HEADER HYDROLASE 24-AUG-21 7RY7 TITLE STRUCTURE OF PLASMEPSIN X (PM10, PMX) FROM PLASMODIUM FALCIPARUM 3D7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLASMEPSIN X; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.23.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM (ISOLATE 3D7); SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 STRAIN: ISOLATE 3D7; SOURCE 5 GENE: PF3D7_0808200; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: HEK; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PLFAA.17789.B.HE11 KEYWDS SSGCID, PLASMEPSIN X, PLASMODIUM FALCIPARUM, PM10, PMX, STRUCTURAL KEYWDS 2 GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, KEYWDS 3 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 4 18-OCT-23 7RY7 1 REMARK REVDAT 3 30-MAR-22 7RY7 1 JRNL REVDAT 2 16-FEB-22 7RY7 1 JRNL REVDAT 1 02-FEB-22 7RY7 0 SPRSDE 02-FEB-22 7RY7 6ORS JRNL AUTH P.KESARI,A.DESHMUKH,N.PAHELKAR,A.B.SURYAWANSHI,I.RATHORE, JRNL AUTH 2 V.MISHRA,J.H.DUPUIS,H.XIAO,A.GUSTCHINA,J.ABENDROTH, JRNL AUTH 3 M.LABAIED,R.Y.YADA,A.WLODAWER,T.E.EDWARDS,D.D.LORIMER, JRNL AUTH 4 P.BHAUMIK JRNL TITL STRUCTURES OF PLASMEPSIN X FROM PLASMODIUM FALCIPARUM REVEAL JRNL TITL 2 A NOVEL INACTIVATION MECHANISM OF THE ZYMOGEN AND MOLECULAR JRNL TITL 3 BASIS FOR BINDING OF INHIBITORS IN MATURE ENZYME. JRNL REF PROTEIN SCI. V. 31 882 2022 JRNL REFN ESSN 1469-896X JRNL PMID 35048450 JRNL DOI 10.1002/PRO.4279 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19 DEV 4329 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.26 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 28299 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.490 REMARK 3 FREE R VALUE TEST SET COUNT : 2120 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.2600 - 5.1700 0.99 1831 125 0.1907 0.2023 REMARK 3 2 5.1700 - 4.1100 1.00 1792 138 0.1492 0.1909 REMARK 3 3 4.1100 - 3.5900 1.00 1756 147 0.1802 0.1851 REMARK 3 4 3.5900 - 3.2600 1.00 1763 139 0.1964 0.2398 REMARK 3 5 3.2600 - 3.0300 1.00 1765 124 0.2177 0.2631 REMARK 3 6 3.0300 - 2.8500 1.00 1723 147 0.2381 0.2808 REMARK 3 7 2.8500 - 2.7100 1.00 1775 126 0.2324 0.3112 REMARK 3 8 2.7100 - 2.5900 1.00 1728 147 0.2500 0.3053 REMARK 3 9 2.5900 - 2.4900 1.00 1712 161 0.2511 0.3081 REMARK 3 10 2.4900 - 2.4000 1.00 1739 131 0.2767 0.3189 REMARK 3 11 2.4000 - 2.3300 1.00 1745 139 0.2834 0.3384 REMARK 3 12 2.3300 - 2.2600 1.00 1715 155 0.3028 0.3017 REMARK 3 13 2.2600 - 2.2000 0.99 1717 157 0.3317 0.3337 REMARK 3 14 2.2000 - 2.1500 0.99 1711 146 0.3605 0.3425 REMARK 3 15 2.1500 - 2.1000 0.99 1707 138 0.4081 0.4631 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.321 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.147 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 57.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3317 REMARK 3 ANGLE : 0.800 4512 REMARK 3 CHIRALITY : 0.054 527 REMARK 3 PLANARITY : 0.006 576 REMARK 3 DIHEDRAL : 12.867 1142 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 28 THROUGH 280 ) REMARK 3 ORIGIN FOR THE GROUP (A): 72.0502 8.0883 38.9103 REMARK 3 T TENSOR REMARK 3 T11: 0.3896 T22: 0.5105 REMARK 3 T33: 0.5040 T12: 0.0304 REMARK 3 T13: 0.0160 T23: -0.0153 REMARK 3 L TENSOR REMARK 3 L11: 2.7961 L22: 1.3661 REMARK 3 L33: 2.0449 L12: 0.1050 REMARK 3 L13: 1.6324 L23: 0.5287 REMARK 3 S TENSOR REMARK 3 S11: -0.1427 S12: 0.3521 S13: 0.0741 REMARK 3 S21: -0.0314 S22: 0.1046 S23: -0.2709 REMARK 3 S31: -0.1113 S32: 0.4223 S33: 0.0247 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 281 THROUGH 416 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.5515 9.2391 30.3543 REMARK 3 T TENSOR REMARK 3 T11: 0.3593 T22: 0.3968 REMARK 3 T33: 0.4272 T12: 0.0169 REMARK 3 T13: -0.0222 T23: -0.1202 REMARK 3 L TENSOR REMARK 3 L11: 2.8406 L22: 4.7638 REMARK 3 L33: 5.7440 L12: -0.1344 REMARK 3 L13: 0.8861 L23: -2.6205 REMARK 3 S TENSOR REMARK 3 S11: -0.0076 S12: 0.1124 S13: 0.2663 REMARK 3 S21: -0.1087 S22: 0.0866 S23: -0.0053 REMARK 3 S31: -0.4525 S32: 0.0636 S33: -0.1226 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 417 THROUGH 544 ) REMARK 3 ORIGIN FOR THE GROUP (A): 77.2849 -0.7113 46.5485 REMARK 3 T TENSOR REMARK 3 T11: 0.3953 T22: 0.5957 REMARK 3 T33: 0.5826 T12: 0.0762 REMARK 3 T13: -0.1067 T23: -0.0185 REMARK 3 L TENSOR REMARK 3 L11: 4.8863 L22: 3.3877 REMARK 3 L33: 3.6397 L12: 0.6155 REMARK 3 L13: 0.6944 L23: -0.8794 REMARK 3 S TENSOR REMARK 3 S11: 0.0244 S12: -0.0812 S13: -0.2079 REMARK 3 S21: 0.2497 S22: -0.1013 S23: -0.8324 REMARK 3 S31: 0.1244 S32: 0.7852 S33: 0.0644 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 545 THROUGH 573 ) REMARK 3 ORIGIN FOR THE GROUP (A): 61.6045 -4.2994 46.0143 REMARK 3 T TENSOR REMARK 3 T11: 0.5235 T22: 0.4475 REMARK 3 T33: 0.3743 T12: 0.0170 REMARK 3 T13: -0.0343 T23: 0.0883 REMARK 3 L TENSOR REMARK 3 L11: 6.7582 L22: 8.7137 REMARK 3 L33: 3.3543 L12: 3.0290 REMARK 3 L13: 2.2352 L23: 1.1415 REMARK 3 S TENSOR REMARK 3 S11: -0.1600 S12: -0.1724 S13: -0.4781 REMARK 3 S21: 0.7765 S22: 0.1139 S23: 0.1365 REMARK 3 S31: 0.6437 S32: -0.1972 S33: 0.0026 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7RY7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1000259229. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28381 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.950 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.59 REMARK 200 R MERGE FOR SHELL (I) : 1.20400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.110 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MR-ROSETTA REMARK 200 STARTING MODEL: PDB ENTRY 3PSG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RIGAKUREAGENTS JCSG A7 OPTIMIZATION REMARK 280 SCREEN: 100MM TRIS HCL / NAOH PH 9.4, 17.86% PEG 8000: REMARK 280 PLFAA.17789.B.HE11.PD38363 AT 11.4MG/ML: CRYO: 20% EG: TRAY: REMARK 280 3908603 D3: PUCK QPU2-2, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 96.15000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.44000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 96.15000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.44000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 186.81551 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 99.68925 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 69 REMARK 465 ASN A 70 REMARK 465 GLU A 217 REMARK 465 LYS A 218 REMARK 465 ASN A 219 REMARK 465 PHE A 220 REMARK 465 LEU A 221 REMARK 465 GLU A 222 REMARK 465 ASN A 223 REMARK 465 LYS A 224 REMARK 465 HIS A 308 REMARK 465 ILE A 309 REMARK 465 VAL A 310 REMARK 465 PHE A 311 REMARK 465 GLY A 312 REMARK 465 SER A 313 REMARK 465 GLY A 314 REMARK 465 SER A 315 REMARK 465 GLU A 343 REMARK 465 SER A 344 REMARK 465 ASN A 345 REMARK 465 ASN A 346 REMARK 465 ASN A 347 REMARK 465 LYS A 348 REMARK 465 ASN A 349 REMARK 465 GLY A 350 REMARK 465 GLY A 351 REMARK 465 ASP A 352 REMARK 465 GLU A 574 REMARK 465 ASN A 575 REMARK 465 LEU A 576 REMARK 465 TYR A 577 REMARK 465 PHE A 578 REMARK 465 GLN A 579 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 28 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 35 CG CD CE NZ REMARK 470 HIS A 43 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 54 CG CD OE1 OE2 REMARK 470 LYS A 56 CG CD CE NZ REMARK 470 LYS A 68 CG CD CE NZ REMARK 470 ASP A 73 CG OD1 OD2 REMARK 470 LYS A 75 CG CD CE NZ REMARK 470 LYS A 76 CG CD CE NZ REMARK 470 GLN A 78 CG CD OE1 NE2 REMARK 470 LYS A 79 CG CD CE NZ REMARK 470 GLU A 82 CG CD OE1 OE2 REMARK 470 LYS A 85 CG CD CE NZ REMARK 470 ASP A 112 CG OD1 OD2 REMARK 470 GLU A 119 CG CD OE1 OE2 REMARK 470 LYS A 123 CG CD CE NZ REMARK 470 LYS A 124 CG CD CE NZ REMARK 470 ASN A 127 CG OD1 ND2 REMARK 470 GLN A 129 CG CD OE1 NE2 REMARK 470 LEU A 130 CG CD1 CD2 REMARK 470 ASP A 131 CG OD1 OD2 REMARK 470 GLU A 229 CG CD OE1 OE2 REMARK 470 GLN A 230 CG CD OE1 NE2 REMARK 470 LYS A 232 CG CD CE NZ REMARK 470 GLU A 233 CG CD OE1 OE2 REMARK 470 GLU A 280 CG CD OE1 OE2 REMARK 470 GLU A 281 CG CD OE1 OE2 REMARK 470 LYS A 285 CG CD CE NZ REMARK 470 ILE A 303 CG1 CG2 CD1 REMARK 470 GLU A 304 CG CD OE1 OE2 REMARK 470 LYS A 305 CG CD CE NZ REMARK 470 ASN A 306 CG OD1 ND2 REMARK 470 LEU A 307 CG CD1 CD2 REMARK 470 GLU A 341 CG CD OE1 OE2 REMARK 470 ASN A 353 CG OD1 ND2 REMARK 470 TYR A 357 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 MET A 371 CG SD CE REMARK 470 LEU A 372 CG CD1 CD2 REMARK 470 ASP A 402 CG OD1 OD2 REMARK 470 LYS A 404 CG CD CE NZ REMARK 470 LYS A 443 CG CD CE NZ REMARK 470 GLU A 450 CG CD OE1 OE2 REMARK 470 LYS A 471 CG CD CE NZ REMARK 470 GLU A 484 CG CD OE1 OE2 REMARK 470 GLN A 485 CG CD OE1 NE2 REMARK 470 ASN A 486 CG OD1 ND2 REMARK 470 LYS A 488 CG CD CE NZ REMARK 470 ASP A 489 CG OD1 OD2 REMARK 470 LYS A 492 CG CD CE NZ REMARK 470 GLU A 511 CG CD OE1 OE2 REMARK 470 ASP A 518 CG OD1 OD2 REMARK 470 ASP A 519 CG OD1 OD2 REMARK 470 GLU A 533 CG CD OE1 OE2 REMARK 470 ARG A 534 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 547 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 558 CG CD OE1 OE2 REMARK 470 LYS A 570 CG CD CE NZ REMARK 470 LYS A 572 CG CD CE NZ REMARK 470 ASN A 573 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 43 -74.49 -79.83 REMARK 500 ASN A 72 36.72 70.43 REMARK 500 ASP A 245 27.83 -143.85 REMARK 500 CYS A 279 103.64 -168.54 REMARK 500 SER A 430 -74.26 -153.30 REMARK 500 CYS A 447 146.27 -172.31 REMARK 500 THR A 483 -118.67 52.37 REMARK 500 GLU A 484 -28.70 -152.79 REMARK 500 ASP A 518 -119.19 60.82 REMARK 500 SER A 544 -61.70 -104.03 REMARK 500 THR A 557 -154.14 -116.25 REMARK 500 ARG A 560 146.16 -179.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 265 ASP A 266 -148.91 REMARK 500 REMARK 500 REMARK: NULL DBREF 7RY7 A 28 573 UNP Q8IAS0 Q8IAS0_PLAF7 28 573 SEQADV 7RY7 A UNP Q8IAS0 LEU 136 DELETION SEQADV 7RY7 A UNP Q8IAS0 ASP 137 DELETION SEQADV 7RY7 A UNP Q8IAS0 PHE 138 DELETION SEQADV 7RY7 A UNP Q8IAS0 THR 139 DELETION SEQADV 7RY7 A UNP Q8IAS0 THR 140 DELETION SEQADV 7RY7 A UNP Q8IAS0 TYR 141 DELETION SEQADV 7RY7 A UNP Q8IAS0 ASN 142 DELETION SEQADV 7RY7 A UNP Q8IAS0 LYS 143 DELETION SEQADV 7RY7 A UNP Q8IAS0 ASN 144 DELETION SEQADV 7RY7 A UNP Q8IAS0 LYS 145 DELETION SEQADV 7RY7 A UNP Q8IAS0 ALA 146 DELETION SEQADV 7RY7 A UNP Q8IAS0 GLN 147 DELETION SEQADV 7RY7 A UNP Q8IAS0 ASP 148 DELETION SEQADV 7RY7 A UNP Q8IAS0 ILE 149 DELETION SEQADV 7RY7 A UNP Q8IAS0 SER 150 DELETION SEQADV 7RY7 A UNP Q8IAS0 ASP 151 DELETION SEQADV 7RY7 A UNP Q8IAS0 HIS 152 DELETION SEQADV 7RY7 A UNP Q8IAS0 LEU 153 DELETION SEQADV 7RY7 A UNP Q8IAS0 SER 154 DELETION SEQADV 7RY7 A UNP Q8IAS0 ASP 155 DELETION SEQADV 7RY7 A UNP Q8IAS0 ILE 156 DELETION SEQADV 7RY7 A UNP Q8IAS0 GLN 157 DELETION SEQADV 7RY7 A UNP Q8IAS0 LYS 158 DELETION SEQADV 7RY7 A UNP Q8IAS0 HIS 159 DELETION SEQADV 7RY7 A UNP Q8IAS0 VAL 160 DELETION SEQADV 7RY7 A UNP Q8IAS0 TYR 161 DELETION SEQADV 7RY7 A UNP Q8IAS0 GLU 162 DELETION SEQADV 7RY7 A UNP Q8IAS0 GLN 163 DELETION SEQADV 7RY7 A UNP Q8IAS0 ASP 164 DELETION SEQADV 7RY7 A UNP Q8IAS0 ALA 165 DELETION SEQADV 7RY7 A UNP Q8IAS0 GLN 166 DELETION SEQADV 7RY7 A UNP Q8IAS0 LYS 167 DELETION SEQADV 7RY7 A UNP Q8IAS0 GLY 168 DELETION SEQADV 7RY7 A UNP Q8IAS0 ASN 169 DELETION SEQADV 7RY7 A UNP Q8IAS0 LYS 170 DELETION SEQADV 7RY7 A UNP Q8IAS0 ASN 171 DELETION SEQADV 7RY7 A UNP Q8IAS0 PHE 172 DELETION SEQADV 7RY7 A UNP Q8IAS0 THR 173 DELETION SEQADV 7RY7 A UNP Q8IAS0 ASN 174 DELETION SEQADV 7RY7 A UNP Q8IAS0 ASN 175 DELETION SEQADV 7RY7 A UNP Q8IAS0 GLU 176 DELETION SEQADV 7RY7 A UNP Q8IAS0 ASN 177 DELETION SEQADV 7RY7 A UNP Q8IAS0 ASN 178 DELETION SEQADV 7RY7 A UNP Q8IAS0 SER 179 DELETION SEQADV 7RY7 A UNP Q8IAS0 ASP 180 DELETION SEQADV 7RY7 A UNP Q8IAS0 ASN 181 DELETION SEQADV 7RY7 A UNP Q8IAS0 GLU 182 DELETION SEQADV 7RY7 A UNP Q8IAS0 ASN 183 DELETION SEQADV 7RY7 A UNP Q8IAS0 ASN 184 DELETION SEQADV 7RY7 A UNP Q8IAS0 SER 185 DELETION SEQADV 7RY7 A UNP Q8IAS0 ASP 186 DELETION SEQADV 7RY7 A UNP Q8IAS0 ASN 187 DELETION SEQADV 7RY7 A UNP Q8IAS0 GLU 188 DELETION SEQADV 7RY7 A UNP Q8IAS0 ASN 189 DELETION SEQADV 7RY7 A UNP Q8IAS0 ASN 190 DELETION SEQADV 7RY7 A UNP Q8IAS0 SER 191 DELETION SEQADV 7RY7 A UNP Q8IAS0 ASP 192 DELETION SEQADV 7RY7 A UNP Q8IAS0 ASN 193 DELETION SEQADV 7RY7 A UNP Q8IAS0 GLU 194 DELETION SEQADV 7RY7 A UNP Q8IAS0 ASN 195 DELETION SEQADV 7RY7 A UNP Q8IAS0 ASN 196 DELETION SEQADV 7RY7 A UNP Q8IAS0 LEU 197 DELETION SEQADV 7RY7 A UNP Q8IAS0 ASP 198 DELETION SEQADV 7RY7 A UNP Q8IAS0 ASN 199 DELETION SEQADV 7RY7 A UNP Q8IAS0 GLU 200 DELETION SEQADV 7RY7 A UNP Q8IAS0 ASN 201 DELETION SEQADV 7RY7 A UNP Q8IAS0 ASN 202 DELETION SEQADV 7RY7 A UNP Q8IAS0 LEU 203 DELETION SEQADV 7RY7 A UNP Q8IAS0 ASP 204 DELETION SEQADV 7RY7 A UNP Q8IAS0 ASN 205 DELETION SEQADV 7RY7 A UNP Q8IAS0 GLU 206 DELETION SEQADV 7RY7 A UNP Q8IAS0 ASN 207 DELETION SEQADV 7RY7 A UNP Q8IAS0 ASN 208 DELETION SEQADV 7RY7 A UNP Q8IAS0 SER 209 DELETION SEQADV 7RY7 A UNP Q8IAS0 ASP 210 DELETION SEQADV 7RY7 A UNP Q8IAS0 ASN 211 DELETION SEQADV 7RY7 A UNP Q8IAS0 SER 212 DELETION SEQADV 7RY7 A UNP Q8IAS0 SER 213 DELETION SEQADV 7RY7 A UNP Q8IAS0 ILE 214 DELETION SEQADV 7RY7 A UNP Q8IAS0 GLU 215 DELETION SEQADV 7RY7 A UNP Q8IAS0 LYS 216 DELETION SEQADV 7RY7 A UNP Q8IAS0 ASN 217 DELETION SEQADV 7RY7 A UNP Q8IAS0 PHE 218 DELETION SEQADV 7RY7 A UNP Q8IAS0 ILE 219 DELETION SEQADV 7RY7 A UNP Q8IAS0 ALA 220 DELETION SEQADV 7RY7 GLU A 574 UNP Q8IAS0 EXPRESSION TAG SEQADV 7RY7 ASN A 575 UNP Q8IAS0 EXPRESSION TAG SEQADV 7RY7 LEU A 576 UNP Q8IAS0 EXPRESSION TAG SEQADV 7RY7 TYR A 577 UNP Q8IAS0 EXPRESSION TAG SEQADV 7RY7 PHE A 578 UNP Q8IAS0 EXPRESSION TAG SEQADV 7RY7 GLN A 579 UNP Q8IAS0 EXPRESSION TAG SEQRES 1 A 467 ARG ILE TYR LYS ILE GLY THR LYS ALA LEU PRO CYS SER SEQRES 2 A 467 GLU CYS HIS ASP VAL PHE ASP CYS THR GLY CYS LEU PHE SEQRES 3 A 467 GLU GLU LYS GLU SER SER HIS VAL ILE PRO LEU LYS LEU SEQRES 4 A 467 ASN LYS LYS ASN PRO ASN ASP HIS LYS LYS LEU GLN LYS SEQRES 5 A 467 HIS HIS GLU SER LEU LYS LEU GLY ASP VAL LYS TYR TYR SEQRES 6 A 467 VAL ASN ARG GLY GLU GLY ILE SER GLY SER LEU GLY THR SEQRES 7 A 467 SER SER GLY ASN THR LEU ASP ASP MET ASP LEU ILE ASN SEQRES 8 A 467 GLU GLU ILE ASN LYS LYS ARG THR ASN ALA GLN LEU ASP SEQRES 9 A 467 GLU LYS ASN PHE LEU GLU ASN LYS ASN ALA THR VAL GLU SEQRES 10 A 467 GLN THR LYS GLU ASN ILE PHE LEU VAL PRO LEU LYS HIS SEQRES 11 A 467 LEU ARG ASP SER GLN PHE VAL GLY GLU LEU LEU VAL GLY SEQRES 12 A 467 THR PRO PRO GLN THR VAL TYR PRO ILE PHE ASP THR GLY SEQRES 13 A 467 SER THR ASN VAL TRP VAL VAL THR THR ALA CYS GLU GLU SEQRES 14 A 467 GLU SER CYS LYS LYS VAL ARG ARG TYR ASP PRO ASN LYS SEQRES 15 A 467 SER LYS THR PHE ARG ARG SER PHE ILE GLU LYS ASN LEU SEQRES 16 A 467 HIS ILE VAL PHE GLY SER GLY SER ILE SER GLY SER VAL SEQRES 17 A 467 GLY THR ASP THR PHE MET LEU GLY LYS HIS LEU VAL ARG SEQRES 18 A 467 ASN GLN THR PHE GLY LEU VAL GLU SER GLU SER ASN ASN SEQRES 19 A 467 ASN LYS ASN GLY GLY ASP ASN ILE PHE ASP TYR ILE SER SEQRES 20 A 467 PHE GLU GLY ILE VAL GLY LEU GLY PHE PRO GLY MET LEU SEQRES 21 A 467 SER ALA GLY ASN ILE PRO PHE PHE ASP ASN LEU LEU LYS SEQRES 22 A 467 GLN ASN PRO ASN VAL ASP PRO GLN PHE SER PHE TYR ILE SEQRES 23 A 467 SER PRO TYR ASP GLY LYS SER THR LEU ILE ILE GLY GLY SEQRES 24 A 467 ILE SER LYS SER PHE TYR GLU GLY ASP ILE TYR MET LEU SEQRES 25 A 467 PRO VAL LEU LYS GLU SER TYR TRP GLU VAL LYS LEU ASP SEQRES 26 A 467 GLU LEU TYR ILE GLY LYS GLU ARG ILE CYS CYS ASP GLU SEQRES 27 A 467 GLU SER TYR VAL ILE PHE ASP THR GLY THR SER TYR ASN SEQRES 28 A 467 THR MET PRO SER SER GLN MET LYS THR PHE LEU ASN LEU SEQRES 29 A 467 ILE HIS SER THR ALA CYS THR GLU GLN ASN TYR LYS ASP SEQRES 30 A 467 ILE LEU LYS SER TYR PRO ILE ILE LYS TYR VAL PHE GLY SEQRES 31 A 467 GLU LEU ILE ILE GLU LEU HIS PRO GLU GLU TYR MET ILE SEQRES 32 A 467 LEU ASN ASP ASP VAL CYS MET PRO ALA TYR MET GLN ILE SEQRES 33 A 467 ASP VAL PRO SER GLU ARG ASN HIS ALA TYR LEU LEU GLY SEQRES 34 A 467 SER LEU SER PHE MET ARG ASN PHE PHE THR VAL PHE VAL SEQRES 35 A 467 ARG GLY THR GLU SER ARG PRO SER MET VAL GLY VAL ALA SEQRES 36 A 467 ARG ALA LYS SER LYS ASN GLU ASN LEU TYR PHE GLN HET NAG A 601 14 HET EDO A 602 4 HET EDO A 603 4 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NAG C8 H15 N O6 FORMUL 3 EDO 2(C2 H6 O2) FORMUL 5 HOH *60(H2 O) HELIX 1 AA1 PRO A 38 CYS A 42 5 5 HELIX 2 AA2 HIS A 74 SER A 83 1 10 HELIX 3 AA3 GLY A 98 SER A 102 5 5 HELIX 4 AA4 THR A 110 ASP A 112 5 3 HELIX 5 AA5 ASP A 113 GLN A 129 1 17 HELIX 6 AA6 ASP A 291 SER A 295 5 5 HELIX 7 AA7 ASN A 353 TYR A 357 5 5 HELIX 8 AA8 PRO A 378 ASN A 387 1 10 HELIX 9 AA9 SER A 413 SER A 415 5 3 HELIX 10 AB1 PRO A 466 ILE A 477 1 12 HELIX 11 AB2 ASN A 486 LEU A 491 1 6 HELIX 12 AB3 LYS A 492 TYR A 494 5 3 HELIX 13 AB4 HIS A 509 TYR A 513 1 5 HELIX 14 AB5 SER A 544 ASN A 548 1 5 SHEET 1 AA1 5 ILE A 29 LYS A 31 0 SHEET 2 AA1 5 LEU A 504 LEU A 508 -1 O ILE A 505 N TYR A 30 SHEET 3 AA1 5 ILE A 497 PHE A 501 -1 N TYR A 499 O ILE A 506 SHEET 4 AA1 5 GLU A 438 ILE A 441 -1 N TYR A 440 O LYS A 498 SHEET 5 AA1 5 GLU A 444 CYS A 447 -1 O ILE A 446 N LEU A 439 SHEET 1 AA2 7 PHE A 248 GLY A 250 0 SHEET 2 AA2 7 HIS A 60 LEU A 66 -1 N LYS A 65 O VAL A 249 SHEET 3 AA2 7 THR A 406 ILE A 409 -1 O ILE A 409 N HIS A 60 SHEET 4 AA2 7 GLN A 393 TYR A 397 -1 N TYR A 397 O THR A 406 SHEET 5 AA2 7 PHE A 549 VAL A 554 -1 O PHE A 553 N PHE A 394 SHEET 6 AA2 7 MET A 563 ALA A 569 -1 O GLY A 565 N VAL A 552 SHEET 7 AA2 7 TYR A 417 PRO A 425 -1 N LEU A 424 O VAL A 564 SHEET 1 AA3 2 VAL A 89 TYR A 92 0 SHEET 2 AA3 2 PHE A 236 PRO A 239 1 O VAL A 238 N LYS A 90 SHEET 1 AA4 7 GLN A 259 VAL A 261 0 SHEET 2 AA4 7 LEU A 252 VAL A 254 -1 N LEU A 252 O VAL A 261 SHEET 3 AA4 7 SER A 317 LEU A 327 -1 O MET A 326 N LEU A 253 SHEET 4 AA4 7 HIS A 330 GLU A 341 -1 O LEU A 339 N SER A 319 SHEET 5 AA4 7 VAL A 272 VAL A 275 1 N VAL A 272 O GLY A 338 SHEET 6 AA4 7 GLY A 362 GLY A 365 -1 O ILE A 363 N TRP A 273 SHEET 7 AA4 7 ILE A 264 ASP A 266 1 N ILE A 264 O VAL A 364 SHEET 1 AA5 4 GLN A 259 VAL A 261 0 SHEET 2 AA5 4 LEU A 252 VAL A 254 -1 N LEU A 252 O VAL A 261 SHEET 3 AA5 4 SER A 317 LEU A 327 -1 O MET A 326 N LEU A 253 SHEET 4 AA5 4 ARG A 299 ARG A 300 -1 N ARG A 299 O THR A 322 SHEET 1 AA6 3 GLU A 433 LEU A 436 0 SHEET 2 AA6 3 SER A 452 PHE A 456 -1 O VAL A 454 N VAL A 434 SHEET 3 AA6 3 HIS A 536 LEU A 540 1 O TYR A 538 N ILE A 455 SHEET 1 AA7 2 ASN A 463 MET A 465 0 SHEET 2 AA7 2 TYR A 525 GLN A 527 1 O MET A 526 N ASN A 463 SHEET 1 AA8 3 THR A 480 ALA A 481 0 SHEET 2 AA8 3 VAL A 520 PRO A 523 -1 O CYS A 521 N THR A 480 SHEET 3 AA8 3 MET A 514 ASN A 517 -1 N ILE A 515 O MET A 522 SSBOND 1 CYS A 39 CYS A 51 1555 1555 2.03 SSBOND 2 CYS A 42 CYS A 48 1555 1555 2.04 SSBOND 3 CYS A 279 CYS A 284 1555 1555 2.04 SSBOND 4 CYS A 447 CYS A 448 1555 1555 2.05 SSBOND 5 CYS A 482 CYS A 521 1555 1555 2.03 LINK ND2 ASN A 334 C1 NAG A 601 1555 1555 1.45 CISPEP 1 THR A 256 PRO A 257 0 -9.29 CISPEP 2 CYS A 447 CYS A 448 0 3.70 CRYST1 192.300 50.880 49.920 90.00 93.15 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005200 0.000000 0.000286 0.00000 SCALE2 0.000000 0.019654 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020062 0.00000