data_7S15 # _entry.id 7S15 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.359 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7S15 pdb_00007s15 10.2210/pdb7s15/pdb WWPDB D_1000257997 ? ? EMDB EMD-24794 ? ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'GLP-1 receptor bound with Pfizer small molecule agonist' _pdbx_database_related.db_id EMD-24794 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7S15 _pdbx_database_status.recvd_initial_deposition_date 2021-09-01 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Liu, Y.' 1 0000-0001-6844-7480 'Dias, J.M.' 2 0000-0003-3336-2334 'Han, S.' 3 0000-0002-1070-3880 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Med.Chem. _citation.journal_id_ASTM JMCMAR _citation.journal_id_CSD 0151 _citation.journal_id_ISSN 0022-2623 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 65 _citation.language ? _citation.page_first 8208 _citation.page_last 8226 _citation.title 'A Small-Molecule Oral Agonist of the Human Glucagon-like Peptide-1 Receptor.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acs.jmedchem.1c01856 _citation.pdbx_database_id_PubMed 35647711 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Griffith, D.A.' 1 ? primary 'Edmonds, D.J.' 2 ? primary 'Fortin, J.P.' 3 ? primary 'Kalgutkar, A.S.' 4 ? primary 'Kuzmiski, J.B.' 5 ? primary 'Loria, P.M.' 6 ? primary 'Saxena, A.R.' 7 ? primary 'Bagley, S.W.' 8 ? primary 'Buckeridge, C.' 9 ? primary 'Curto, J.M.' 10 ? primary 'Derksen, D.R.' 11 ? primary 'Dias, J.M.' 12 ? primary 'Griffor, M.C.' 13 ? primary 'Han, S.' 14 ? primary 'Jackson, V.M.' 15 ? primary 'Landis, M.S.' 16 ? primary 'Lettiere, D.' 17 ? primary 'Limberakis, C.' 18 ? primary 'Liu, Y.' 19 ? primary 'Mathiowetz, A.M.' 20 ? primary 'Patel, J.C.' 21 ? primary 'Piotrowski, D.W.' 22 ? primary 'Price, D.A.' 23 ? primary 'Ruggeri, R.B.' 24 ? primary 'Tess, D.A.' 25 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7S15 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7S15 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Glucagon-like peptide 1 receptor' 46701.004 1 ? 'I146Y, A208R, Q213E, S219R, L260A, Y291A, L339E, K346Q' ? ? 2 non-polymer syn ;2-[(4-{6-[(2,4-difluorophenyl)methoxy]pyridin-2-yl}piperidin-1-yl)methyl]-1-[(1-ethyl-1H-imidazol-5-yl)methyl]-1H-benzimidazole-6-carboxylic acid ; 586.632 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'GLP-1 receptor,GLP-1-R,GLP-1R' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;RPQGATVSLWETVQKWREYRRQCQRSLTEDPPPATDLFCNRTFDEYACWPDGEPGSFVNVSCPWYLPWASSVPQGHVYRF CTAEGLWLQKDNSSLPWRDLSECEESKRGERSSPEEQLLFLYYIYTVGYALSFSALVIASAILLGFRHLHCTRNYIHLNL FASFILRALSVFIKDAALKWMYSTRAQQHEWDGLLRYQDSLSCRLVFLLMQYCVAANYYWLLVEGVYLYTLLAFSVASEQ WIFRLYVSIGWGVPLLFVVPWGIVKYLAEDEGCWTRNSNMNYWLIIRLPILFAIGVNFLIFVRVICIVVSKLKANEMCKT DIQCRLAKSTLTLIPLLGTHEVIFAFVMDEHARGTLRFIKLFTELSFTSFQGLMVAILYCFVNNEVQLEFRKSWERWRL ; _entity_poly.pdbx_seq_one_letter_code_can ;RPQGATVSLWETVQKWREYRRQCQRSLTEDPPPATDLFCNRTFDEYACWPDGEPGSFVNVSCPWYLPWASSVPQGHVYRF CTAEGLWLQKDNSSLPWRDLSECEESKRGERSSPEEQLLFLYYIYTVGYALSFSALVIASAILLGFRHLHCTRNYIHLNL FASFILRALSVFIKDAALKWMYSTRAQQHEWDGLLRYQDSLSCRLVFLLMQYCVAANYYWLLVEGVYLYTLLAFSVASEQ WIFRLYVSIGWGVPLLFVVPWGIVKYLAEDEGCWTRNSNMNYWLIIRLPILFAIGVNFLIFVRVICIVVSKLKANEMCKT DIQCRLAKSTLTLIPLLGTHEVIFAFVMDEHARGTLRFIKLFTELSFTSFQGLMVAILYCFVNNEVQLEFRKSWERWRL ; _entity_poly.pdbx_strand_id R _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ARG n 1 2 PRO n 1 3 GLN n 1 4 GLY n 1 5 ALA n 1 6 THR n 1 7 VAL n 1 8 SER n 1 9 LEU n 1 10 TRP n 1 11 GLU n 1 12 THR n 1 13 VAL n 1 14 GLN n 1 15 LYS n 1 16 TRP n 1 17 ARG n 1 18 GLU n 1 19 TYR n 1 20 ARG n 1 21 ARG n 1 22 GLN n 1 23 CYS n 1 24 GLN n 1 25 ARG n 1 26 SER n 1 27 LEU n 1 28 THR n 1 29 GLU n 1 30 ASP n 1 31 PRO n 1 32 PRO n 1 33 PRO n 1 34 ALA n 1 35 THR n 1 36 ASP n 1 37 LEU n 1 38 PHE n 1 39 CYS n 1 40 ASN n 1 41 ARG n 1 42 THR n 1 43 PHE n 1 44 ASP n 1 45 GLU n 1 46 TYR n 1 47 ALA n 1 48 CYS n 1 49 TRP n 1 50 PRO n 1 51 ASP n 1 52 GLY n 1 53 GLU n 1 54 PRO n 1 55 GLY n 1 56 SER n 1 57 PHE n 1 58 VAL n 1 59 ASN n 1 60 VAL n 1 61 SER n 1 62 CYS n 1 63 PRO n 1 64 TRP n 1 65 TYR n 1 66 LEU n 1 67 PRO n 1 68 TRP n 1 69 ALA n 1 70 SER n 1 71 SER n 1 72 VAL n 1 73 PRO n 1 74 GLN n 1 75 GLY n 1 76 HIS n 1 77 VAL n 1 78 TYR n 1 79 ARG n 1 80 PHE n 1 81 CYS n 1 82 THR n 1 83 ALA n 1 84 GLU n 1 85 GLY n 1 86 LEU n 1 87 TRP n 1 88 LEU n 1 89 GLN n 1 90 LYS n 1 91 ASP n 1 92 ASN n 1 93 SER n 1 94 SER n 1 95 LEU n 1 96 PRO n 1 97 TRP n 1 98 ARG n 1 99 ASP n 1 100 LEU n 1 101 SER n 1 102 GLU n 1 103 CYS n 1 104 GLU n 1 105 GLU n 1 106 SER n 1 107 LYS n 1 108 ARG n 1 109 GLY n 1 110 GLU n 1 111 ARG n 1 112 SER n 1 113 SER n 1 114 PRO n 1 115 GLU n 1 116 GLU n 1 117 GLN n 1 118 LEU n 1 119 LEU n 1 120 PHE n 1 121 LEU n 1 122 TYR n 1 123 TYR n 1 124 ILE n 1 125 TYR n 1 126 THR n 1 127 VAL n 1 128 GLY n 1 129 TYR n 1 130 ALA n 1 131 LEU n 1 132 SER n 1 133 PHE n 1 134 SER n 1 135 ALA n 1 136 LEU n 1 137 VAL n 1 138 ILE n 1 139 ALA n 1 140 SER n 1 141 ALA n 1 142 ILE n 1 143 LEU n 1 144 LEU n 1 145 GLY n 1 146 PHE n 1 147 ARG n 1 148 HIS n 1 149 LEU n 1 150 HIS n 1 151 CYS n 1 152 THR n 1 153 ARG n 1 154 ASN n 1 155 TYR n 1 156 ILE n 1 157 HIS n 1 158 LEU n 1 159 ASN n 1 160 LEU n 1 161 PHE n 1 162 ALA n 1 163 SER n 1 164 PHE n 1 165 ILE n 1 166 LEU n 1 167 ARG n 1 168 ALA n 1 169 LEU n 1 170 SER n 1 171 VAL n 1 172 PHE n 1 173 ILE n 1 174 LYS n 1 175 ASP n 1 176 ALA n 1 177 ALA n 1 178 LEU n 1 179 LYS n 1 180 TRP n 1 181 MET n 1 182 TYR n 1 183 SER n 1 184 THR n 1 185 ARG n 1 186 ALA n 1 187 GLN n 1 188 GLN n 1 189 HIS n 1 190 GLU n 1 191 TRP n 1 192 ASP n 1 193 GLY n 1 194 LEU n 1 195 LEU n 1 196 ARG n 1 197 TYR n 1 198 GLN n 1 199 ASP n 1 200 SER n 1 201 LEU n 1 202 SER n 1 203 CYS n 1 204 ARG n 1 205 LEU n 1 206 VAL n 1 207 PHE n 1 208 LEU n 1 209 LEU n 1 210 MET n 1 211 GLN n 1 212 TYR n 1 213 CYS n 1 214 VAL n 1 215 ALA n 1 216 ALA n 1 217 ASN n 1 218 TYR n 1 219 TYR n 1 220 TRP n 1 221 LEU n 1 222 LEU n 1 223 VAL n 1 224 GLU n 1 225 GLY n 1 226 VAL n 1 227 TYR n 1 228 LEU n 1 229 TYR n 1 230 THR n 1 231 LEU n 1 232 LEU n 1 233 ALA n 1 234 PHE n 1 235 SER n 1 236 VAL n 1 237 ALA n 1 238 SER n 1 239 GLU n 1 240 GLN n 1 241 TRP n 1 242 ILE n 1 243 PHE n 1 244 ARG n 1 245 LEU n 1 246 TYR n 1 247 VAL n 1 248 SER n 1 249 ILE n 1 250 GLY n 1 251 TRP n 1 252 GLY n 1 253 VAL n 1 254 PRO n 1 255 LEU n 1 256 LEU n 1 257 PHE n 1 258 VAL n 1 259 VAL n 1 260 PRO n 1 261 TRP n 1 262 GLY n 1 263 ILE n 1 264 VAL n 1 265 LYS n 1 266 TYR n 1 267 LEU n 1 268 ALA n 1 269 GLU n 1 270 ASP n 1 271 GLU n 1 272 GLY n 1 273 CYS n 1 274 TRP n 1 275 THR n 1 276 ARG n 1 277 ASN n 1 278 SER n 1 279 ASN n 1 280 MET n 1 281 ASN n 1 282 TYR n 1 283 TRP n 1 284 LEU n 1 285 ILE n 1 286 ILE n 1 287 ARG n 1 288 LEU n 1 289 PRO n 1 290 ILE n 1 291 LEU n 1 292 PHE n 1 293 ALA n 1 294 ILE n 1 295 GLY n 1 296 VAL n 1 297 ASN n 1 298 PHE n 1 299 LEU n 1 300 ILE n 1 301 PHE n 1 302 VAL n 1 303 ARG n 1 304 VAL n 1 305 ILE n 1 306 CYS n 1 307 ILE n 1 308 VAL n 1 309 VAL n 1 310 SER n 1 311 LYS n 1 312 LEU n 1 313 LYS n 1 314 ALA n 1 315 ASN n 1 316 GLU n 1 317 MET n 1 318 CYS n 1 319 LYS n 1 320 THR n 1 321 ASP n 1 322 ILE n 1 323 GLN n 1 324 CYS n 1 325 ARG n 1 326 LEU n 1 327 ALA n 1 328 LYS n 1 329 SER n 1 330 THR n 1 331 LEU n 1 332 THR n 1 333 LEU n 1 334 ILE n 1 335 PRO n 1 336 LEU n 1 337 LEU n 1 338 GLY n 1 339 THR n 1 340 HIS n 1 341 GLU n 1 342 VAL n 1 343 ILE n 1 344 PHE n 1 345 ALA n 1 346 PHE n 1 347 VAL n 1 348 MET n 1 349 ASP n 1 350 GLU n 1 351 HIS n 1 352 ALA n 1 353 ARG n 1 354 GLY n 1 355 THR n 1 356 LEU n 1 357 ARG n 1 358 PHE n 1 359 ILE n 1 360 LYS n 1 361 LEU n 1 362 PHE n 1 363 THR n 1 364 GLU n 1 365 LEU n 1 366 SER n 1 367 PHE n 1 368 THR n 1 369 SER n 1 370 PHE n 1 371 GLN n 1 372 GLY n 1 373 LEU n 1 374 MET n 1 375 VAL n 1 376 ALA n 1 377 ILE n 1 378 LEU n 1 379 TYR n 1 380 CYS n 1 381 PHE n 1 382 VAL n 1 383 ASN n 1 384 ASN n 1 385 GLU n 1 386 VAL n 1 387 GLN n 1 388 LEU n 1 389 GLU n 1 390 PHE n 1 391 ARG n 1 392 LYS n 1 393 SER n 1 394 TRP n 1 395 GLU n 1 396 ARG n 1 397 TRP n 1 398 ARG n 1 399 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 399 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene GLP1R _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Spodoptera frugiperda' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 7108 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code GLP1R_HUMAN _struct_ref.pdbx_db_accession P43220 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;RPQGATVSLWETVQKWREYRRQCQRSLTEDPPPATDLFCNRTFDEYACWPDGEPGSFVNVSCPWYLPWASSVPQGHVYRF CTAEGLWLQKDNSSLPWRDLSECEESKRGERSSPEEQLLFLYIIYTVGYALSFSALVIASAILLGFRHLHCTRNYIHLNL FASFILRALSVFIKDAALKWMYSTAAQQHQWDGLLSYQDSLSCRLVFLLMQYCVAANYYWLLVEGVYLYTLLAFSVLSEQ WIFRLYVSIGWGVPLLFVVPWGIVKYLYEDEGCWTRNSNMNYWLIIRLPILFAIGVNFLIFVRVICIVVSKLKANLMCKT DIKCRLAKSTLTLIPLLGTHEVIFAFVMDEHARGTLRFIKLFTELSFTSFQGLMVAILYCFVNNEVQLEFRKSWERWRL ; _struct_ref.pdbx_align_begin 24 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7S15 _struct_ref_seq.pdbx_strand_id R _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 399 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P43220 _struct_ref_seq.db_align_beg 24 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 422 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 24 _struct_ref_seq.pdbx_auth_seq_align_end 422 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 7S15 TYR R 123 ? UNP P43220 ILE 146 'engineered mutation' 146 1 1 7S15 ARG R 185 ? UNP P43220 ALA 208 'engineered mutation' 208 2 1 7S15 GLU R 190 ? UNP P43220 GLN 213 'engineered mutation' 213 3 1 7S15 ARG R 196 ? UNP P43220 SER 219 'engineered mutation' 219 4 1 7S15 ALA R 237 ? UNP P43220 LEU 260 'engineered mutation' 260 5 1 7S15 ALA R 268 ? UNP P43220 TYR 291 'engineered mutation' 291 6 1 7S15 GLU R 316 ? UNP P43220 LEU 339 'engineered mutation' 339 7 1 7S15 GLN R 323 ? UNP P43220 LYS 346 'engineered mutation' 346 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 82L non-polymer . ;2-[(4-{6-[(2,4-difluorophenyl)methoxy]pyridin-2-yl}piperidin-1-yl)methyl]-1-[(1-ethyl-1H-imidazol-5-yl)methyl]-1H-benzimidazole-6-carboxylic acid ; ? 'C32 H32 F2 N6 O3' 586.632 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7S15 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 7S15 _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.006 ? 3309 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.772 ? 4511 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 10.680 ? 1915 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.045 ? 485 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.004 ? 588 ? f_plane_restr ? ? # _struct.entry_id 7S15 _struct.title 'GLP-1 receptor bound with Pfizer small molecule agonist' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7S15 _struct_keywords.text 'GLP-1R, GPCR, MEMBRANE PROTEIN' _struct_keywords.pdbx_keywords 'MEMBRANE PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 8 ? GLU A 29 ? SER R 31 GLU R 52 1 ? 22 HELX_P HELX_P2 AA2 TRP A 68 ? VAL A 72 ? TRP R 91 VAL R 95 5 ? 5 HELX_P HELX_P3 AA3 GLU A 115 ? LEU A 143 ? GLU R 138 LEU R 166 1 ? 29 HELX_P HELX_P4 AA4 CYS A 151 ? LYS A 179 ? CYS R 174 LYS R 202 1 ? 29 HELX_P HELX_P5 AA5 TRP A 191 ? GLN A 198 ? TRP R 214 GLN R 221 1 ? 8 HELX_P HELX_P6 AA6 SER A 202 ? LEU A 231 ? SER R 225 LEU R 254 1 ? 30 HELX_P HELX_P7 AA7 GLN A 240 ? VAL A 253 ? GLN R 263 VAL R 276 1 ? 14 HELX_P HELX_P8 AA8 PRO A 254 ? PHE A 257 ? PRO R 277 PHE R 280 5 ? 4 HELX_P HELX_P9 AA9 VAL A 258 ? GLU A 269 ? VAL R 281 GLU R 292 1 ? 12 HELX_P HELX_P10 AB1 TRP A 283 ? LEU A 312 ? TRP R 306 LEU R 335 1 ? 30 HELX_P HELX_P11 AB2 ILE A 322 ? LEU A 337 ? ILE R 345 LEU R 360 1 ? 16 HELX_P HELX_P12 AB3 HIS A 340 ? MET A 348 ? HIS R 363 MET R 371 1 ? 9 HELX_P HELX_P13 AB4 GLY A 354 ? PHE A 370 ? GLY R 377 PHE R 393 1 ? 17 HELX_P HELX_P14 AB5 PHE A 370 ? PHE A 381 ? PHE R 393 PHE R 404 1 ? 12 HELX_P HELX_P15 AB6 ASN A 383 ? ARG A 398 ? ASN R 406 ARG R 421 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 23 SG ? ? ? 1_555 A CYS 48 SG ? ? R CYS 46 R CYS 71 1_555 ? ? ? ? ? ? ? 2.043 ? ? disulf2 disulf ? ? A CYS 39 SG ? ? ? 1_555 A CYS 81 SG ? ? R CYS 62 R CYS 104 1_555 ? ? ? ? ? ? ? 2.026 ? ? disulf3 disulf ? ? A CYS 62 SG ? ? ? 1_555 A CYS 103 SG ? ? R CYS 85 R CYS 126 1_555 ? ? ? ? ? ? ? 2.046 ? ? disulf4 disulf ? ? A CYS 203 SG ? ? ? 1_555 A CYS 273 SG ? ? R CYS 226 R CYS 296 1_555 ? ? ? ? ? ? ? 2.031 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 7S15 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C F N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ARG 1 24 ? ? ? R . n A 1 2 PRO 2 25 ? ? ? R . n A 1 3 GLN 3 26 ? ? ? R . n A 1 4 GLY 4 27 ? ? ? R . n A 1 5 ALA 5 28 ? ? ? R . n A 1 6 THR 6 29 ? ? ? R . n A 1 7 VAL 7 30 30 VAL VAL R . n A 1 8 SER 8 31 31 SER SER R . n A 1 9 LEU 9 32 32 LEU LEU R . n A 1 10 TRP 10 33 33 TRP TRP R . n A 1 11 GLU 11 34 34 GLU GLU R . n A 1 12 THR 12 35 35 THR THR R . n A 1 13 VAL 13 36 36 VAL VAL R . n A 1 14 GLN 14 37 37 GLN GLN R . n A 1 15 LYS 15 38 38 LYS LYS R . n A 1 16 TRP 16 39 39 TRP TRP R . n A 1 17 ARG 17 40 40 ARG ARG R . n A 1 18 GLU 18 41 41 GLU GLU R . n A 1 19 TYR 19 42 42 TYR TYR R . n A 1 20 ARG 20 43 43 ARG ARG R . n A 1 21 ARG 21 44 44 ARG ARG R . n A 1 22 GLN 22 45 45 GLN GLN R . n A 1 23 CYS 23 46 46 CYS CYS R . n A 1 24 GLN 24 47 47 GLN GLN R . n A 1 25 ARG 25 48 48 ARG ARG R . n A 1 26 SER 26 49 49 SER SER R . n A 1 27 LEU 27 50 50 LEU LEU R . n A 1 28 THR 28 51 51 THR THR R . n A 1 29 GLU 29 52 52 GLU GLU R . n A 1 30 ASP 30 53 53 ASP ASP R . n A 1 31 PRO 31 54 54 PRO PRO R . n A 1 32 PRO 32 55 55 PRO PRO R . n A 1 33 PRO 33 56 56 PRO PRO R . n A 1 34 ALA 34 57 57 ALA ALA R . n A 1 35 THR 35 58 58 THR THR R . n A 1 36 ASP 36 59 59 ASP ASP R . n A 1 37 LEU 37 60 60 LEU LEU R . n A 1 38 PHE 38 61 61 PHE PHE R . n A 1 39 CYS 39 62 62 CYS CYS R . n A 1 40 ASN 40 63 63 ASN ASN R . n A 1 41 ARG 41 64 64 ARG ARG R . n A 1 42 THR 42 65 65 THR THR R . n A 1 43 PHE 43 66 66 PHE PHE R . n A 1 44 ASP 44 67 67 ASP ASP R . n A 1 45 GLU 45 68 68 GLU GLU R . n A 1 46 TYR 46 69 69 TYR TYR R . n A 1 47 ALA 47 70 70 ALA ALA R . n A 1 48 CYS 48 71 71 CYS CYS R . n A 1 49 TRP 49 72 72 TRP TRP R . n A 1 50 PRO 50 73 73 PRO PRO R . n A 1 51 ASP 51 74 74 ASP ASP R . n A 1 52 GLY 52 75 75 GLY GLY R . n A 1 53 GLU 53 76 76 GLU GLU R . n A 1 54 PRO 54 77 77 PRO PRO R . n A 1 55 GLY 55 78 78 GLY GLY R . n A 1 56 SER 56 79 79 SER SER R . n A 1 57 PHE 57 80 80 PHE PHE R . n A 1 58 VAL 58 81 81 VAL VAL R . n A 1 59 ASN 59 82 82 ASN ASN R . n A 1 60 VAL 60 83 83 VAL VAL R . n A 1 61 SER 61 84 84 SER SER R . n A 1 62 CYS 62 85 85 CYS CYS R . n A 1 63 PRO 63 86 86 PRO PRO R . n A 1 64 TRP 64 87 87 TRP TRP R . n A 1 65 TYR 65 88 88 TYR TYR R . n A 1 66 LEU 66 89 89 LEU LEU R . n A 1 67 PRO 67 90 90 PRO PRO R . n A 1 68 TRP 68 91 91 TRP TRP R . n A 1 69 ALA 69 92 92 ALA ALA R . n A 1 70 SER 70 93 93 SER SER R . n A 1 71 SER 71 94 94 SER SER R . n A 1 72 VAL 72 95 95 VAL VAL R . n A 1 73 PRO 73 96 96 PRO PRO R . n A 1 74 GLN 74 97 97 GLN GLN R . n A 1 75 GLY 75 98 98 GLY GLY R . n A 1 76 HIS 76 99 99 HIS HIS R . n A 1 77 VAL 77 100 100 VAL VAL R . n A 1 78 TYR 78 101 101 TYR TYR R . n A 1 79 ARG 79 102 102 ARG ARG R . n A 1 80 PHE 80 103 103 PHE PHE R . n A 1 81 CYS 81 104 104 CYS CYS R . n A 1 82 THR 82 105 105 THR THR R . n A 1 83 ALA 83 106 106 ALA ALA R . n A 1 84 GLU 84 107 107 GLU GLU R . n A 1 85 GLY 85 108 108 GLY GLY R . n A 1 86 LEU 86 109 109 LEU LEU R . n A 1 87 TRP 87 110 110 TRP TRP R . n A 1 88 LEU 88 111 111 LEU LEU R . n A 1 89 GLN 89 112 112 GLN GLN R . n A 1 90 LYS 90 113 113 LYS LYS R . n A 1 91 ASP 91 114 114 ASP ASP R . n A 1 92 ASN 92 115 115 ASN ASN R . n A 1 93 SER 93 116 116 SER SER R . n A 1 94 SER 94 117 117 SER SER R . n A 1 95 LEU 95 118 118 LEU LEU R . n A 1 96 PRO 96 119 119 PRO PRO R . n A 1 97 TRP 97 120 120 TRP TRP R . n A 1 98 ARG 98 121 121 ARG ARG R . n A 1 99 ASP 99 122 122 ASP ASP R . n A 1 100 LEU 100 123 123 LEU LEU R . n A 1 101 SER 101 124 124 SER SER R . n A 1 102 GLU 102 125 125 GLU GLU R . n A 1 103 CYS 103 126 126 CYS CYS R . n A 1 104 GLU 104 127 127 GLU GLU R . n A 1 105 GLU 105 128 128 GLU GLU R . n A 1 106 SER 106 129 ? ? ? R . n A 1 107 LYS 107 130 ? ? ? R . n A 1 108 ARG 108 131 ? ? ? R . n A 1 109 GLY 109 132 ? ? ? R . n A 1 110 GLU 110 133 ? ? ? R . n A 1 111 ARG 111 134 ? ? ? R . n A 1 112 SER 112 135 135 SER SER R . n A 1 113 SER 113 136 136 SER SER R . n A 1 114 PRO 114 137 137 PRO PRO R . n A 1 115 GLU 115 138 138 GLU GLU R . n A 1 116 GLU 116 139 139 GLU GLU R . n A 1 117 GLN 117 140 140 GLN GLN R . n A 1 118 LEU 118 141 141 LEU LEU R . n A 1 119 LEU 119 142 142 LEU LEU R . n A 1 120 PHE 120 143 143 PHE PHE R . n A 1 121 LEU 121 144 144 LEU LEU R . n A 1 122 TYR 122 145 145 TYR TYR R . n A 1 123 TYR 123 146 146 TYR TYR R . n A 1 124 ILE 124 147 147 ILE ILE R . n A 1 125 TYR 125 148 148 TYR TYR R . n A 1 126 THR 126 149 149 THR THR R . n A 1 127 VAL 127 150 150 VAL VAL R . n A 1 128 GLY 128 151 151 GLY GLY R . n A 1 129 TYR 129 152 152 TYR TYR R . n A 1 130 ALA 130 153 153 ALA ALA R . n A 1 131 LEU 131 154 154 LEU LEU R . n A 1 132 SER 132 155 155 SER SER R . n A 1 133 PHE 133 156 156 PHE PHE R . n A 1 134 SER 134 157 157 SER SER R . n A 1 135 ALA 135 158 158 ALA ALA R . n A 1 136 LEU 136 159 159 LEU LEU R . n A 1 137 VAL 137 160 160 VAL VAL R . n A 1 138 ILE 138 161 161 ILE ILE R . n A 1 139 ALA 139 162 162 ALA ALA R . n A 1 140 SER 140 163 163 SER SER R . n A 1 141 ALA 141 164 164 ALA ALA R . n A 1 142 ILE 142 165 165 ILE ILE R . n A 1 143 LEU 143 166 166 LEU LEU R . n A 1 144 LEU 144 167 167 LEU LEU R . n A 1 145 GLY 145 168 168 GLY GLY R . n A 1 146 PHE 146 169 169 PHE PHE R . n A 1 147 ARG 147 170 170 ARG ARG R . n A 1 148 HIS 148 171 171 HIS HIS R . n A 1 149 LEU 149 172 172 LEU LEU R . n A 1 150 HIS 150 173 173 HIS HIS R . n A 1 151 CYS 151 174 174 CYS CYS R . n A 1 152 THR 152 175 175 THR THR R . n A 1 153 ARG 153 176 176 ARG ARG R . n A 1 154 ASN 154 177 177 ASN ASN R . n A 1 155 TYR 155 178 178 TYR TYR R . n A 1 156 ILE 156 179 179 ILE ILE R . n A 1 157 HIS 157 180 180 HIS HIS R . n A 1 158 LEU 158 181 181 LEU LEU R . n A 1 159 ASN 159 182 182 ASN ASN R . n A 1 160 LEU 160 183 183 LEU LEU R . n A 1 161 PHE 161 184 184 PHE PHE R . n A 1 162 ALA 162 185 185 ALA ALA R . n A 1 163 SER 163 186 186 SER SER R . n A 1 164 PHE 164 187 187 PHE PHE R . n A 1 165 ILE 165 188 188 ILE ILE R . n A 1 166 LEU 166 189 189 LEU LEU R . n A 1 167 ARG 167 190 190 ARG ARG R . n A 1 168 ALA 168 191 191 ALA ALA R . n A 1 169 LEU 169 192 192 LEU LEU R . n A 1 170 SER 170 193 193 SER SER R . n A 1 171 VAL 171 194 194 VAL VAL R . n A 1 172 PHE 172 195 195 PHE PHE R . n A 1 173 ILE 173 196 196 ILE ILE R . n A 1 174 LYS 174 197 197 LYS LYS R . n A 1 175 ASP 175 198 198 ASP ASP R . n A 1 176 ALA 176 199 199 ALA ALA R . n A 1 177 ALA 177 200 200 ALA ALA R . n A 1 178 LEU 178 201 201 LEU LEU R . n A 1 179 LYS 179 202 202 LYS LYS R . n A 1 180 TRP 180 203 203 TRP TRP R . n A 1 181 MET 181 204 204 MET MET R . n A 1 182 TYR 182 205 205 TYR TYR R . n A 1 183 SER 183 206 206 SER SER R . n A 1 184 THR 184 207 207 THR THR R . n A 1 185 ARG 185 208 208 ARG ARG R . n A 1 186 ALA 186 209 209 ALA ALA R . n A 1 187 GLN 187 210 210 GLN GLN R . n A 1 188 GLN 188 211 211 GLN GLN R . n A 1 189 HIS 189 212 212 HIS HIS R . n A 1 190 GLU 190 213 213 GLU GLU R . n A 1 191 TRP 191 214 214 TRP TRP R . n A 1 192 ASP 192 215 215 ASP ASP R . n A 1 193 GLY 193 216 216 GLY GLY R . n A 1 194 LEU 194 217 217 LEU LEU R . n A 1 195 LEU 195 218 218 LEU LEU R . n A 1 196 ARG 196 219 219 ARG ARG R . n A 1 197 TYR 197 220 220 TYR TYR R . n A 1 198 GLN 198 221 221 GLN GLN R . n A 1 199 ASP 199 222 222 ASP ASP R . n A 1 200 SER 200 223 223 SER SER R . n A 1 201 LEU 201 224 224 LEU LEU R . n A 1 202 SER 202 225 225 SER SER R . n A 1 203 CYS 203 226 226 CYS CYS R . n A 1 204 ARG 204 227 227 ARG ARG R . n A 1 205 LEU 205 228 228 LEU LEU R . n A 1 206 VAL 206 229 229 VAL VAL R . n A 1 207 PHE 207 230 230 PHE PHE R . n A 1 208 LEU 208 231 231 LEU LEU R . n A 1 209 LEU 209 232 232 LEU LEU R . n A 1 210 MET 210 233 233 MET MET R . n A 1 211 GLN 211 234 234 GLN GLN R . n A 1 212 TYR 212 235 235 TYR TYR R . n A 1 213 CYS 213 236 236 CYS CYS R . n A 1 214 VAL 214 237 237 VAL VAL R . n A 1 215 ALA 215 238 238 ALA ALA R . n A 1 216 ALA 216 239 239 ALA ALA R . n A 1 217 ASN 217 240 240 ASN ASN R . n A 1 218 TYR 218 241 241 TYR TYR R . n A 1 219 TYR 219 242 242 TYR TYR R . n A 1 220 TRP 220 243 243 TRP TRP R . n A 1 221 LEU 221 244 244 LEU LEU R . n A 1 222 LEU 222 245 245 LEU LEU R . n A 1 223 VAL 223 246 246 VAL VAL R . n A 1 224 GLU 224 247 247 GLU GLU R . n A 1 225 GLY 225 248 248 GLY GLY R . n A 1 226 VAL 226 249 249 VAL VAL R . n A 1 227 TYR 227 250 250 TYR TYR R . n A 1 228 LEU 228 251 251 LEU LEU R . n A 1 229 TYR 229 252 252 TYR TYR R . n A 1 230 THR 230 253 253 THR THR R . n A 1 231 LEU 231 254 254 LEU LEU R . n A 1 232 LEU 232 255 255 LEU LEU R . n A 1 233 ALA 233 256 256 ALA ALA R . n A 1 234 PHE 234 257 257 PHE PHE R . n A 1 235 SER 235 258 258 SER SER R . n A 1 236 VAL 236 259 259 VAL VAL R . n A 1 237 ALA 237 260 260 ALA ALA R . n A 1 238 SER 238 261 261 SER SER R . n A 1 239 GLU 239 262 262 GLU GLU R . n A 1 240 GLN 240 263 263 GLN GLN R . n A 1 241 TRP 241 264 264 TRP TRP R . n A 1 242 ILE 242 265 265 ILE ILE R . n A 1 243 PHE 243 266 266 PHE PHE R . n A 1 244 ARG 244 267 267 ARG ARG R . n A 1 245 LEU 245 268 268 LEU LEU R . n A 1 246 TYR 246 269 269 TYR TYR R . n A 1 247 VAL 247 270 270 VAL VAL R . n A 1 248 SER 248 271 271 SER SER R . n A 1 249 ILE 249 272 272 ILE ILE R . n A 1 250 GLY 250 273 273 GLY GLY R . n A 1 251 TRP 251 274 274 TRP TRP R . n A 1 252 GLY 252 275 275 GLY GLY R . n A 1 253 VAL 253 276 276 VAL VAL R . n A 1 254 PRO 254 277 277 PRO PRO R . n A 1 255 LEU 255 278 278 LEU LEU R . n A 1 256 LEU 256 279 279 LEU LEU R . n A 1 257 PHE 257 280 280 PHE PHE R . n A 1 258 VAL 258 281 281 VAL VAL R . n A 1 259 VAL 259 282 282 VAL VAL R . n A 1 260 PRO 260 283 283 PRO PRO R . n A 1 261 TRP 261 284 284 TRP TRP R . n A 1 262 GLY 262 285 285 GLY GLY R . n A 1 263 ILE 263 286 286 ILE ILE R . n A 1 264 VAL 264 287 287 VAL VAL R . n A 1 265 LYS 265 288 288 LYS LYS R . n A 1 266 TYR 266 289 289 TYR TYR R . n A 1 267 LEU 267 290 290 LEU LEU R . n A 1 268 ALA 268 291 291 ALA ALA R . n A 1 269 GLU 269 292 292 GLU GLU R . n A 1 270 ASP 270 293 293 ASP ASP R . n A 1 271 GLU 271 294 294 GLU GLU R . n A 1 272 GLY 272 295 295 GLY GLY R . n A 1 273 CYS 273 296 296 CYS CYS R . n A 1 274 TRP 274 297 297 TRP TRP R . n A 1 275 THR 275 298 298 THR THR R . n A 1 276 ARG 276 299 299 ARG ARG R . n A 1 277 ASN 277 300 300 ASN ASN R . n A 1 278 SER 278 301 301 SER SER R . n A 1 279 ASN 279 302 302 ASN ASN R . n A 1 280 MET 280 303 303 MET MET R . n A 1 281 ASN 281 304 304 ASN ASN R . n A 1 282 TYR 282 305 305 TYR TYR R . n A 1 283 TRP 283 306 306 TRP TRP R . n A 1 284 LEU 284 307 307 LEU LEU R . n A 1 285 ILE 285 308 308 ILE ILE R . n A 1 286 ILE 286 309 309 ILE ILE R . n A 1 287 ARG 287 310 310 ARG ARG R . n A 1 288 LEU 288 311 311 LEU LEU R . n A 1 289 PRO 289 312 312 PRO PRO R . n A 1 290 ILE 290 313 313 ILE ILE R . n A 1 291 LEU 291 314 314 LEU LEU R . n A 1 292 PHE 292 315 315 PHE PHE R . n A 1 293 ALA 293 316 316 ALA ALA R . n A 1 294 ILE 294 317 317 ILE ILE R . n A 1 295 GLY 295 318 318 GLY GLY R . n A 1 296 VAL 296 319 319 VAL VAL R . n A 1 297 ASN 297 320 320 ASN ASN R . n A 1 298 PHE 298 321 321 PHE PHE R . n A 1 299 LEU 299 322 322 LEU LEU R . n A 1 300 ILE 300 323 323 ILE ILE R . n A 1 301 PHE 301 324 324 PHE PHE R . n A 1 302 VAL 302 325 325 VAL VAL R . n A 1 303 ARG 303 326 326 ARG ARG R . n A 1 304 VAL 304 327 327 VAL VAL R . n A 1 305 ILE 305 328 328 ILE ILE R . n A 1 306 CYS 306 329 329 CYS CYS R . n A 1 307 ILE 307 330 330 ILE ILE R . n A 1 308 VAL 308 331 331 VAL VAL R . n A 1 309 VAL 309 332 332 VAL VAL R . n A 1 310 SER 310 333 333 SER SER R . n A 1 311 LYS 311 334 334 LYS LYS R . n A 1 312 LEU 312 335 335 LEU LEU R . n A 1 313 LYS 313 336 336 LYS LYS R . n A 1 314 ALA 314 337 337 ALA ALA R . n A 1 315 ASN 315 338 338 ASN ASN R . n A 1 316 GLU 316 339 ? ? ? R . n A 1 317 MET 317 340 ? ? ? R . n A 1 318 CYS 318 341 ? ? ? R . n A 1 319 LYS 319 342 ? ? ? R . n A 1 320 THR 320 343 343 THR THR R . n A 1 321 ASP 321 344 344 ASP ASP R . n A 1 322 ILE 322 345 345 ILE ILE R . n A 1 323 GLN 323 346 346 GLN GLN R . n A 1 324 CYS 324 347 347 CYS CYS R . n A 1 325 ARG 325 348 348 ARG ARG R . n A 1 326 LEU 326 349 349 LEU LEU R . n A 1 327 ALA 327 350 350 ALA ALA R . n A 1 328 LYS 328 351 351 LYS LYS R . n A 1 329 SER 329 352 352 SER SER R . n A 1 330 THR 330 353 353 THR THR R . n A 1 331 LEU 331 354 354 LEU LEU R . n A 1 332 THR 332 355 355 THR THR R . n A 1 333 LEU 333 356 356 LEU LEU R . n A 1 334 ILE 334 357 357 ILE ILE R . n A 1 335 PRO 335 358 358 PRO PRO R . n A 1 336 LEU 336 359 359 LEU LEU R . n A 1 337 LEU 337 360 360 LEU LEU R . n A 1 338 GLY 338 361 361 GLY GLY R . n A 1 339 THR 339 362 362 THR THR R . n A 1 340 HIS 340 363 363 HIS HIS R . n A 1 341 GLU 341 364 364 GLU GLU R . n A 1 342 VAL 342 365 365 VAL VAL R . n A 1 343 ILE 343 366 366 ILE ILE R . n A 1 344 PHE 344 367 367 PHE PHE R . n A 1 345 ALA 345 368 368 ALA ALA R . n A 1 346 PHE 346 369 369 PHE PHE R . n A 1 347 VAL 347 370 370 VAL VAL R . n A 1 348 MET 348 371 371 MET MET R . n A 1 349 ASP 349 372 372 ASP ASP R . n A 1 350 GLU 350 373 373 GLU GLU R . n A 1 351 HIS 351 374 374 HIS HIS R . n A 1 352 ALA 352 375 375 ALA ALA R . n A 1 353 ARG 353 376 376 ARG ARG R . n A 1 354 GLY 354 377 377 GLY GLY R . n A 1 355 THR 355 378 378 THR THR R . n A 1 356 LEU 356 379 379 LEU LEU R . n A 1 357 ARG 357 380 380 ARG ARG R . n A 1 358 PHE 358 381 381 PHE PHE R . n A 1 359 ILE 359 382 382 ILE ILE R . n A 1 360 LYS 360 383 383 LYS LYS R . n A 1 361 LEU 361 384 384 LEU LEU R . n A 1 362 PHE 362 385 385 PHE PHE R . n A 1 363 THR 363 386 386 THR THR R . n A 1 364 GLU 364 387 387 GLU GLU R . n A 1 365 LEU 365 388 388 LEU LEU R . n A 1 366 SER 366 389 389 SER SER R . n A 1 367 PHE 367 390 390 PHE PHE R . n A 1 368 THR 368 391 391 THR THR R . n A 1 369 SER 369 392 392 SER SER R . n A 1 370 PHE 370 393 393 PHE PHE R . n A 1 371 GLN 371 394 394 GLN GLN R . n A 1 372 GLY 372 395 395 GLY GLY R . n A 1 373 LEU 373 396 396 LEU LEU R . n A 1 374 MET 374 397 397 MET MET R . n A 1 375 VAL 375 398 398 VAL VAL R . n A 1 376 ALA 376 399 399 ALA ALA R . n A 1 377 ILE 377 400 400 ILE ILE R . n A 1 378 LEU 378 401 401 LEU LEU R . n A 1 379 TYR 379 402 402 TYR TYR R . n A 1 380 CYS 380 403 403 CYS CYS R . n A 1 381 PHE 381 404 404 PHE PHE R . n A 1 382 VAL 382 405 405 VAL VAL R . n A 1 383 ASN 383 406 406 ASN ASN R . n A 1 384 ASN 384 407 407 ASN ASN R . n A 1 385 GLU 385 408 408 GLU GLU R . n A 1 386 VAL 386 409 409 VAL VAL R . n A 1 387 GLN 387 410 410 GLN GLN R . n A 1 388 LEU 388 411 411 LEU LEU R . n A 1 389 GLU 389 412 412 GLU GLU R . n A 1 390 PHE 390 413 413 PHE PHE R . n A 1 391 ARG 391 414 414 ARG ARG R . n A 1 392 LYS 392 415 415 LYS LYS R . n A 1 393 SER 393 416 416 SER SER R . n A 1 394 TRP 394 417 417 TRP TRP R . n A 1 395 GLU 395 418 418 GLU GLU R . n A 1 396 ARG 396 419 419 ARG ARG R . n A 1 397 TRP 397 420 420 TRP TRP R . n A 1 398 ARG 398 421 421 ARG ARG R . n A 1 399 LEU 399 422 ? ? ? R . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id 82L _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 501 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id 82L _pdbx_nonpoly_scheme.auth_mon_id PFE _pdbx_nonpoly_scheme.pdb_strand_id R _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 23210 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-06-08 2 'Structure model' 1 1 2022-06-15 3 'Structure model' 1 2 2022-07-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.pdbx_database_id_PubMed' 2 2 'Structure model' '_citation.title' 3 3 'Structure model' '_citation.journal_volume' 4 3 'Structure model' '_citation.page_first' 5 3 'Structure model' '_citation.page_last' # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version 1.16_3549: _software.pdbx_ordinal 1 # _pdbx_entry_details.entry_id 7S15 _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _em_3d_fitting.entry_id 7S15 _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol 'RIGID BODY FIT' _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.id 1 _em_3d_fitting_list.details ? _em_3d_fitting_list.pdb_chain_id ? _em_3d_fitting_list.pdb_chain_residue_range ? _em_3d_fitting_list.pdb_entry_id 6B3J # _em_3d_reconstruction.entry_id 7S15 _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm 'BACK PROJECTION' _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages 1 _em_3d_reconstruction.num_particles 120000 _em_3d_reconstruction.resolution 3.8 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7.5 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details 'GLP1 receptor is stabilized by StaR mutations' _em_entity_assembly.name 'agonist bound GLP1 receptor' _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 7S15 _em_image_scans.id 1 _em_image_scans.dimension_height ? _em_image_scans.dimension_width ? _em_image_scans.frames_per_image 20 _em_image_scans.image_recording_id 1 _em_image_scans.sampling_size 5.0 _em_image_scans.scanner_model ? _em_image_scans.used_frames_per_image 1-20 _em_image_scans.citation_id ? _em_image_scans.number_digital_images ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.details ? # _em_imaging.id 1 _em_imaging.entry_id 7S15 _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure 'COMA FREE' _em_imaging.c2_aperture_diameter 70 _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen NITROGEN _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_magnification 29000 _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'Quantifoil R1.2/1.3' _em_sample_support.method ? _em_sample_support.film_material ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 298 _em_vitrification.cryogen_name ETHANE _em_vitrification.details ;-2 blotting force 4S blotting time ; _em_vitrification.humidity 100 _em_vitrification.instrument 'FEI VITROBOT MARK II' _em_vitrification.entry_id 7S15 _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7S15 _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 7S15 _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry C1 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OH _pdbx_validate_close_contact.auth_asym_id_1 R _pdbx_validate_close_contact.auth_comp_id_1 TYR _pdbx_validate_close_contact.auth_seq_id_1 241 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OE2 _pdbx_validate_close_contact.auth_asym_id_2 R _pdbx_validate_close_contact.auth_comp_id_2 GLU _pdbx_validate_close_contact.auth_seq_id_2 364 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.17 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CA _pdbx_validate_rmsd_angle.auth_asym_id_1 R _pdbx_validate_rmsd_angle.auth_comp_id_1 CYS _pdbx_validate_rmsd_angle.auth_seq_id_1 126 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CB _pdbx_validate_rmsd_angle.auth_asym_id_2 R _pdbx_validate_rmsd_angle.auth_comp_id_2 CYS _pdbx_validate_rmsd_angle.auth_seq_id_2 126 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 SG _pdbx_validate_rmsd_angle.auth_asym_id_3 R _pdbx_validate_rmsd_angle.auth_comp_id_3 CYS _pdbx_validate_rmsd_angle.auth_seq_id_3 126 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 121.85 _pdbx_validate_rmsd_angle.angle_target_value 114.20 _pdbx_validate_rmsd_angle.angle_deviation 7.65 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.10 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA R 57 ? ? -94.51 -60.37 2 1 GLU R 68 ? ? 65.09 -2.26 3 1 PRO R 77 ? ? -69.80 -177.68 4 1 GLN R 97 ? ? -99.37 37.17 5 1 ASN R 115 ? ? 75.58 -3.65 6 1 LEU R 123 ? ? -141.41 13.55 7 1 CYS R 126 ? ? -99.24 37.34 8 1 GLU R 138 ? ? -140.76 14.61 9 1 HIS R 171 ? ? 57.55 9.55 10 1 SER R 223 ? ? -69.87 9.51 11 1 SER R 258 ? ? 69.07 -3.86 12 1 GLN R 263 ? ? -56.06 -8.32 13 1 ASP R 293 ? ? -79.15 -162.69 14 1 THR R 298 ? ? 36.86 42.07 15 1 ASN R 300 ? ? -172.73 141.40 16 1 MET R 303 ? ? -141.92 12.75 17 1 TRP R 306 ? ? -99.60 34.84 18 1 ILE R 345 ? ? -102.38 -62.13 19 1 HIS R 374 ? ? -69.29 5.43 20 1 CYS R 403 ? ? -140.92 -2.23 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 R ARG 24 ? A ARG 1 2 1 Y 1 R PRO 25 ? A PRO 2 3 1 Y 1 R GLN 26 ? A GLN 3 4 1 Y 1 R GLY 27 ? A GLY 4 5 1 Y 1 R ALA 28 ? A ALA 5 6 1 Y 1 R THR 29 ? A THR 6 7 1 Y 1 R SER 129 ? A SER 106 8 1 Y 1 R LYS 130 ? A LYS 107 9 1 Y 1 R ARG 131 ? A ARG 108 10 1 Y 1 R GLY 132 ? A GLY 109 11 1 Y 1 R GLU 133 ? A GLU 110 12 1 Y 1 R ARG 134 ? A ARG 111 13 1 Y 1 R GLU 339 ? A GLU 316 14 1 Y 1 R MET 340 ? A MET 317 15 1 Y 1 R CYS 341 ? A CYS 318 16 1 Y 1 R LYS 342 ? A LYS 319 17 1 Y 1 R LEU 422 ? A LEU 399 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.ncbi_tax_id 7108 _em_entity_assembly_recombinant.organism 'Spodoptera frugiperda' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details 'Movies were aligned with MotionCorr2, particle selected with Gautomatch, processed with Relion2 and CisTEM' # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 2 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode SUPER-RESOLUTION _em_image_recording.film_or_detector_model 'GATAN K2 SUMMIT (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images 19000 # _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.details ? _em_particle_selection.method ? _em_particle_selection.num_particles_selected 6000000 _em_particle_selection.reference_model ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? Gautomatch ? 1 ? ? 2 'IMAGE ACQUISITION' ? SerialEM ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? Gctf ? 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? Coot ? ? 1 ? 8 OTHER ? ? ? ? ? ? 9 'INITIAL EULER ASSIGNMENT' ? RELION ? 1 ? ? 10 'FINAL EULER ASSIGNMENT' ? RELION ? 1 ? ? 11 CLASSIFICATION ? RELION ? 1 ? ? 12 RECONSTRUCTION ? RELION ? 1 ? ? 13 'MODEL REFINEMENT' ? PHENIX ? ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration 0.075 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Not funded' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id 82L _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id 82L _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name ;2-[(4-{6-[(2,4-difluorophenyl)methoxy]pyridin-2-yl}piperidin-1-yl)methyl]-1-[(1-ethyl-1H-imidazol-5-yl)methyl]-1H-benzimidazole-6-carboxylic acid ; _pdbx_entity_nonpoly.comp_id 82L # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details ? #