ASN A 121 ASN A 140 1 20 HELIX 7 AA7 ASP A 144 ASN A 162 1 19 CRYST1 30.067 41.663 110.479 90.00 90.00 90.00 P 2 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.033259 0.000000 0.000000 0.00000 SCALE2 0.000000 0.024002 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009051 0.00000