HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 02-SEP-21 7S1D TITLE CRYSTAL STRUCTURE OF E.COLI DSBA IN COMPLEX WITH COMPOUND MIPS-0001877 TITLE 2 (COMPOUND 39) COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOL:DISULFIDE INTERCHANGE PROTEIN DSBA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: DSBA, DSF, PPFA, B3860, JW3832; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS THIOREDOXIN FOLD, THIOL-DISULFIDE OXIDOREDUCTASE, INHIBITOR, DSBA, KEYWDS 2 OXIDOREDUCTASE-INHIBITOR COMPLEX, OXIDOREDUCTASE, OXIDOREDUCTASE- KEYWDS 3 OXIDOREDUCTASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.HERAS,M.J.SCANLON,J.L.MARTIN,S.CARIA REVDAT 2 03-APR-24 7S1D 1 REMARK REVDAT 1 08-FEB-23 7S1D 0 JRNL AUTH C.D.BRADLEY,R.L.WHITEHOUSE,K.RIMMER,M.WILLIAMS,B.HERAS, JRNL AUTH 2 S.CARIA,O.ILYICHOVA,M.VAZIRANI,B.MOHANTY,J.HARPER, JRNL AUTH 3 M.J.SCANLON,J.S.SIMPSON JRNL TITL FLUOROMETHYLKETONE-FRAGMENT CONJUGATES DESIGNED AS COVALENT JRNL TITL 2 MODIFIERS OF ECDSBA ARE ATYPICAL SUBSTRATES JRNL REF CHEMRXIV 2022 JRNL REFN ISSN 2573-2293 JRNL DOI 10.26434/CHEMRXIV-2022-262LH REMARK 2 REMARK 2 RESOLUTION. 1.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1760 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 58959 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 2931 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.0320 - 4.3834 0.98 2717 146 0.1620 0.2095 REMARK 3 2 4.3834 - 3.4805 0.99 2659 161 0.1344 0.1622 REMARK 3 3 3.4805 - 3.0409 0.99 2709 122 0.1471 0.1761 REMARK 3 4 3.0409 - 2.7630 0.99 2673 148 0.1557 0.2053 REMARK 3 5 2.7630 - 2.5651 1.00 2668 153 0.1518 0.1808 REMARK 3 6 2.5651 - 2.4139 1.00 2706 131 0.1599 0.1974 REMARK 3 7 2.4139 - 2.2930 1.00 2660 141 0.1550 0.1878 REMARK 3 8 2.2930 - 2.1932 0.99 2676 146 0.1575 0.2249 REMARK 3 9 2.1932 - 2.1088 1.00 2666 148 0.1605 0.1957 REMARK 3 10 2.1088 - 2.0360 1.00 2671 144 0.1574 0.2152 REMARK 3 11 2.0360 - 1.9724 0.99 2682 141 0.1590 0.1977 REMARK 3 12 1.9724 - 1.9160 0.99 2631 160 0.1672 0.1828 REMARK 3 13 1.9160 - 1.8656 0.99 2674 144 0.1735 0.1979 REMARK 3 14 1.8656 - 1.8201 0.99 2638 146 0.1746 0.2385 REMARK 3 15 1.8201 - 1.7787 0.99 2645 137 0.1671 0.1804 REMARK 3 16 1.7787 - 1.7408 1.00 2684 114 0.1800 0.2264 REMARK 3 17 1.7408 - 1.7060 0.99 2635 152 0.1859 0.2342 REMARK 3 18 1.7060 - 1.6738 0.99 2688 120 0.1861 0.2144 REMARK 3 19 1.6738 - 1.6439 0.99 2656 131 0.1900 0.2015 REMARK 3 20 1.6439 - 1.6161 0.99 2635 112 0.1961 0.1961 REMARK 3 21 1.6161 - 1.5900 0.99 2655 134 0.2160 0.2489 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.700 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.33 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3086 REMARK 3 ANGLE : 1.247 4180 REMARK 3 CHIRALITY : 0.056 451 REMARK 3 PLANARITY : 0.007 547 REMARK 3 DIHEDRAL : 14.507 1134 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.3063 -9.8358 0.5137 REMARK 3 T TENSOR REMARK 3 T11: 0.2070 T22: 0.2020 REMARK 3 T33: 0.1684 T12: -0.0225 REMARK 3 T13: -0.0156 T23: -0.0364 REMARK 3 L TENSOR REMARK 3 L11: 0.7939 L22: 2.8553 REMARK 3 L33: 1.9457 L12: 0.0825 REMARK 3 L13: 0.9256 L23: 1.5977 REMARK 3 S TENSOR REMARK 3 S11: 0.1231 S12: 0.1994 S13: -0.1696 REMARK 3 S21: -0.3362 S22: 0.0247 S23: -0.0866 REMARK 3 S31: 0.0053 S32: 0.2020 S33: -0.1301 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 66 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.4510 -1.6075 16.8035 REMARK 3 T TENSOR REMARK 3 T11: 0.0994 T22: 0.1280 REMARK 3 T33: 0.0929 T12: -0.0339 REMARK 3 T13: -0.0218 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 1.7877 L22: 1.5977 REMARK 3 L33: 2.1305 L12: 0.5566 REMARK 3 L13: 0.0378 L23: 0.0811 REMARK 3 S TENSOR REMARK 3 S11: -0.0454 S12: -0.0550 S13: -0.0012 REMARK 3 S21: 0.0125 S22: 0.0061 S23: -0.1295 REMARK 3 S31: -0.0348 S32: 0.1848 S33: 0.0327 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 146 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.7460 -13.3490 -4.0361 REMARK 3 T TENSOR REMARK 3 T11: 0.2039 T22: 0.2189 REMARK 3 T33: 0.1682 T12: -0.0022 REMARK 3 T13: -0.0427 T23: -0.0512 REMARK 3 L TENSOR REMARK 3 L11: 1.2052 L22: 3.7441 REMARK 3 L33: 2.3273 L12: 0.3334 REMARK 3 L13: 0.2744 L23: 1.2330 REMARK 3 S TENSOR REMARK 3 S11: 0.0109 S12: 0.2884 S13: -0.0507 REMARK 3 S21: -0.4533 S22: 0.0607 S23: 0.1560 REMARK 3 S31: -0.1521 S32: 0.1463 S33: -0.0725 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.7742 0.5765 19.8674 REMARK 3 T TENSOR REMARK 3 T11: 0.2008 T22: 0.1592 REMARK 3 T33: 0.1723 T12: 0.0240 REMARK 3 T13: 0.0219 T23: 0.0232 REMARK 3 L TENSOR REMARK 3 L11: 0.8227 L22: 1.7846 REMARK 3 L33: 2.0136 L12: 0.4447 REMARK 3 L13: -0.0930 L23: 1.1833 REMARK 3 S TENSOR REMARK 3 S11: 0.0264 S12: 0.0725 S13: 0.1223 REMARK 3 S21: -0.2134 S22: 0.0156 S23: 0.3037 REMARK 3 S31: -0.4433 S32: -0.2704 S33: -0.0354 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 39 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.0376 -6.0740 30.6656 REMARK 3 T TENSOR REMARK 3 T11: 0.2074 T22: 0.1067 REMARK 3 T33: 0.2222 T12: -0.0090 REMARK 3 T13: 0.0656 T23: 0.0088 REMARK 3 L TENSOR REMARK 3 L11: 7.7891 L22: 5.4209 REMARK 3 L33: 4.0056 L12: -3.7312 REMARK 3 L13: -1.7201 L23: 1.4608 REMARK 3 S TENSOR REMARK 3 S11: -0.0307 S12: -0.1276 S13: -0.1866 REMARK 3 S21: 0.4974 S22: 0.0785 S23: 0.5947 REMARK 3 S31: 0.1287 S32: -0.2685 S33: -0.0728 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 50 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.6705 -6.7090 19.0483 REMARK 3 T TENSOR REMARK 3 T11: 0.1805 T22: 0.2971 REMARK 3 T33: 0.2737 T12: -0.0241 REMARK 3 T13: -0.0021 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 2.7266 L22: 4.4643 REMARK 3 L33: 6.3216 L12: -1.4286 REMARK 3 L13: -1.6877 L23: 3.0283 REMARK 3 S TENSOR REMARK 3 S11: -0.0138 S12: -0.2330 S13: 0.1810 REMARK 3 S21: 0.1209 S22: -0.0996 S23: 0.5043 REMARK 3 S31: -0.1185 S32: -0.4830 S33: 0.0859 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 66 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.0835 -21.0279 14.7467 REMARK 3 T TENSOR REMARK 3 T11: 0.1367 T22: 0.1561 REMARK 3 T33: 0.1242 T12: -0.0394 REMARK 3 T13: -0.0171 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 3.5022 L22: 2.5587 REMARK 3 L33: 1.3994 L12: 0.3993 REMARK 3 L13: -1.5303 L23: 0.5415 REMARK 3 S TENSOR REMARK 3 S11: -0.0604 S12: 0.0352 S13: -0.1695 REMARK 3 S21: -0.0368 S22: -0.0260 S23: -0.0525 REMARK 3 S31: 0.0339 S32: 0.0085 S33: 0.0822 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 115 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.6059 -27.8863 12.1359 REMARK 3 T TENSOR REMARK 3 T11: 0.1457 T22: 0.2450 REMARK 3 T33: 0.1609 T12: -0.0914 REMARK 3 T13: 0.0003 T23: -0.0059 REMARK 3 L TENSOR REMARK 3 L11: 4.4307 L22: 1.6834 REMARK 3 L33: 4.9082 L12: -0.1704 REMARK 3 L13: 2.2974 L23: 0.3909 REMARK 3 S TENSOR REMARK 3 S11: -0.1093 S12: 0.2967 S13: -0.4405 REMARK 3 S21: -0.3204 S22: 0.1071 S23: 0.1063 REMARK 3 S31: 0.3065 S32: -0.1274 S33: 0.0317 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 129 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.5855 -10.4059 8.4356 REMARK 3 T TENSOR REMARK 3 T11: 0.2391 T22: 0.2973 REMARK 3 T33: 0.2793 T12: 0.0116 REMARK 3 T13: -0.1174 T23: 0.0709 REMARK 3 L TENSOR REMARK 3 L11: 2.7873 L22: 4.2140 REMARK 3 L33: 1.3258 L12: 2.4050 REMARK 3 L13: -0.3644 L23: 0.2351 REMARK 3 S TENSOR REMARK 3 S11: -0.1411 S12: 0.1990 S13: 0.3500 REMARK 3 S21: -0.7378 S22: 0.1624 S23: 0.9501 REMARK 3 S31: -0.1632 S32: -0.4363 S33: 0.0188 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 145 THROUGH 161 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.2393 2.6431 15.9415 REMARK 3 T TENSOR REMARK 3 T11: 0.2729 T22: 0.1736 REMARK 3 T33: 0.3006 T12: 0.0311 REMARK 3 T13: 0.0206 T23: 0.0451 REMARK 3 L TENSOR REMARK 3 L11: 5.4441 L22: 5.5543 REMARK 3 L33: 4.9978 L12: -2.5709 REMARK 3 L13: 0.4856 L23: 1.6025 REMARK 3 S TENSOR REMARK 3 S11: 0.0735 S12: 0.0413 S13: 0.6128 REMARK 3 S21: -0.5132 S22: 0.0862 S23: 0.4442 REMARK 3 S31: -0.8417 S32: -0.4199 S33: -0.1688 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 162 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.2059 5.4136 26.5590 REMARK 3 T TENSOR REMARK 3 T11: 0.3256 T22: 0.2412 REMARK 3 T33: 0.3768 T12: -0.0554 REMARK 3 T13: 0.1772 T23: -0.0900 REMARK 3 L TENSOR REMARK 3 L11: 4.8674 L22: 4.8986 REMARK 3 L33: 5.8948 L12: -0.2645 REMARK 3 L13: -0.3386 L23: -2.3561 REMARK 3 S TENSOR REMARK 3 S11: -0.1271 S12: -0.1103 S13: 0.0561 REMARK 3 S21: -0.5222 S22: 0.1095 S23: -0.7481 REMARK 3 S31: -0.0873 S32: 0.8476 S33: -0.0203 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 171 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.4091 3.8092 30.1148 REMARK 3 T TENSOR REMARK 3 T11: 0.2743 T22: 0.1189 REMARK 3 T33: 0.2878 T12: 0.0174 REMARK 3 T13: 0.1452 T23: -0.0108 REMARK 3 L TENSOR REMARK 3 L11: 3.4467 L22: 3.7644 REMARK 3 L33: 4.6925 L12: 0.8267 REMARK 3 L13: 1.0871 L23: -0.7358 REMARK 3 S TENSOR REMARK 3 S11: 0.0757 S12: 0.0122 S13: 0.3584 REMARK 3 S21: 0.0966 S22: 0.0906 S23: 0.3397 REMARK 3 S31: -0.2088 S32: -0.3114 S33: -0.1255 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7S1D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-SEP-21. REMARK 100 THE DEPOSITION ID IS D_1000259449. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.953690 REMARK 200 MONOCHROMATOR : DOUBLE SI WITH SAGITTALY BENT REMARK 200 SECOND CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.9 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58965 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.590 REMARK 200 RESOLUTION RANGE LOW (A) : 56.423 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03800 REMARK 200 FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.40200 REMARK 200 R SYM FOR SHELL (I) : 0.40200 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: DSBA WT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11-13% PEG 8000, 5-7.5% GLYCEROL, 1 MM REMARK 280 CUCL2, 100 MM SODIUM CACODYLATE, PH 6.2, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 57.98300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.11000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 57.98300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.11000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 467 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 189 REMARK 465 LYS B 189 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR B 184 O HOH B 301 2.03 REMARK 500 OD2 ASP A 67 O HOH A 301 2.05 REMARK 500 O HOH A 484 O HOH A 522 2.08 REMARK 500 O HOH A 466 O HOH A 482 2.09 REMARK 500 O HOH B 390 O HOH B 471 2.10 REMARK 500 O HOH A 497 O HOH A 545 2.12 REMARK 500 O HOH A 326 O HOH A 509 2.14 REMARK 500 OE1 GLU A 120 O HOH A 302 2.14 REMARK 500 O HOH B 332 O HOH B 434 2.15 REMARK 500 O HOH B 337 O HOH B 472 2.17 REMARK 500 O HOH A 339 O HOH A 439 2.17 REMARK 500 O HOH B 417 O HOH B 483 2.18 REMARK 500 O HOH A 509 O HOH A 516 2.18 REMARK 500 N ALA A 1 OE1 GLU A 4 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 392 O HOH B 488 4556 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 7 -85.58 -98.71 REMARK 500 LYS A 98 -60.16 -96.06 REMARK 500 LYS B 7 -83.91 -102.05 REMARK 500 LYS B 98 -67.13 -97.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 546 DISTANCE = 6.04 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 201 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 1 N REMARK 620 2 ALA B 1 O 85.9 REMARK 620 3 GLU B 4 OE1 95.1 100.3 REMARK 620 4 ASP B 44 OD2 106.0 22.7 88.0 REMARK 620 5 HOH B 392 O 171.1 88.9 92.9 70.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 202 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 4 OE1 REMARK 620 2 ASP B 44 OD2 6.8 REMARK 620 3 HOH B 492 O 172.7 166.8 REMARK 620 N 1 2 DBREF 7S1D A 1 189 UNP P0AEG4 DSBA_ECOLI 20 208 DBREF 7S1D B 1 189 UNP P0AEG4 DSBA_ECOLI 20 208 SEQRES 1 A 189 ALA GLN TYR GLU ASP GLY LYS GLN TYR THR THR LEU GLU SEQRES 2 A 189 LYS PRO VAL ALA GLY ALA PRO GLN VAL LEU GLU PHE PHE SEQRES 3 A 189 SER PHE PHE CYS PRO HIS CYS TYR GLN PHE GLU GLU VAL SEQRES 4 A 189 LEU HIS ILE SER ASP ASN VAL LYS LYS LYS LEU PRO GLU SEQRES 5 A 189 GLY VAL LYS MET THR LYS TYR HIS VAL ASN PHE MET GLY SEQRES 6 A 189 GLY ASP LEU GLY LYS ASP LEU THR GLN ALA TRP ALA VAL SEQRES 7 A 189 ALA MET ALA LEU GLY VAL GLU ASP LYS VAL THR VAL PRO SEQRES 8 A 189 LEU PHE GLU GLY VAL GLN LYS THR GLN THR ILE ARG SER SEQRES 9 A 189 ALA SER ASP ILE ARG ASP VAL PHE ILE ASN ALA GLY ILE SEQRES 10 A 189 LYS GLY GLU GLU TYR ASP ALA ALA TRP ASN SER PHE VAL SEQRES 11 A 189 VAL LYS SER LEU VAL ALA GLN GLN GLU LYS ALA ALA ALA SEQRES 12 A 189 ASP VAL GLN LEU ARG GLY VAL PRO ALA MET PHE VAL ASN SEQRES 13 A 189 GLY LYS TYR GLN LEU ASN PRO GLN GLY MET ASP THR SER SEQRES 14 A 189 ASN MET ASP VAL PHE VAL GLN GLN TYR ALA ASP THR VAL SEQRES 15 A 189 LYS TYR LEU SER GLU LYS LYS SEQRES 1 B 189 ALA GLN TYR GLU ASP GLY LYS GLN TYR THR THR LEU GLU SEQRES 2 B 189 LYS PRO VAL ALA GLY ALA PRO GLN VAL LEU GLU PHE PHE SEQRES 3 B 189 SER PHE PHE CYS PRO HIS CYS TYR GLN PHE GLU GLU VAL SEQRES 4 B 189 LEU HIS ILE SER ASP ASN VAL LYS LYS LYS LEU PRO GLU SEQRES 5 B 189 GLY VAL LYS MET THR LYS TYR HIS VAL ASN PHE MET GLY SEQRES 6 B 189 GLY ASP LEU GLY LYS ASP LEU THR GLN ALA TRP ALA VAL SEQRES 7 B 189 ALA MET ALA LEU GLY VAL GLU ASP LYS VAL THR VAL PRO SEQRES 8 B 189 LEU PHE GLU GLY VAL GLN LYS THR GLN THR ILE ARG SER SEQRES 9 B 189 ALA SER ASP ILE ARG ASP VAL PHE ILE ASN ALA GLY ILE SEQRES 10 B 189 LYS GLY GLU GLU TYR ASP ALA ALA TRP ASN SER PHE VAL SEQRES 11 B 189 VAL LYS SER LEU VAL ALA GLN GLN GLU LYS ALA ALA ALA SEQRES 12 B 189 ASP VAL GLN LEU ARG GLY VAL PRO ALA MET PHE VAL ASN SEQRES 13 B 189 GLY LYS TYR GLN LEU ASN PRO GLN GLY MET ASP THR SER SEQRES 14 B 189 ASN MET ASP VAL PHE VAL GLN GLN TYR ALA ASP THR VAL SEQRES 15 B 189 LYS TYR LEU SER GLU LYS LYS HET 648 A 201 36 HET CU B 201 1 HET CU B 202 1 HETNAM 648 1-[3-(THIOPHEN-3-YL)BENZYL]PIPERIDIN-2-ONE HETNAM CU COPPER (II) ION FORMUL 3 648 C16 H17 N O S FORMUL 4 CU 2(CU 2+) FORMUL 6 HOH *490(H2 O) HELIX 1 AA1 CYS A 30 VAL A 39 1 10 HELIX 2 AA2 HIS A 41 LYS A 48 1 8 HELIX 3 AA3 GLY A 65 GLY A 83 1 19 HELIX 4 AA4 VAL A 84 LYS A 98 1 15 HELIX 5 AA5 SER A 104 ALA A 115 1 12 HELIX 6 AA6 LYS A 118 ASN A 127 1 10 HELIX 7 AA7 SER A 128 VAL A 145 1 18 HELIX 8 AA8 PRO A 163 MET A 166 5 4 HELIX 9 AA9 ASN A 170 LYS A 188 1 19 HELIX 10 AB1 CYS B 30 VAL B 39 1 10 HELIX 11 AB2 HIS B 41 LEU B 50 1 10 HELIX 12 AB3 GLY B 65 GLY B 83 1 19 HELIX 13 AB4 VAL B 84 LYS B 98 1 15 HELIX 14 AB5 SER B 104 ALA B 115 1 12 HELIX 15 AB6 LYS B 118 ASN B 127 1 10 HELIX 16 AB7 SER B 128 VAL B 145 1 18 HELIX 17 AB8 PRO B 163 MET B 166 5 4 HELIX 18 AB9 ASN B 170 GLU B 187 1 18 SHEET 1 AA1 5 TYR A 9 THR A 11 0 SHEET 2 AA1 5 TYR A 159 LEU A 161 -1 O GLN A 160 N THR A 10 SHEET 3 AA1 5 ALA A 152 VAL A 155 -1 N MET A 153 O LEU A 161 SHEET 4 AA1 5 VAL A 22 PHE A 26 -1 N PHE A 25 O ALA A 152 SHEET 5 AA1 5 MET A 56 HIS A 60 1 O THR A 57 N GLU A 24 SHEET 1 AA2 5 TYR B 9 THR B 11 0 SHEET 2 AA2 5 TYR B 159 LEU B 161 -1 O GLN B 160 N THR B 10 SHEET 3 AA2 5 ALA B 152 VAL B 155 -1 N MET B 153 O LEU B 161 SHEET 4 AA2 5 VAL B 22 PHE B 26 -1 N LEU B 23 O PHE B 154 SHEET 5 AA2 5 MET B 56 HIS B 60 1 O THR B 57 N GLU B 24 SSBOND 1 CYS A 30 CYS A 33 1555 1555 2.07 SSBOND 2 CYS B 30 CYS B 33 1555 1555 2.08 LINK N ALA B 1 CU CU B 201 1555 1555 2.09 LINK O ALA B 1 CU CU B 201 1555 1555 2.01 LINK OE1 GLU B 4 CU CU B 201 1555 1555 2.49 LINK OE1 GLU B 4 CU CU B 202 1555 1555 2.02 LINK OD2 ASP B 44 CU CU B 201 1555 4546 2.01 LINK OD2 ASP B 44 CU CU B 202 1555 4546 2.45 LINK CU CU B 201 O HOH B 392 1555 1555 1.96 LINK CU CU B 202 O HOH B 492 1555 4556 2.03 CISPEP 1 VAL A 150 PRO A 151 0 -5.36 CISPEP 2 VAL B 150 PRO B 151 0 -2.73 CRYST1 115.966 64.220 74.356 90.00 126.04 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008623 0.000000 0.006274 0.00000 SCALE2 0.000000 0.015571 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016632 0.00000