HEADER DNA BINDING PROTEIN/DNA 28-AUG-21 7S03 TITLE DNA-BINDING DOMAIN OF HUMAN SETMAR IN COMPLEX WITH HSMAR1 TERMINAL TITLE 2 INVERTED REPEAT (TIR) DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DNA-BINDING DOMAIN (UNP RESIDUES 343-453); COMPND 5 SYNONYM: SET DOMAIN AND MARINER TRANSPOSASE FUSION PROTEIN,METNASE; COMPND 6 EC: 2.1.1.357,3.1.-.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: HSMAR1 TERMINAL INVERTED REPEATS; COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: HSMAR1 TERMINAL INVERTED REPEATS; COMPND 15 CHAIN: C; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SETMAR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 16 ORGANISM_COMMON: HUMAN; SOURCE 17 ORGANISM_TAXID: 9606 KEYWDS SETMAR, DNA-BINDING DOMAIN, HSMAR1, HELIX-TURN-HELIX, HTH, TERMINAL KEYWDS 2 INVERTED REPEAT, TIR, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Q.CHEN,M.M.GEORGIADIS REVDAT 1 03-AUG-22 7S03 0 JRNL AUTH Q.CHEN,A.M.BATES,J.N.HANQUIER,E.SIMPSON,D.B.RUSCH, JRNL AUTH 2 R.PODICHETI,Y.LIU,R.C.WEK,E.M.CORNETT,M.M.GEORGIADIS JRNL TITL STRUCTURAL AND GENOME-WIDE ANALYSES SUGGEST THAT JRNL TITL 2 TRANSPOSON-DERIVED PROTEIN SETMAR ALTERS TRANSCRIPTION AND JRNL TITL 3 SPLICING. JRNL REF J.BIOL.CHEM. V. 298 01894 2022 JRNL REFN ESSN 1083-351X JRNL PMID 35378129 JRNL DOI 10.1016/J.JBC.2022.101894 REMARK 2 REMARK 2 RESOLUTION. 2.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 16176 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 813 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.010 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.37 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.53 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.68 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2844 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2400 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2681 REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE : 0.2740 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.73 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 163 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 884 REMARK 3 NUCLEIC ACID ATOMS : 1060 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 13 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 71.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 82.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -9.52600 REMARK 3 B22 (A**2) : 15.31350 REMARK 3 B33 (A**2) : -5.78760 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.000 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.248 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.194 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.239 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.191 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2086 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3033 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 600 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 29 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 179 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2086 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 272 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 1965 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.96 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.87 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 24.83 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|330 - A|396 } REMARK 3 ORIGIN FOR THE GROUP (A): 8.7352 20.6483 -12.8291 REMARK 3 T TENSOR REMARK 3 T11: -0.0977 T22: -0.0398 REMARK 3 T33: -0.0776 T12: -0.0151 REMARK 3 T13: 0.0655 T23: 0.0103 REMARK 3 L TENSOR REMARK 3 L11: 2.5393 L22: 3.3245 REMARK 3 L33: 1.2463 L12: 1.6168 REMARK 3 L13: 0.3977 L23: 0.0750 REMARK 3 S TENSOR REMARK 3 S11: 0.1001 S12: -0.2439 S13: 0.0745 REMARK 3 S21: 0.0543 S22: -0.2154 S23: -0.0703 REMARK 3 S31: -0.2264 S32: 0.0740 S33: 0.1153 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|397 - A|437 } REMARK 3 ORIGIN FOR THE GROUP (A): 17.9850 63.1790 -3.9414 REMARK 3 T TENSOR REMARK 3 T11: 0.0002 T22: -0.0323 REMARK 3 T33: 0.0156 T12: -0.0955 REMARK 3 T13: -0.1520 T23: -0.0727 REMARK 3 L TENSOR REMARK 3 L11: 4.7799 L22: 5.8199 REMARK 3 L33: 8.3154 L12: -1.7783 REMARK 3 L13: 2.9104 L23: 1.4052 REMARK 3 S TENSOR REMARK 3 S11: -0.0677 S12: -0.3628 S13: 0.3491 REMARK 3 S21: -0.4525 S22: -0.0715 S23: 0.2107 REMARK 3 S31: 0.1393 S32: -0.5359 S33: 0.1392 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { B|1 - B|15 C|11 - C|26 } REMARK 3 ORIGIN FOR THE GROUP (A): 22.2250 25.1638 -10.6774 REMARK 3 T TENSOR REMARK 3 T11: -0.2111 T22: -0.1147 REMARK 3 T33: -0.0951 T12: -0.0988 REMARK 3 T13: 0.0580 T23: 0.0411 REMARK 3 L TENSOR REMARK 3 L11: 1.6649 L22: 7.0537 REMARK 3 L33: 1.9207 L12: 0.2954 REMARK 3 L13: 0.6906 L23: 0.0918 REMARK 3 S TENSOR REMARK 3 S11: 0.0470 S12: -0.0478 S13: -0.0772 REMARK 3 S21: -0.0850 S22: -0.2443 S23: -0.5442 REMARK 3 S31: -0.2932 S32: 0.3592 S33: 0.1973 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { C|1 - C|10 B|16 - B|26 } REMARK 3 ORIGIN FOR THE GROUP (A): 14.9389 65.8474 -19.4279 REMARK 3 T TENSOR REMARK 3 T11: 0.3040 T22: -0.2218 REMARK 3 T33: 0.0714 T12: -0.1171 REMARK 3 T13: -0.1520 T23: 0.0733 REMARK 3 L TENSOR REMARK 3 L11: 4.7753 L22: 6.2427 REMARK 3 L33: 8.2205 L12: -2.9104 REMARK 3 L13: 2.9104 L23: -2.8814 REMARK 3 S TENSOR REMARK 3 S11: 0.0766 S12: 0.3168 S13: 0.5442 REMARK 3 S21: -0.2837 S22: -0.2169 S23: 0.1917 REMARK 3 S31: 0.0924 S32: -0.2470 S33: 0.1403 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7S03 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1000259338. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97938 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16176 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.370 REMARK 200 RESOLUTION RANGE LOW (A) : 27.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.45900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MAGNESIUM FORMATE, 15% PEG3350, REMARK 280 PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.02600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.02600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.48900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 83.08600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.48900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 83.08600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.02600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.48900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 83.08600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 33.02600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.48900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 83.08600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -70.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -33.02600 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 328 REMARK 465 MSE A 329 REMARK 465 GLY A 438 REMARK 465 LYS A 439 REMARK 465 VAL A 440 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC B 12 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DT B 13 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DC B 20 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DT C 4 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC C 9 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG C 14 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DT C 19 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 411 85.04 -153.41 REMARK 500 REMARK 500 REMARK: NULL DBREF 7S03 A 330 440 UNP Q53H47 SETMR_HUMAN 343 453 DBREF 7S03 B 1 26 PDB 7S03 7S03 1 26 DBREF 7S03 C 1 26 PDB 7S03 7S03 1 26 SEQADV 7S03 SER A 328 UNP Q53H47 EXPRESSION TAG SEQADV 7S03 MSE A 329 UNP Q53H47 EXPRESSION TAG SEQADV 7S03 MSE A 359 UNP Q53H47 ILE 372 ENGINEERED MUTATION SEQADV 7S03 ARG A 381 UNP Q53H47 CYS 394 ENGINEERED MUTATION SEQADV 7S03 MSE A 423 UNP Q53H47 LEU 436 ENGINEERED MUTATION SEQRES 1 A 113 SER MSE LYS MSE MSE LEU ASP LYS LYS GLN ILE ARG ALA SEQRES 2 A 113 ILE PHE LEU PHE GLU PHE LYS MSE GLY ARG LYS ALA ALA SEQRES 3 A 113 GLU THR THR ARG ASN MSE ASN ASN ALA PHE GLY PRO GLY SEQRES 4 A 113 THR ALA ASN GLU ARG THR VAL GLN TRP TRP PHE LYS LYS SEQRES 5 A 113 PHE ARG LYS GLY ASP GLU SER LEU GLU ASP GLU GLU ARG SEQRES 6 A 113 SER GLY ARG PRO SER GLU VAL ASP ASN ASP GLN LEU ARG SEQRES 7 A 113 ALA ILE ILE GLU ALA ASP PRO LEU THR THR THR ARG GLU SEQRES 8 A 113 VAL ALA GLU GLU MSE ASN VAL ASN HIS SER THR VAL VAL SEQRES 9 A 113 ARG HIS LEU LYS GLN ILE GLY LYS VAL SEQRES 1 B 26 DA DA DC DC DG DC DA DA DT DT DA DC DT SEQRES 2 B 26 DT DT DT DG DC DA DC DC DA DA DC DC DT SEQRES 1 C 26 DG DG DT DT DG DG DT DG DC DA DA DA DA SEQRES 2 C 26 DG DT DA DA DT DT DG DC DG DG DT DT DA MODRES 7S03 MSE A 331 MET MODIFIED RESIDUE MODRES 7S03 MSE A 332 MET MODIFIED RESIDUE MODRES 7S03 MSE A 348 MET MODIFIED RESIDUE HET MSE A 331 8 HET MSE A 332 8 HET MSE A 348 8 HET MSE A 359 8 HET MSE A 423 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 4 HOH *13(H2 O) HELIX 1 AA1 ASP A 334 MSE A 348 1 15 HELIX 2 AA2 LYS A 351 GLY A 364 1 14 HELIX 3 AA3 ASN A 369 LYS A 382 1 14 HELIX 4 AA4 ASP A 400 ASP A 411 1 12 HELIX 5 AA5 THR A 415 ASN A 424 1 10 HELIX 6 AA6 ASN A 426 ILE A 437 1 12 LINK C LYS A 330 N MSE A 331 1555 1555 1.36 LINK C MSE A 331 N MSE A 332 1555 1555 1.35 LINK C MSE A 332 N LEU A 333 1555 1555 1.35 LINK C LYS A 347 N MSE A 348 1555 1555 1.35 LINK C MSE A 348 N GLY A 349 1555 1555 1.34 LINK C ASN A 358 N MSE A 359 1555 1555 1.32 LINK C MSE A 359 N ASN A 360 1555 1555 1.34 LINK C GLU A 422 N MSE A 423 1555 1555 1.35 LINK C MSE A 423 N ASN A 424 1555 1555 1.35 CRYST1 70.978 166.172 66.052 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014089 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006018 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015140 0.00000