HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 02-SEP-21 7S1F TITLE CRYSTAL STRUCTURE OF E.COLI DSBA IN COMPLEX WITH COMPOUND MIPS-0001886 TITLE 2 (COMPOUND 38) COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOL:DISULFIDE INTERCHANGE PROTEIN DSBA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: DSBA, DSF, PPFA, B3860, JW3832; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS THIOREDOXIN FOLD, THIOL-DISULFIDE OXIDOREDUCTASE, INHIBITOR, DSBA, KEYWDS 2 OXIDOREDUCTASE, OXIDOREDUCTASE-OXIDOREDUCTASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.HERAS,M.J.SCANLON,J.L.MARTIN,S.CARIA REVDAT 2 03-APR-24 7S1F 1 REMARK REVDAT 1 08-FEB-23 7S1F 0 JRNL AUTH C.D.BRADLEY,R.L.WHITEHOUSE,K.RIMMER,M.WILLIAMS,B.HERAS, JRNL AUTH 2 S.CARIA,O.ILYICHOVA,M.VAZIRANI,B.MOHANTY,J.HARPER, JRNL AUTH 3 M.J.SCANLON,J.S.SIMPSON JRNL TITL FLUOROMETHYLKETONE-FRAGMENT CONJUGATES DESIGNED AS COVALENT JRNL TITL 2 MODIFIERS OF ECDSBA ARE ATYPICAL SUBSTRATES JRNL REF CHEMRXIV 2022 JRNL REFN ISSN 2573-2293 JRNL DOI 10.26434/CHEMRXIV-2022-262LH REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1760 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 43406 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2206 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 56.4930 - 4.4343 0.98 2639 139 0.1528 0.1841 REMARK 3 2 4.4343 - 3.5198 0.98 2561 149 0.1356 0.1772 REMARK 3 3 3.5198 - 3.0749 0.99 2603 128 0.1524 0.1953 REMARK 3 4 3.0749 - 2.7938 1.00 2588 138 0.1649 0.2021 REMARK 3 5 2.7938 - 2.5936 0.99 2574 156 0.1568 0.1892 REMARK 3 6 2.5936 - 2.4406 1.00 2592 122 0.1632 0.2186 REMARK 3 7 2.4406 - 2.3184 1.00 2580 132 0.1620 0.1757 REMARK 3 8 2.3184 - 2.2175 0.98 2544 139 0.1635 0.2196 REMARK 3 9 2.2175 - 2.1321 1.00 2533 148 0.1572 0.1784 REMARK 3 10 2.1321 - 2.0585 0.98 2531 142 0.1771 0.2450 REMARK 3 11 2.0585 - 1.9942 0.99 2586 126 0.1811 0.2316 REMARK 3 12 1.9942 - 1.9372 1.00 2582 124 0.1841 0.2143 REMARK 3 13 1.9372 - 1.8862 0.99 2570 132 0.2131 0.2805 REMARK 3 14 1.8862 - 1.8401 1.00 2545 149 0.2058 0.2965 REMARK 3 15 1.8401 - 1.7983 1.00 2601 151 0.2078 0.2481 REMARK 3 16 1.7983 - 1.7600 1.00 2571 131 0.2032 0.2381 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.900 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 3109 REMARK 3 ANGLE : 1.247 4210 REMARK 3 CHIRALITY : 0.061 453 REMARK 3 PLANARITY : 0.006 549 REMARK 3 DIHEDRAL : 14.988 1141 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.3898 -9.7688 -0.4605 REMARK 3 T TENSOR REMARK 3 T11: 0.2290 T22: 0.2063 REMARK 3 T33: 0.1747 T12: 0.0257 REMARK 3 T13: -0.0246 T23: 0.0356 REMARK 3 L TENSOR REMARK 3 L11: 0.5239 L22: 1.7499 REMARK 3 L33: 1.4634 L12: 0.0381 REMARK 3 L13: 0.5804 L23: -1.0535 REMARK 3 S TENSOR REMARK 3 S11: 0.1053 S12: -0.1749 S13: -0.1203 REMARK 3 S21: 0.3382 S22: -0.0046 S23: 0.0007 REMARK 3 S31: -0.0505 S32: -0.2408 S33: -0.0845 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 66 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.5494 -1.6569 -16.8232 REMARK 3 T TENSOR REMARK 3 T11: 0.1392 T22: 0.1398 REMARK 3 T33: 0.1134 T12: 0.0526 REMARK 3 T13: -0.0169 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 1.0941 L22: 0.9415 REMARK 3 L33: 1.5401 L12: -0.1870 REMARK 3 L13: 0.2737 L23: -0.2673 REMARK 3 S TENSOR REMARK 3 S11: -0.1015 S12: -0.0407 S13: 0.0442 REMARK 3 S21: 0.0388 S22: 0.0886 S23: 0.0916 REMARK 3 S31: -0.0359 S32: -0.2094 S33: 0.0057 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 146 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.4299 -13.3650 3.9815 REMARK 3 T TENSOR REMARK 3 T11: 0.2282 T22: 0.2050 REMARK 3 T33: 0.1952 T12: -0.0010 REMARK 3 T13: -0.0403 T23: 0.0573 REMARK 3 L TENSOR REMARK 3 L11: 0.7448 L22: 2.2137 REMARK 3 L33: 1.3189 L12: -0.1086 REMARK 3 L13: 0.0318 L23: -0.6916 REMARK 3 S TENSOR REMARK 3 S11: 0.0602 S12: -0.2369 S13: -0.0555 REMARK 3 S21: 0.3294 S22: -0.0626 S23: -0.3056 REMARK 3 S31: -0.1580 S32: -0.0218 S33: -0.0067 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.8851 0.5573 -19.8239 REMARK 3 T TENSOR REMARK 3 T11: 0.3050 T22: 0.2126 REMARK 3 T33: 0.2586 T12: -0.0564 REMARK 3 T13: 0.0601 T23: -0.0330 REMARK 3 L TENSOR REMARK 3 L11: 0.8898 L22: 1.4236 REMARK 3 L33: 1.5467 L12: -0.4375 REMARK 3 L13: -0.0241 L23: -1.0649 REMARK 3 S TENSOR REMARK 3 S11: 0.0942 S12: -0.0450 S13: 0.2196 REMARK 3 S21: 0.1456 S22: 0.0600 S23: -0.2765 REMARK 3 S31: -0.5728 S32: 0.3633 S33: -0.0239 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 39 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.8559 -6.1738 -30.6317 REMARK 3 T TENSOR REMARK 3 T11: 0.2524 T22: 0.1537 REMARK 3 T33: 0.3036 T12: 0.0389 REMARK 3 T13: 0.1140 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 4.2403 L22: 1.4585 REMARK 3 L33: 2.0581 L12: 0.9251 REMARK 3 L13: -1.2081 L23: -0.9076 REMARK 3 S TENSOR REMARK 3 S11: 0.0070 S12: 0.1254 S13: -0.0439 REMARK 3 S21: -0.3104 S22: -0.0394 S23: -0.3277 REMARK 3 S31: 0.2109 S32: 0.2458 S33: -0.0576 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 50 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.7042 -6.7234 -18.8707 REMARK 3 T TENSOR REMARK 3 T11: 0.1847 T22: 0.3875 REMARK 3 T33: 0.3126 T12: 0.0337 REMARK 3 T13: 0.0306 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 1.5946 L22: 2.4373 REMARK 3 L33: 3.6251 L12: 0.5746 REMARK 3 L13: -0.7833 L23: -1.6151 REMARK 3 S TENSOR REMARK 3 S11: 0.1281 S12: 0.3654 S13: 0.3224 REMARK 3 S21: -0.0422 S22: -0.1033 S23: -0.4892 REMARK 3 S31: -0.1207 S32: 0.4734 S33: 0.0261 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 66 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.0125 -20.9628 -14.7410 REMARK 3 T TENSOR REMARK 3 T11: 0.1449 T22: 0.1935 REMARK 3 T33: 0.1645 T12: 0.0557 REMARK 3 T13: -0.0103 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 2.0851 L22: 1.4868 REMARK 3 L33: 0.6929 L12: -0.2045 REMARK 3 L13: -0.9230 L23: -0.2863 REMARK 3 S TENSOR REMARK 3 S11: -0.0368 S12: 0.0590 S13: -0.2586 REMARK 3 S21: -0.0228 S22: -0.0673 S23: 0.0772 REMARK 3 S31: 0.0769 S32: -0.0028 S33: 0.0685 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 115 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.6080 -27.9057 -12.0953 REMARK 3 T TENSOR REMARK 3 T11: 0.1529 T22: 0.3626 REMARK 3 T33: 0.1991 T12: 0.1979 REMARK 3 T13: -0.0045 T23: 0.0010 REMARK 3 L TENSOR REMARK 3 L11: 2.9742 L22: 0.5607 REMARK 3 L33: 2.2540 L12: -0.2936 REMARK 3 L13: 1.2236 L23: -0.6488 REMARK 3 S TENSOR REMARK 3 S11: -0.2332 S12: -0.1857 S13: -0.4470 REMARK 3 S21: 0.1838 S22: -0.0053 S23: -0.1185 REMARK 3 S31: 0.2479 S32: 0.2915 S33: -0.0512 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 129 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5758 -10.3980 -8.3740 REMARK 3 T TENSOR REMARK 3 T11: 0.2223 T22: 0.4417 REMARK 3 T33: 0.2926 T12: -0.0327 REMARK 3 T13: -0.1150 T23: -0.1133 REMARK 3 L TENSOR REMARK 3 L11: 2.1917 L22: 3.0600 REMARK 3 L33: 1.8665 L12: -0.9478 REMARK 3 L13: -0.7518 L23: 0.7050 REMARK 3 S TENSOR REMARK 3 S11: -0.0054 S12: -0.4033 S13: 0.4304 REMARK 3 S21: 0.3872 S22: 0.0876 S23: -0.6169 REMARK 3 S31: -0.0976 S32: 0.5058 S33: -0.1575 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 145 THROUGH 161 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.2464 2.7336 -15.9791 REMARK 3 T TENSOR REMARK 3 T11: 0.3482 T22: 0.2601 REMARK 3 T33: 0.4376 T12: -0.1017 REMARK 3 T13: 0.0998 T23: -0.0802 REMARK 3 L TENSOR REMARK 3 L11: 2.5652 L22: 1.8039 REMARK 3 L33: 2.8098 L12: 1.1942 REMARK 3 L13: -0.4749 L23: -2.0592 REMARK 3 S TENSOR REMARK 3 S11: 0.2284 S12: -0.0622 S13: 0.7127 REMARK 3 S21: 0.3802 S22: 0.1439 S23: -0.3942 REMARK 3 S31: -0.9812 S32: 0.5609 S33: -0.4882 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 162 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.2347 5.3562 -26.4997 REMARK 3 T TENSOR REMARK 3 T11: 0.4707 T22: 0.1652 REMARK 3 T33: 0.4763 T12: 0.0960 REMARK 3 T13: 0.2854 T23: 0.1180 REMARK 3 L TENSOR REMARK 3 L11: 0.6488 L22: 2.8308 REMARK 3 L33: 0.1886 L12: 1.0578 REMARK 3 L13: 0.1745 L23: 0.6796 REMARK 3 S TENSOR REMARK 3 S11: 0.0386 S12: 0.0173 S13: 0.1831 REMARK 3 S21: 0.2416 S22: 0.0777 S23: 0.2665 REMARK 3 S31: -0.2494 S32: -0.1436 S33: -0.2743 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 171 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.0799 4.1790 -30.0526 REMARK 3 T TENSOR REMARK 3 T11: 0.3622 T22: 0.1049 REMARK 3 T33: 0.4643 T12: -0.0486 REMARK 3 T13: 0.3024 T23: 0.0903 REMARK 3 L TENSOR REMARK 3 L11: 1.2703 L22: 2.1276 REMARK 3 L33: 2.9319 L12: -0.5955 REMARK 3 L13: -0.6878 L23: -0.3426 REMARK 3 S TENSOR REMARK 3 S11: 0.3039 S12: -0.0250 S13: 0.5016 REMARK 3 S21: -0.0912 S22: 0.0808 S23: -0.3507 REMARK 3 S31: -0.3675 S32: 0.3565 S33: 0.1970 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7S1F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-SEP-21. REMARK 100 THE DEPOSITION ID IS D_1000259450. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.953690 REMARK 200 MONOCHROMATOR : DOUBLE SI WITH SAGITTALY BENT REMARK 200 SECOND CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43413 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.510 REMARK 200 RESOLUTION RANGE LOW (A) : 60.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04200 REMARK 200 FOR THE DATA SET : 20.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.51 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.39700 REMARK 200 R SYM FOR SHELL (I) : 0.39700 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.3.0 REMARK 200 STARTING MODEL: DSBA WT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11-13% PEG 8000, 5-7.5% GLYCEROL, 1 MM REMARK 280 CUCL2, 100 MM SODIUM CACODYLATE, PH 6.2, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.06550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.99250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.06550 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.99250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 453 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 189 REMARK 465 LYS B 189 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 67 O HOH A 301 2.01 REMARK 500 O HOH A 317 O HOH A 396 2.06 REMARK 500 OH TYR B 184 O HOH B 301 2.06 REMARK 500 O HOH A 313 O HOH B 428 2.16 REMARK 500 NE2 GLN B 164 O HOH B 302 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 480 O HOH B 451 3455 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 7 -83.19 -102.41 REMARK 500 LYS B 7 -85.42 -97.83 REMARK 500 GLU B 52 124.10 -38.05 REMARK 500 LYS B 98 -71.91 -101.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 502 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH A 503 DISTANCE = 6.26 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 201 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 1 N REMARK 620 2 ALA B 1 O 80.4 REMARK 620 3 GLU B 4 OE1 168.9 93.1 REMARK 620 4 ASP B 44 OD2 103.1 23.4 69.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 202 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 44 OD2 REMARK 620 2 HOH B 432 O 77.9 REMARK 620 N 1 DBREF 7S1F A 1 189 UNP P0AEG4 DSBA_ECOLI 20 208 DBREF 7S1F B 1 189 UNP P0AEG4 DSBA_ECOLI 20 208 SEQRES 1 A 189 ALA GLN TYR GLU ASP GLY LYS GLN TYR THR THR LEU GLU SEQRES 2 A 189 LYS PRO VAL ALA GLY ALA PRO GLN VAL LEU GLU PHE PHE SEQRES 3 A 189 SER PHE PHE CYS PRO HIS CYS TYR GLN PHE GLU GLU VAL SEQRES 4 A 189 LEU HIS ILE SER ASP ASN VAL LYS LYS LYS LEU PRO GLU SEQRES 5 A 189 GLY VAL LYS MET THR LYS TYR HIS VAL ASN PHE MET GLY SEQRES 6 A 189 GLY ASP LEU GLY LYS ASP LEU THR GLN ALA TRP ALA VAL SEQRES 7 A 189 ALA MET ALA LEU GLY VAL GLU ASP LYS VAL THR VAL PRO SEQRES 8 A 189 LEU PHE GLU GLY VAL GLN LYS THR GLN THR ILE ARG SER SEQRES 9 A 189 ALA SER ASP ILE ARG ASP VAL PHE ILE ASN ALA GLY ILE SEQRES 10 A 189 LYS GLY GLU GLU TYR ASP ALA ALA TRP ASN SER PHE VAL SEQRES 11 A 189 VAL LYS SER LEU VAL ALA GLN GLN GLU LYS ALA ALA ALA SEQRES 12 A 189 ASP VAL GLN LEU ARG GLY VAL PRO ALA MET PHE VAL ASN SEQRES 13 A 189 GLY LYS TYR GLN LEU ASN PRO GLN GLY MET ASP THR SER SEQRES 14 A 189 ASN MET ASP VAL PHE VAL GLN GLN TYR ALA ASP THR VAL SEQRES 15 A 189 LYS TYR LEU SER GLU LYS LYS SEQRES 1 B 189 ALA GLN TYR GLU ASP GLY LYS GLN TYR THR THR LEU GLU SEQRES 2 B 189 LYS PRO VAL ALA GLY ALA PRO GLN VAL LEU GLU PHE PHE SEQRES 3 B 189 SER PHE PHE CYS PRO HIS CYS TYR GLN PHE GLU GLU VAL SEQRES 4 B 189 LEU HIS ILE SER ASP ASN VAL LYS LYS LYS LEU PRO GLU SEQRES 5 B 189 GLY VAL LYS MET THR LYS TYR HIS VAL ASN PHE MET GLY SEQRES 6 B 189 GLY ASP LEU GLY LYS ASP LEU THR GLN ALA TRP ALA VAL SEQRES 7 B 189 ALA MET ALA LEU GLY VAL GLU ASP LYS VAL THR VAL PRO SEQRES 8 B 189 LEU PHE GLU GLY VAL GLN LYS THR GLN THR ILE ARG SER SEQRES 9 B 189 ALA SER ASP ILE ARG ASP VAL PHE ILE ASN ALA GLY ILE SEQRES 10 B 189 LYS GLY GLU GLU TYR ASP ALA ALA TRP ASN SER PHE VAL SEQRES 11 B 189 VAL LYS SER LEU VAL ALA GLN GLN GLU LYS ALA ALA ALA SEQRES 12 B 189 ASP VAL GLN LEU ARG GLY VAL PRO ALA MET PHE VAL ASN SEQRES 13 B 189 GLY LYS TYR GLN LEU ASN PRO GLN GLY MET ASP THR SER SEQRES 14 B 189 ASN MET ASP VAL PHE VAL GLN GLN TYR ALA ASP THR VAL SEQRES 15 B 189 LYS TYR LEU SER GLU LYS LYS HET 5VB A 201 18 HET CU B 201 1 HET CU B 202 1 HET GOL B 203 6 HETNAM 5VB 1-[(3-THIOPHEN-3-YLPHENYL)METHYL]-3~{H}-PYRROL-2-ONE HETNAM CU COPPER (II) ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 5VB C15 H13 N O S FORMUL 4 CU 2(CU 2+) FORMUL 6 GOL C3 H8 O3 FORMUL 7 HOH *363(H2 O) HELIX 1 AA1 CYS A 30 VAL A 39 1 10 HELIX 2 AA2 HIS A 41 LYS A 48 1 8 HELIX 3 AA3 GLY A 65 GLY A 83 1 19 HELIX 4 AA4 VAL A 84 LYS A 98 1 15 HELIX 5 AA5 SER A 104 ALA A 115 1 12 HELIX 6 AA6 LYS A 118 ASN A 127 1 10 HELIX 7 AA7 SER A 128 VAL A 145 1 18 HELIX 8 AA8 PRO A 163 MET A 166 5 4 HELIX 9 AA9 ASN A 170 GLU A 187 1 18 HELIX 10 AB1 CYS B 30 VAL B 39 1 10 HELIX 11 AB2 HIS B 41 LEU B 50 1 10 HELIX 12 AB3 GLY B 65 GLY B 83 1 19 HELIX 13 AB4 VAL B 84 LYS B 98 1 15 HELIX 14 AB5 SER B 104 ALA B 115 1 12 HELIX 15 AB6 LYS B 118 ASN B 127 1 10 HELIX 16 AB7 SER B 128 VAL B 145 1 18 HELIX 17 AB8 PRO B 163 MET B 166 5 4 HELIX 18 AB9 ASN B 170 GLU B 187 1 18 SHEET 1 AA1 5 TYR A 9 THR A 11 0 SHEET 2 AA1 5 TYR A 159 LEU A 161 -1 O GLN A 160 N THR A 10 SHEET 3 AA1 5 ALA A 152 VAL A 155 -1 N VAL A 155 O TYR A 159 SHEET 4 AA1 5 VAL A 22 PHE A 26 -1 N PHE A 25 O ALA A 152 SHEET 5 AA1 5 MET A 56 HIS A 60 1 O THR A 57 N VAL A 22 SHEET 1 AA2 5 TYR B 9 THR B 11 0 SHEET 2 AA2 5 TYR B 159 LEU B 161 -1 O GLN B 160 N THR B 10 SHEET 3 AA2 5 ALA B 152 VAL B 155 -1 N VAL B 155 O TYR B 159 SHEET 4 AA2 5 VAL B 22 PHE B 26 -1 N PHE B 25 O ALA B 152 SHEET 5 AA2 5 MET B 56 HIS B 60 1 O THR B 57 N GLU B 24 SSBOND 1 CYS A 30 CYS A 33 1555 1555 2.07 SSBOND 2 CYS B 30 CYS B 33 1555 1555 2.08 LINK N ALA B 1 CU CU B 201 1555 1555 2.24 LINK O ALA B 1 CU CU B 201 1555 1555 2.01 LINK OE1 GLU B 4 CU CU B 201 1555 1555 2.11 LINK OD2 ASP B 44 CU CU B 201 1555 4444 2.11 LINK OD2 ASP B 44 CU CU B 202 1555 4444 2.37 LINK CU CU B 202 O HOH B 432 1555 4454 2.10 CISPEP 1 VAL A 150 PRO A 151 0 -5.27 CISPEP 2 VAL B 150 PRO B 151 0 -4.41 CRYST1 116.131 63.985 74.333 90.00 126.10 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008611 0.000000 0.006279 0.00000 SCALE2 0.000000 0.015629 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016650 0.00000