HEADER TRANSFERASE/INHIBITOR 02-SEP-21 7S1S TITLE PRMT5/MEP50 CRYSTAL STRUCTURE WITH MTA AND MRTX-1719 BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN ARGININE N-METHYLTRANSFERASE 5; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 72 KDA ICLN-BINDING PROTEIN,HISTONE-ARGININE N- COMPND 5 METHYLTRANSFERASE PRMT5,JAK-BINDING PROTEIN 1,SHK1 KINASE-BINDING COMPND 6 PROTEIN 1 HOMOLOG,SKB1HS; COMPND 7 EC: 2.1.1.320; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: METHYLOSOME PROTEIN 50; COMPND 11 CHAIN: B; COMPND 12 SYNONYM: MEP-50,ANDROGEN RECEPTOR COFACTOR P44,WD REPEAT-CONTAINING COMPND 13 PROTEIN 77,P44/MEP50; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PRMT5, HRMT1L5, IBP72, JBP1, SKB1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: WDR77, MEP50, WD45, HKMT1069, NBLA10071; SOURCE 13 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS PRMT5, MTAP, MTA, METHYL TRANSFERASE, COLLATERAL LETHALITY, SYNTHETIC KEYWDS 2 LETHALITY, FRAGMENT-BASED LEAD DISCOVERY, TRANSFERASE, TRANSFERASE- KEYWDS 3 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.J.GUNN,N.C.THOMAS,J.D.LAWSON,A.IVETAC,S.KULYK,C.R.SMITH,M.A.MARX REVDAT 4 18-OCT-23 7S1S 1 REMARK REVDAT 3 23-FEB-22 7S1S 1 JRNL REVDAT 2 02-FEB-22 7S1S 1 REMARK REVDAT 1 26-JAN-22 7S1S 0 JRNL AUTH C.R.SMITH,R.ARANDA,T.P.BOBINSKI,D.M.BRIERE,A.C.BURNS, JRNL AUTH 2 J.G.CHRISTENSEN,J.CLARINE,L.D.ENGSTROM,R.J.GUNN,A.IVETAC, JRNL AUTH 3 R.JEAN-BAPTISTE,J.M.KETCHAM,M.KOBAYASHI,J.KUEHLER,S.KULYK, JRNL AUTH 4 J.D.LAWSON,K.MOYA,P.OLSON,L.RAHBAEK,N.C.THOMAS,X.WANG, JRNL AUTH 5 L.M.WATERS,M.A.MARX JRNL TITL FRAGMENT-BASED DISCOVERY OF MRTX1719, A SYNTHETIC LETHAL JRNL TITL 2 INHIBITOR OF THE PRMT5•MTA COMPLEX FOR THE TREATMENT JRNL TITL 3 OF MTAP -DELETED CANCERS. JRNL REF J.MED.CHEM. V. 65 1749 2022 JRNL REFN ISSN 0022-2623 JRNL PMID 35041419 JRNL DOI 10.1021/ACS.JMEDCHEM.1C01900 REMARK 2 REMARK 2 RESOLUTION. 2.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.0 REMARK 3 NUMBER OF REFLECTIONS : 34282 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.170 REMARK 3 FREE R VALUE TEST SET COUNT : 1772 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.6400 - 6.1500 0.92 2772 139 0.1646 0.1886 REMARK 3 2 6.1400 - 4.8800 0.98 2815 159 0.1685 0.1701 REMARK 3 3 4.8800 - 4.2600 0.98 2783 165 0.1468 0.1589 REMARK 3 4 4.2600 - 3.8700 0.96 2755 153 0.1704 0.1980 REMARK 3 5 3.8700 - 3.6000 0.96 2725 135 0.2116 0.2481 REMARK 3 6 3.6000 - 3.3800 0.97 2740 155 0.2299 0.2653 REMARK 3 7 3.3800 - 3.2100 0.98 2797 126 0.2585 0.3343 REMARK 3 8 3.2100 - 3.0700 0.97 2712 149 0.2822 0.3121 REMARK 3 9 3.0700 - 2.9600 0.91 2567 119 0.3123 0.3454 REMARK 3 10 2.9600 - 2.8500 0.81 2283 147 0.3075 0.3651 REMARK 3 11 2.8500 - 2.7700 0.75 2077 133 0.3121 0.3548 REMARK 3 12 2.7600 - 2.6900 0.69 1942 103 0.3341 0.3297 REMARK 3 13 2.6900 - 2.6200 0.55 1542 89 0.3564 0.4267 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.407 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.765 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.67 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 7598 REMARK 3 ANGLE : 0.498 10361 REMARK 3 CHIRALITY : 0.043 1138 REMARK 3 PLANARITY : 0.004 1337 REMARK 3 DIHEDRAL : 13.642 2740 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -28.6810 -76.2635 -24.6909 REMARK 3 T TENSOR REMARK 3 T11: 0.2449 T22: 0.3984 REMARK 3 T33: 0.3385 T12: 0.0542 REMARK 3 T13: 0.0483 T23: -0.0386 REMARK 3 L TENSOR REMARK 3 L11: 0.0857 L22: 0.1722 REMARK 3 L33: 0.8617 L12: -0.0649 REMARK 3 L13: 0.0136 L23: -0.1015 REMARK 3 S TENSOR REMARK 3 S11: 0.0347 S12: 0.0523 S13: -0.0022 REMARK 3 S21: -0.1750 S22: -0.0440 S23: 0.0191 REMARK 3 S31: 0.0661 S32: 0.2773 S33: -0.0006 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7S1S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-SEP-21. REMARK 100 THE DEPOSITION ID IS D_1000259259. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34297 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.2 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7S0U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM CITRATE PH 5.4, 11% PEG REMARK 280 4000, 50 MM SODIUM ACETATE, VAPOR DIFFUSION, TEMPERATURE 281K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 51.57000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 69.04750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 89.40000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 51.57000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 69.04750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 89.40000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 51.57000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 69.04750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 89.40000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 51.57000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 69.04750 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 89.40000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ASP A -6 REMARK 465 TYR A -5 REMARK 465 LYS A -4 REMARK 465 ASP A -3 REMARK 465 ASP A -2 REMARK 465 ASP A -1 REMARK 465 ASP A 0 REMARK 465 LYS A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 MET A 4 REMARK 465 ALA A 5 REMARK 465 VAL A 6 REMARK 465 GLY A 7 REMARK 465 GLY A 8 REMARK 465 ALA A 9 REMARK 465 GLY A 10 REMARK 465 GLY A 11 REMARK 465 SER A 12 REMARK 465 MET B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 HIS B 1 REMARK 465 ARG B 2 REMARK 465 LYS B 3 REMARK 465 GLU B 4 REMARK 465 THR B 5 REMARK 465 PRO B 6 REMARK 465 PRO B 7 REMARK 465 PRO B 8 REMARK 465 LEU B 9 REMARK 465 VAL B 10 REMARK 465 PRO B 11 REMARK 465 PRO B 12 REMARK 465 ALA B 13 REMARK 465 ALA B 14 REMARK 465 ARG B 15 REMARK 465 GLU B 16 REMARK 465 TRP B 17 REMARK 465 ASN B 18 REMARK 465 CYS B 208 REMARK 465 SER B 209 REMARK 465 ALA B 210 REMARK 465 PRO B 211 REMARK 465 LYS B 243 REMARK 465 SER B 244 REMARK 465 THR B 245 REMARK 465 SER B 246 REMARK 465 CYS B 247 REMARK 465 GLU B 330 REMARK 465 PRO B 331 REMARK 465 LEU B 332 REMARK 465 PRO B 333 REMARK 465 ALA B 334 REMARK 465 PRO B 335 REMARK 465 GLY B 336 REMARK 465 PRO B 337 REMARK 465 ALA B 338 REMARK 465 SER B 339 REMARK 465 VAL B 340 REMARK 465 THR B 341 REMARK 465 GLU B 342 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 13 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 274 CG CD OE1 OE2 REMARK 470 ASN A 295 CG OD1 ND2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 35 NZ REMARK 480 LYS A 51 NZ REMARK 480 ARG A 76 CZ NH1 NH2 REMARK 480 LYS A 95 CE NZ REMARK 480 LYS A 98 NZ REMARK 480 LYS A 240 CD CE NZ REMARK 480 LYS A 241 CE NZ REMARK 480 LYS A 248 CE NZ REMARK 480 MET A 249 SD CE REMARK 480 LYS A 259 NZ REMARK 480 LYS A 275 NZ REMARK 480 LYS A 302 CE NZ REMARK 480 LYS A 329 CE NZ REMARK 480 ILE A 332 CD1 REMARK 480 ILE A 341 CD1 REMARK 480 LYS A 354 NZ REMARK 480 LYS A 380 CE NZ REMARK 480 LYS A 387 NZ REMARK 480 GLU A 422 CD OE1 OE2 REMARK 480 ARG A 526 CZ NH1 NH2 REMARK 480 ARG A 593 CZ NH1 NH2 REMARK 480 LYS A 610 CE NZ REMARK 480 LEU B 19 CD1 CD2 REMARK 480 ASN B 22 CG OD1 ND2 REMARK 480 ARG B 92 CZ NH1 NH2 REMARK 480 ILE B 94 CD1 REMARK 480 GLU B 110 CD OE1 OE2 REMARK 480 LYS B 118 CE NZ REMARK 480 LYS B 121 NZ REMARK 480 GLN B 156 CD OE1 NE2 REMARK 480 LYS B 179 NZ REMARK 480 GLN B 223 CD OE1 NE2 REMARK 480 GLU B 226 CD OE1 OE2 REMARK 480 SER B 267 OG REMARK 480 VAL B 268 CG1 CG2 REMARK 480 SER B 285 OG REMARK 480 LEU B 290 CD1 CD2 REMARK 480 LEU B 312 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 296 N PHE A 300 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 55 -51.04 -128.99 REMARK 500 THR A 67 -165.62 -170.63 REMARK 500 THR A 144 73.54 -117.20 REMARK 500 ASN A 290 79.01 -107.83 REMARK 500 PRO A 294 132.36 -31.82 REMARK 500 ALA A 296 -74.73 65.87 REMARK 500 PHE A 300 -70.51 -27.11 REMARK 500 LYS A 329 35.87 -87.94 REMARK 500 GLU A 408 -68.16 -126.70 REMARK 500 ALA A 441 -86.68 72.98 REMARK 500 LEU A 445 35.30 73.82 REMARK 500 SER A 477 93.55 -168.43 REMARK 500 ASP A 491 51.80 -115.92 REMARK 500 HIS A 507 -72.61 -126.93 REMARK 500 CYS A 518 -71.76 -117.98 REMARK 500 TYR A 560 118.65 -166.68 REMARK 500 GLN A 561 -108.59 58.07 REMARK 500 TRP A 579 102.95 74.72 REMARK 500 ASN A 607 -161.60 -129.59 REMARK 500 ARG B 37 -168.47 -117.55 REMARK 500 SER B 100 2.96 -66.54 REMARK 500 ILE B 147 -0.81 83.34 REMARK 500 ARG B 164 68.21 -114.97 REMARK 500 THR B 197 0.04 -65.25 REMARK 500 ALA B 219 113.86 -160.98 REMARK 500 GLU B 226 32.20 -92.76 REMARK 500 ASP B 284 -160.70 -106.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7S0U RELATED DB: PDB REMARK 900 RELATED ID: 7S1P RELATED DB: PDB REMARK 900 RELATED ID: 7S1Q RELATED DB: PDB REMARK 900 RELATED ID: 7S1R RELATED DB: PDB REMARK 900 RELATED ID: 7SES RELATED DB: PDB REMARK 900 RELATED ID: 7SER RELATED DB: PDB DBREF 7S1S A 2 637 UNP O14744 ANM5_HUMAN 2 637 DBREF 7S1S B 2 342 UNP Q9BQA1 MEP50_HUMAN 2 342 SEQADV 7S1S MET A -7 UNP O14744 INITIATING METHIONINE SEQADV 7S1S ASP A -6 UNP O14744 EXPRESSION TAG SEQADV 7S1S TYR A -5 UNP O14744 EXPRESSION TAG SEQADV 7S1S LYS A -4 UNP O14744 EXPRESSION TAG SEQADV 7S1S ASP A -3 UNP O14744 EXPRESSION TAG SEQADV 7S1S ASP A -2 UNP O14744 EXPRESSION TAG SEQADV 7S1S ASP A -1 UNP O14744 EXPRESSION TAG SEQADV 7S1S ASP A 0 UNP O14744 EXPRESSION TAG SEQADV 7S1S LYS A 1 UNP O14744 EXPRESSION TAG SEQADV 7S1S MET B -7 UNP Q9BQA1 INITIATING METHIONINE SEQADV 7S1S HIS B -6 UNP Q9BQA1 EXPRESSION TAG SEQADV 7S1S HIS B -5 UNP Q9BQA1 EXPRESSION TAG SEQADV 7S1S HIS B -4 UNP Q9BQA1 EXPRESSION TAG SEQADV 7S1S HIS B -3 UNP Q9BQA1 EXPRESSION TAG SEQADV 7S1S HIS B -2 UNP Q9BQA1 EXPRESSION TAG SEQADV 7S1S HIS B -1 UNP Q9BQA1 EXPRESSION TAG SEQADV 7S1S HIS B 0 UNP Q9BQA1 EXPRESSION TAG SEQADV 7S1S HIS B 1 UNP Q9BQA1 EXPRESSION TAG SEQRES 1 A 645 MET ASP TYR LYS ASP ASP ASP ASP LYS ALA ALA MET ALA SEQRES 2 A 645 VAL GLY GLY ALA GLY GLY SER ARG VAL SER SER GLY ARG SEQRES 3 A 645 ASP LEU ASN CYS VAL PRO GLU ILE ALA ASP THR LEU GLY SEQRES 4 A 645 ALA VAL ALA LYS GLN GLY PHE ASP PHE LEU CYS MET PRO SEQRES 5 A 645 VAL PHE HIS PRO ARG PHE LYS ARG GLU PHE ILE GLN GLU SEQRES 6 A 645 PRO ALA LYS ASN ARG PRO GLY PRO GLN THR ARG SER ASP SEQRES 7 A 645 LEU LEU LEU SER GLY ARG ASP TRP ASN THR LEU ILE VAL SEQRES 8 A 645 GLY LYS LEU SER PRO TRP ILE ARG PRO ASP SER LYS VAL SEQRES 9 A 645 GLU LYS ILE ARG ARG ASN SER GLU ALA ALA MET LEU GLN SEQRES 10 A 645 GLU LEU ASN PHE GLY ALA TYR LEU GLY LEU PRO ALA PHE SEQRES 11 A 645 LEU LEU PRO LEU ASN GLN GLU ASP ASN THR ASN LEU ALA SEQRES 12 A 645 ARG VAL LEU THR ASN HIS ILE HIS THR GLY HIS HIS SER SEQRES 13 A 645 SER MET PHE TRP MET ARG VAL PRO LEU VAL ALA PRO GLU SEQRES 14 A 645 ASP LEU ARG ASP ASP ILE ILE GLU ASN ALA PRO THR THR SEQRES 15 A 645 HIS THR GLU GLU TYR SER GLY GLU GLU LYS THR TRP MET SEQRES 16 A 645 TRP TRP HIS ASN PHE ARG THR LEU CYS ASP TYR SER LYS SEQRES 17 A 645 ARG ILE ALA VAL ALA LEU GLU ILE GLY ALA ASP LEU PRO SEQRES 18 A 645 SER ASN HIS VAL ILE ASP ARG TRP LEU GLY GLU PRO ILE SEQRES 19 A 645 LYS ALA ALA ILE LEU PRO THR SER ILE PHE LEU THR ASN SEQRES 20 A 645 LYS LYS GLY PHE PRO VAL LEU SER LYS MET HIS GLN ARG SEQRES 21 A 645 LEU ILE PHE ARG LEU LEU LYS LEU GLU VAL GLN PHE ILE SEQRES 22 A 645 ILE THR GLY THR ASN HIS HIS SER GLU LYS GLU PHE CYS SEQRES 23 A 645 SER TYR LEU GLN TYR LEU GLU TYR LEU SER GLN ASN ARG SEQRES 24 A 645 PRO PRO PRO ASN ALA TYR GLU LEU PHE ALA LYS GLY TYR SEQRES 25 A 645 GLU ASP TYR LEU GLN SER PRO LEU GLN PRO LEU MET ASP SEQRES 26 A 645 ASN LEU GLU SER GLN THR TYR GLU VAL PHE GLU LYS ASP SEQRES 27 A 645 PRO ILE LYS TYR SER GLN TYR GLN GLN ALA ILE TYR LYS SEQRES 28 A 645 CYS LEU LEU ASP ARG VAL PRO GLU GLU GLU LYS ASP THR SEQRES 29 A 645 ASN VAL GLN VAL LEU MET VAL LEU GLY ALA GLY ARG GLY SEQRES 30 A 645 PRO LEU VAL ASN ALA SER LEU ARG ALA ALA LYS GLN ALA SEQRES 31 A 645 ASP ARG ARG ILE LYS LEU TYR ALA VAL GLU LYS ASN PRO SEQRES 32 A 645 ASN ALA VAL VAL THR LEU GLU ASN TRP GLN PHE GLU GLU SEQRES 33 A 645 TRP GLY SER GLN VAL THR VAL VAL SER SER ASP MET ARG SEQRES 34 A 645 GLU TRP VAL ALA PRO GLU LYS ALA ASP ILE ILE VAL SER SEQRES 35 A 645 GLU LEU LEU GLY SER PHE ALA ASP ASN GLU LEU SER PRO SEQRES 36 A 645 GLU CYS LEU ASP GLY ALA GLN HIS PHE LEU LYS ASP ASP SEQRES 37 A 645 GLY VAL SER ILE PRO GLY GLU TYR THR SER PHE LEU ALA SEQRES 38 A 645 PRO ILE SER SER SER LYS LEU TYR ASN GLU VAL ARG ALA SEQRES 39 A 645 CYS ARG GLU LYS ASP ARG ASP PRO GLU ALA GLN PHE GLU SEQRES 40 A 645 MET PRO TYR VAL VAL ARG LEU HIS ASN PHE HIS GLN LEU SEQRES 41 A 645 SER ALA PRO GLN PRO CYS PHE THR PHE SER HIS PRO ASN SEQRES 42 A 645 ARG ASP PRO MET ILE ASP ASN ASN ARG TYR CYS THR LEU SEQRES 43 A 645 GLU PHE PRO VAL GLU VAL ASN THR VAL LEU HIS GLY PHE SEQRES 44 A 645 ALA GLY TYR PHE GLU THR VAL LEU TYR GLN ASP ILE THR SEQRES 45 A 645 LEU SER ILE ARG PRO GLU THR HIS SER PRO GLY MET PHE SEQRES 46 A 645 SER TRP PHE PRO ILE LEU PHE PRO ILE LYS GLN PRO ILE SEQRES 47 A 645 THR VAL ARG GLU GLY GLN THR ILE CYS VAL ARG PHE TRP SEQRES 48 A 645 ARG CYS SER ASN SER LYS LYS VAL TRP TYR GLU TRP ALA SEQRES 49 A 645 VAL THR ALA PRO VAL CYS SER ALA ILE HIS ASN PRO THR SEQRES 50 A 645 GLY ARG SER TYR THR ILE GLY LEU SEQRES 1 B 350 MET HIS HIS HIS HIS HIS HIS HIS HIS ARG LYS GLU THR SEQRES 2 B 350 PRO PRO PRO LEU VAL PRO PRO ALA ALA ARG GLU TRP ASN SEQRES 3 B 350 LEU PRO PRO ASN ALA PRO ALA CYS MET GLU ARG GLN LEU SEQRES 4 B 350 GLU ALA ALA ARG TYR ARG SER ASP GLY ALA LEU LEU LEU SEQRES 5 B 350 GLY ALA SER SER LEU SER GLY ARG CYS TRP ALA GLY SER SEQRES 6 B 350 LEU TRP LEU PHE LYS ASP PRO CYS ALA ALA PRO ASN GLU SEQRES 7 B 350 GLY PHE CYS SER ALA GLY VAL GLN THR GLU ALA GLY VAL SEQRES 8 B 350 ALA ASP LEU THR TRP VAL GLY GLU ARG GLY ILE LEU VAL SEQRES 9 B 350 ALA SER ASP SER GLY ALA VAL GLU LEU TRP GLU LEU ASP SEQRES 10 B 350 GLU ASN GLU THR LEU ILE VAL SER LYS PHE CYS LYS TYR SEQRES 11 B 350 GLU HIS ASP ASP ILE VAL SER THR VAL SER VAL LEU SER SEQRES 12 B 350 SER GLY THR GLN ALA VAL SER GLY SER LYS ASP ILE CYS SEQRES 13 B 350 ILE LYS VAL TRP ASP LEU ALA GLN GLN VAL VAL LEU SER SEQRES 14 B 350 SER TYR ARG ALA HIS ALA ALA GLN VAL THR CYS VAL ALA SEQRES 15 B 350 ALA SER PRO HIS LYS ASP SER VAL PHE LEU SER CYS SER SEQRES 16 B 350 GLU ASP ASN ARG ILE LEU LEU TRP ASP THR ARG CYS PRO SEQRES 17 B 350 LYS PRO ALA SER GLN ILE GLY CYS SER ALA PRO GLY TYR SEQRES 18 B 350 LEU PRO THR SER LEU ALA TRP HIS PRO GLN GLN SER GLU SEQRES 19 B 350 VAL PHE VAL PHE GLY ASP GLU ASN GLY THR VAL SER LEU SEQRES 20 B 350 VAL ASP THR LYS SER THR SER CYS VAL LEU SER SER ALA SEQRES 21 B 350 VAL HIS SER GLN CYS VAL THR GLY LEU VAL PHE SER PRO SEQRES 22 B 350 HIS SER VAL PRO PHE LEU ALA SER LEU SER GLU ASP CYS SEQRES 23 B 350 SER LEU ALA VAL LEU ASP SER SER LEU SER GLU LEU PHE SEQRES 24 B 350 ARG SER GLN ALA HIS ARG ASP PHE VAL ARG ASP ALA THR SEQRES 25 B 350 TRP SER PRO LEU ASN HIS SER LEU LEU THR THR VAL GLY SEQRES 26 B 350 TRP ASP HIS GLN VAL VAL HIS HIS VAL VAL PRO THR GLU SEQRES 27 B 350 PRO LEU PRO ALA PRO GLY PRO ALA SER VAL THR GLU HET MTA A 701 20 HET 85K A 702 52 HETNAM MTA 5'-DEOXY-5'-METHYLTHIOADENOSINE HETNAM 85K (7-{(5M)-5-[3-CHLORO-6-CYANO-5-(CYCLOPROPYLOXY)-2- HETNAM 2 85K FLUOROPHENYL]-1-METHYL-1H-PYRAZOL-4-YL}-4-OXO-3,4- HETNAM 3 85K DIHYDROPHTHALAZIN-1-YL)METHANAMINIUM FORMUL 3 MTA C11 H15 N5 O3 S FORMUL 4 85K C23 H19 CL F N6 O2 1+ FORMUL 5 HOH *64(H2 O) HELIX 1 AA1 GLU A 25 GLY A 37 1 13 HELIX 2 AA2 PRO A 58 ARG A 62 5 5 HELIX 3 AA3 SER A 69 LEU A 73 5 5 HELIX 4 AA4 SER A 74 LEU A 81 1 8 HELIX 5 AA5 VAL A 96 LEU A 117 1 22 HELIX 6 AA6 ASN A 131 HIS A 143 1 13 HELIX 7 AA7 ALA A 159 ARG A 164 5 6 HELIX 8 AA8 SER A 180 GLU A 182 5 3 HELIX 9 AA9 GLU A 183 CYS A 196 1 14 HELIX 10 AB1 SER A 214 ARG A 220 1 7 HELIX 11 AB2 SER A 234 PHE A 236 5 3 HELIX 12 AB3 SER A 247 LEU A 260 1 14 HELIX 13 AB4 PHE A 277 ASN A 290 1 14 HELIX 14 AB5 ALA A 296 ALA A 301 1 6 HELIX 15 AB6 LYS A 302 GLU A 305 5 4 HELIX 16 AB7 GLU A 320 LYS A 329 1 10 HELIX 17 AB8 ASP A 330 VAL A 349 1 20 HELIX 18 AB9 PRO A 350 LYS A 354 5 5 HELIX 19 AC1 GLY A 369 ASP A 383 1 15 HELIX 20 AC2 ASN A 394 GLU A 408 1 15 HELIX 21 AC3 TRP A 409 SER A 411 5 3 HELIX 22 AC4 ALA A 441 GLU A 444 5 4 HELIX 23 AC5 LEU A 445 GLN A 454 1 10 HELIX 24 AC6 SER A 477 ALA A 486 1 10 HELIX 25 AC7 GLU A 495 GLU A 499 5 5 HELIX 26 AC8 ARG A 568 HIS A 572 5 5 HELIX 27 AC9 ASN A 627 ARG A 631 5 5 HELIX 28 AD1 ASP B 63 ALA B 67 5 5 HELIX 29 AD2 ASN B 69 CYS B 73 5 5 SHEET 1 AA1 9 SER A 16 ASP A 19 0 SHEET 2 AA1 9 PHE A 40 PRO A 44 1 O CYS A 42 N ARG A 18 SHEET 3 AA1 9 ILE A 82 LYS A 85 1 O VAL A 83 N LEU A 41 SHEET 4 AA1 9 ALA A 121 PRO A 125 1 O LEU A 123 N GLY A 84 SHEET 5 AA1 9 MET A 150 PRO A 156 1 O ARG A 154 N LEU A 124 SHEET 6 AA1 9 ILE A 202 GLU A 207 1 O GLU A 207 N VAL A 155 SHEET 7 AA1 9 ILE A 226 PRO A 232 1 O ILE A 230 N LEU A 206 SHEET 8 AA1 9 GLN A 263 THR A 267 1 O ILE A 265 N LEU A 231 SHEET 9 AA1 9 SER A 16 ASP A 19 1 N GLY A 17 O ILE A 266 SHEET 1 AA2 2 LEU A 237 THR A 238 0 SHEET 2 AA2 2 PRO A 244 VAL A 245 -1 O VAL A 245 N LEU A 237 SHEET 1 AA3 5 VAL A 413 VAL A 416 0 SHEET 2 AA3 5 ARG A 385 VAL A 391 1 N ALA A 390 O THR A 414 SHEET 3 AA3 5 VAL A 358 LEU A 364 1 N GLN A 359 O LYS A 387 SHEET 4 AA3 5 ALA A 429 SER A 434 1 O VAL A 433 N LEU A 364 SHEET 5 AA3 5 LEU A 457 ILE A 464 1 O ILE A 464 N ILE A 432 SHEET 1 AA4 5 TYR A 502 VAL A 503 0 SHEET 2 AA4 5 ILE A 582 VAL A 592 -1 O LEU A 583 N TYR A 502 SHEET 3 AA4 5 THR A 546 TYR A 560 -1 N LEU A 548 O ILE A 590 SHEET 4 AA4 5 GLU A 467 SER A 476 -1 N THR A 469 O GLU A 556 SHEET 5 AA4 5 GLN A 516 SER A 522 -1 O CYS A 518 N SER A 470 SHEET 1 AA5 4 HIS A 510 GLN A 511 0 SHEET 2 AA5 4 GLU A 467 SER A 476 -1 N SER A 476 O HIS A 510 SHEET 3 AA5 4 THR A 546 TYR A 560 -1 O GLU A 556 N THR A 469 SHEET 4 AA5 4 ILE A 563 SER A 566 -1 O LEU A 565 N THR A 557 SHEET 1 AA6 4 ARG A 534 PRO A 541 0 SHEET 2 AA6 4 THR A 597 SER A 606 -1 O ILE A 598 N PHE A 540 SHEET 3 AA6 4 LYS A 610 ALA A 619 -1 O ALA A 616 N ARG A 601 SHEET 4 AA6 4 ILE A 635 GLY A 636 -1 O ILE A 635 N VAL A 611 SHEET 1 AA7 4 GLN B 30 TYR B 36 0 SHEET 2 AA7 4 LEU B 42 SER B 47 -1 O SER B 47 N GLN B 30 SHEET 3 AA7 4 GLY B 56 PHE B 61 -1 O PHE B 61 N LEU B 42 SHEET 4 AA7 4 ALA B 75 THR B 79 -1 O THR B 79 N GLY B 56 SHEET 1 AA8 4 VAL B 83 VAL B 89 0 SHEET 2 AA8 4 GLY B 93 SER B 98 -1 O ALA B 97 N ASP B 85 SHEET 3 AA8 4 VAL B 103 LEU B 108 -1 O GLU B 104 N VAL B 96 SHEET 4 AA8 4 ILE B 115 LYS B 121 -1 O LYS B 118 N LEU B 105 SHEET 1 AA9 4 VAL B 128 VAL B 133 0 SHEET 2 AA9 4 GLN B 139 SER B 144 -1 O VAL B 141 N SER B 132 SHEET 3 AA9 4 ILE B 149 ASP B 153 -1 O TRP B 152 N ALA B 140 SHEET 4 AA9 4 VAL B 158 TYR B 163 -1 O TYR B 163 N ILE B 149 SHEET 1 AB1 4 VAL B 170 ALA B 175 0 SHEET 2 AB1 4 VAL B 182 SER B 187 -1 O LEU B 184 N ALA B 174 SHEET 3 AB1 4 ILE B 192 ASP B 196 -1 O LEU B 193 N SER B 185 SHEET 4 AB1 4 ALA B 203 GLN B 205 -1 O SER B 204 N LEU B 194 SHEET 1 AB2 4 PRO B 215 TRP B 220 0 SHEET 2 AB2 4 VAL B 227 ASP B 232 -1 O GLY B 231 N THR B 216 SHEET 3 AB2 4 THR B 236 ASP B 241 -1 O VAL B 240 N PHE B 228 SHEET 4 AB2 4 LEU B 249 ALA B 252 -1 O LEU B 249 N LEU B 239 SHEET 1 AB3 4 VAL B 258 PHE B 263 0 SHEET 2 AB3 4 LEU B 271 SER B 275 -1 O ALA B 272 N VAL B 262 SHEET 3 AB3 4 LEU B 280 LEU B 283 -1 O LEU B 283 N LEU B 271 SHEET 4 AB3 4 GLU B 289 SER B 293 -1 O LEU B 290 N VAL B 282 SHEET 1 AB4 3 VAL B 300 TRP B 305 0 SHEET 2 AB4 3 LEU B 312 GLY B 317 -1 O THR B 314 N THR B 304 SHEET 3 AB4 3 VAL B 322 VAL B 326 -1 O HIS B 325 N LEU B 313 CISPEP 1 GLU A 57 PRO A 58 0 2.12 CISPEP 2 GLY A 64 PRO A 65 0 -1.75 CISPEP 3 ILE A 464 PRO A 465 0 4.40 CISPEP 4 HIS A 523 PRO A 524 0 -0.34 CISPEP 5 ALA A 619 PRO A 620 0 3.22 CISPEP 6 ALA B 67 PRO B 68 0 0.94 CRYST1 103.140 138.095 178.800 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009696 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007241 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005593 0.00000