HEADER TRANSFERASE 03-SEP-21 7S2H TITLE CRYSTAL STRUCTURE OF TRYPANOSOMA CRUZI GLUCOKINASE IN THE APO FORM TITLE 2 (OPEN CONFORMATION) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOKINASE 1, PUTATIVE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.1.2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA CRUZI (STRAIN CL BRENER); SOURCE 3 ORGANISM_TAXID: 353153; SOURCE 4 STRAIN: CL BRENER; SOURCE 5 GENE: TC00.1047053510187.100; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRYPANOSOMA CRUZI, CHAGAS DISEASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.P.KEARNS,L.DANESHIAN,P.D.SWARTZ,S.M.CAREY,M.CHRUSZCZ,E.L.D'ANTONIO REVDAT 2 18-OCT-23 7S2H 1 REMARK REVDAT 1 06-OCT-21 7S2H 0 JRNL AUTH S.P.KEARNS,L.DANESHIAN,P.D.SWARTZ,S.M.CAREY,M.CHRUSZCZ, JRNL AUTH 2 E.L.D'ANTONIO JRNL TITL CRYSTAL STRUCTURE OF TRYPANOSOMA CRUZI GLUCOKINASE IN THE JRNL TITL 2 APO FORM (OPEN CONFORMATION) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 68906 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3676 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4581 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.2430 REMARK 3 BIN FREE R VALUE SET COUNT : 264 REMARK 3 BIN FREE R VALUE : 0.2520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5642 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 548 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.21000 REMARK 3 B22 (A**2) : 0.93000 REMARK 3 B33 (A**2) : 2.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.114 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.107 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.077 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.244 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5830 ; 0.013 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5401 ; 0.036 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7907 ; 1.719 ; 1.637 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12503 ; 2.347 ; 1.567 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 745 ; 6.316 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 293 ;31.636 ;21.741 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 966 ;12.638 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 41 ;15.309 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 735 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6623 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1228 ; 0.019 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A -1 365 B -1 365 11228 0.110 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 202 REMARK 3 ORIGIN FOR THE GROUP (A): 26.9374 -13.2557 24.3068 REMARK 3 T TENSOR REMARK 3 T11: 0.1655 T22: 0.0343 REMARK 3 T33: 0.0118 T12: -0.0138 REMARK 3 T13: 0.0035 T23: 0.0122 REMARK 3 L TENSOR REMARK 3 L11: 1.0147 L22: 0.5570 REMARK 3 L33: 0.6096 L12: -0.5693 REMARK 3 L13: 0.6361 L23: -0.3204 REMARK 3 S TENSOR REMARK 3 S11: -0.0426 S12: 0.0009 S13: -0.0523 REMARK 3 S21: 0.0470 S22: 0.0519 S23: 0.0717 REMARK 3 S31: -0.0097 S32: 0.0516 S33: -0.0094 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 203 A 367 REMARK 3 ORIGIN FOR THE GROUP (A): 7.3384 3.3160 22.5003 REMARK 3 T TENSOR REMARK 3 T11: 0.1216 T22: 0.0666 REMARK 3 T33: 0.0217 T12: -0.0230 REMARK 3 T13: 0.0023 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.4241 L22: 0.3839 REMARK 3 L33: 0.3431 L12: -0.0706 REMARK 3 L13: 0.0160 L23: 0.0837 REMARK 3 S TENSOR REMARK 3 S11: 0.0042 S12: -0.1185 S13: -0.0443 REMARK 3 S21: 0.0212 S22: -0.0143 S23: 0.0811 REMARK 3 S31: -0.0001 S32: -0.0591 S33: 0.0101 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 133 REMARK 3 ORIGIN FOR THE GROUP (A): 22.5132 -7.3313 -19.7117 REMARK 3 T TENSOR REMARK 3 T11: 0.1140 T22: 0.0126 REMARK 3 T33: 0.0291 T12: -0.0016 REMARK 3 T13: -0.0222 T23: 0.0083 REMARK 3 L TENSOR REMARK 3 L11: 3.9893 L22: 1.6437 REMARK 3 L33: 2.0105 L12: -0.8119 REMARK 3 L13: -1.0927 L23: 0.0345 REMARK 3 S TENSOR REMARK 3 S11: -0.0340 S12: 0.0399 S13: -0.0639 REMARK 3 S21: -0.1583 S22: 0.0517 S23: 0.2166 REMARK 3 S31: 0.1194 S32: -0.1367 S33: -0.0178 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 134 B 366 REMARK 3 ORIGIN FOR THE GROUP (A): 22.7456 14.1732 0.1386 REMARK 3 T TENSOR REMARK 3 T11: 0.1191 T22: 0.0316 REMARK 3 T33: 0.0105 T12: -0.0004 REMARK 3 T13: -0.0016 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 0.5060 L22: 0.5626 REMARK 3 L33: 0.4315 L12: -0.1174 REMARK 3 L13: -0.0228 L23: -0.1420 REMARK 3 S TENSOR REMARK 3 S11: 0.0377 S12: 0.0255 S13: 0.0225 REMARK 3 S21: -0.0204 S22: -0.0237 S23: -0.0165 REMARK 3 S31: -0.0170 S32: 0.0380 S33: -0.0140 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7S2H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-SEP-21. REMARK 100 THE DEPOSITION ID IS D_1000259501. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72625 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 41.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2Q2R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0 UL OF 7.4 MG/ML WT-TCGLCK IN REMARK 280 BUFFERED SOLUTION [50 MM HEPES (PH 7.5), 0.2 M IMIDAZOLE, 2 MM REMARK 280 MAGNESIUM CHLORIDE] + 1.0 UL OF PRECIPITANT SOLUTION [14% (W/V) REMARK 280 PEG 3350, 0.1 M SODIUM CITRATE TRIBASIC] WAS EQUILIBRATED REMARK 280 AGAINST 85 UL OF THE PRECIPITANT SOLUTION USING A 96-WELL REMARK 280 SITTING-DROP PLATE (INNOVADYNE), VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.46000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -13 REMARK 465 GLY A -12 REMARK 465 ARG A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 GLY A -2 REMARK 465 MET B -13 REMARK 465 GLY B -12 REMARK 465 ARG B -11 REMARK 465 GLY B -10 REMARK 465 SER B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 GLY B -2 REMARK 465 SER B 367 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A -1 CG SD CE REMARK 470 LYS A 44 CG CD CE NZ REMARK 470 LYS A 58 CG CD CE NZ REMARK 470 LYS A 60 CG CD CE NZ REMARK 470 LYS A 108 CG CD CE NZ REMARK 470 GLN A 166 CG CD OE1 NE2 REMARK 470 GLN A 199 CG CD OE1 NE2 REMARK 470 GLN A 200 CG CD OE1 NE2 REMARK 470 LYS A 323 CG CD CE NZ REMARK 470 ARG A 327 CG CD NE CZ NH1 NH2 REMARK 470 MET B -1 CG SD CE REMARK 470 LYS B 44 CG CD CE NZ REMARK 470 ASN B 45 CG OD1 ND2 REMARK 470 LYS B 58 CG CD CE NZ REMARK 470 GLU B 74 CG CD OE1 OE2 REMARK 470 LYS B 82 CG CD CE NZ REMARK 470 LYS B 108 CG CD CE NZ REMARK 470 ARG B 253 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 157 CD GLU A 157 OE1 -0.069 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 162 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 162 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 99 -14.55 -142.22 REMARK 500 LEU A 187 90.10 -165.40 REMARK 500 ARG A 216 -109.23 -121.36 REMARK 500 ARG B 216 -105.38 -125.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG A 36 10.77 REMARK 500 ARG A 36 11.16 REMARK 500 PRO B 319 10.35 REMARK 500 PRO B 319 10.37 REMARK 500 GLN B 320 -11.47 REMARK 500 GLN B 320 -11.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 402 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 53 OG1 REMARK 620 2 ARG A 54 O 110.1 REMARK 620 3 FLC A 401 OA1 95.6 148.4 REMARK 620 4 FLC A 401 OB1 80.1 86.0 80.4 REMARK 620 5 FLC A 401 OHB 144.3 72.5 75.9 64.4 REMARK 620 6 HOH A 721 O 106.0 95.6 94.6 172.5 109.1 REMARK 620 N 1 2 3 4 5 DBREF 7S2H A 1 367 UNP Q4E4E1 Q4E4E1_TRYCC 1 367 DBREF 7S2H B 1 367 UNP Q4E4E1 Q4E4E1_TRYCC 1 367 SEQADV 7S2H MET A -13 UNP Q4E4E1 INITIATING METHIONINE SEQADV 7S2H GLY A -12 UNP Q4E4E1 EXPRESSION TAG SEQADV 7S2H ARG A -11 UNP Q4E4E1 EXPRESSION TAG SEQADV 7S2H GLY A -10 UNP Q4E4E1 EXPRESSION TAG SEQADV 7S2H SER A -9 UNP Q4E4E1 EXPRESSION TAG SEQADV 7S2H HIS A -8 UNP Q4E4E1 EXPRESSION TAG SEQADV 7S2H HIS A -7 UNP Q4E4E1 EXPRESSION TAG SEQADV 7S2H HIS A -6 UNP Q4E4E1 EXPRESSION TAG SEQADV 7S2H HIS A -5 UNP Q4E4E1 EXPRESSION TAG SEQADV 7S2H HIS A -4 UNP Q4E4E1 EXPRESSION TAG SEQADV 7S2H HIS A -3 UNP Q4E4E1 EXPRESSION TAG SEQADV 7S2H GLY A -2 UNP Q4E4E1 EXPRESSION TAG SEQADV 7S2H MET A -1 UNP Q4E4E1 EXPRESSION TAG SEQADV 7S2H ALA A 0 UNP Q4E4E1 EXPRESSION TAG SEQADV 7S2H MET B -13 UNP Q4E4E1 INITIATING METHIONINE SEQADV 7S2H GLY B -12 UNP Q4E4E1 EXPRESSION TAG SEQADV 7S2H ARG B -11 UNP Q4E4E1 EXPRESSION TAG SEQADV 7S2H GLY B -10 UNP Q4E4E1 EXPRESSION TAG SEQADV 7S2H SER B -9 UNP Q4E4E1 EXPRESSION TAG SEQADV 7S2H HIS B -8 UNP Q4E4E1 EXPRESSION TAG SEQADV 7S2H HIS B -7 UNP Q4E4E1 EXPRESSION TAG SEQADV 7S2H HIS B -6 UNP Q4E4E1 EXPRESSION TAG SEQADV 7S2H HIS B -5 UNP Q4E4E1 EXPRESSION TAG SEQADV 7S2H HIS B -4 UNP Q4E4E1 EXPRESSION TAG SEQADV 7S2H HIS B -3 UNP Q4E4E1 EXPRESSION TAG SEQADV 7S2H GLY B -2 UNP Q4E4E1 EXPRESSION TAG SEQADV 7S2H MET B -1 UNP Q4E4E1 EXPRESSION TAG SEQADV 7S2H ALA B 0 UNP Q4E4E1 EXPRESSION TAG SEQRES 1 A 381 MET GLY ARG GLY SER HIS HIS HIS HIS HIS HIS GLY MET SEQRES 2 A 381 ALA MET ASN ILE LYS GLU LEU SER LEU HIS GLU LEU CYS SEQRES 3 A 381 GLU GLU LEU LYS THR PRO ALA TRP ASN VAL PRO LEU THR SEQRES 4 A 381 PHE VAL GLY ASP VAL GLY GLY THR SER ALA ARG MET GLY SEQRES 5 A 381 PHE VAL ARG GLU GLY LYS ASN ASP SER VAL HIS ALA CYS SEQRES 6 A 381 VAL THR ARG TYR SER MET LYS ARG LYS ASP ILE THR GLU SEQRES 7 A 381 LEU ILE GLU PHE PHE ASN GLU ILE ILE GLU LEU MET PRO SEQRES 8 A 381 ALA SER VAL ILE LYS ARG VAL LYS ALA GLY VAL ILE ASN SEQRES 9 A 381 VAL PRO GLY PRO VAL THR GLY GLY ALA VAL GLY GLY PRO SEQRES 10 A 381 PHE ASN ASN LEU LYS GLY ILE ALA ARG LEU SER ASP TYR SEQRES 11 A 381 PRO LYS ALA LEU PHE PRO PRO GLY ARG SER ALA ILE LEU SEQRES 12 A 381 ASN ASP LEU GLU ALA GLY GLY PHE GLY VAL LEU ALA VAL SEQRES 13 A 381 SER ASP ALA HIS VAL PHE SER GLU TYR PHE GLY VAL MET SEQRES 14 A 381 TRP GLU GLY THR GLN TRP ARG THR CYS GLU GLN GLU PRO SEQRES 15 A 381 ALA GLY SER VAL ILE GLY ARG GLY ARG CYS LEU VAL LEU SEQRES 16 A 381 ALA PRO GLY THR GLY LEU GLY SER SER LEU ILE TYR TYR SEQRES 17 A 381 ASN PRO MET ASN GLN GLN HIS ILE VAL VAL PRO LEU GLU SEQRES 18 A 381 LEU GLY SER GLN THR ILE PRO MET ARG LYS ASP ILE ASP SEQRES 19 A 381 TYR ILE GLN THR LEU HIS ALA GLU LEU LYS LEU LEU PRO SEQRES 20 A 381 ASN TYR GLU ASN MET VAL SER GLY ALA GLY LEU GLU PHE SEQRES 21 A 381 HIS TYR ARG GLN VAL VAL ARG GLY SER ARG PRO PRO CYS SEQRES 22 A 381 SER ALA GLY GLU ILE ALA LYS LEU ALA SER GLU GLY ASP SEQRES 23 A 381 ALA ASN ALA CYS LYS ALA MET LYS LYS TYR HIS GLU TYR SEQRES 24 A 381 LEU MET ARG VAL GLY SER GLU ALA SER MET ALA LEU LEU SEQRES 25 A 381 PRO LEU THR ILE VAL LEU VAL GLY ASP ASN ILE VAL ASN SEQRES 26 A 381 ASN ALA PHE PHE TYR ARG ASN PRO GLN ASN LEU LYS GLU SEQRES 27 A 381 MET HIS ARG GLU ALA LEU ASN HIS GLU MET GLU ARG PHE SEQRES 28 A 381 GLY PHE GLN SER ARG VAL THR TYR LEU ARG GLN LYS LYS SEQRES 29 A 381 LEU LEU ASN LEU ASN LEU MET GLY CYS TYR ARG CYS GLY SEQRES 30 A 381 LEU ASP LEU SER SEQRES 1 B 381 MET GLY ARG GLY SER HIS HIS HIS HIS HIS HIS GLY MET SEQRES 2 B 381 ALA MET ASN ILE LYS GLU LEU SER LEU HIS GLU LEU CYS SEQRES 3 B 381 GLU GLU LEU LYS THR PRO ALA TRP ASN VAL PRO LEU THR SEQRES 4 B 381 PHE VAL GLY ASP VAL GLY GLY THR SER ALA ARG MET GLY SEQRES 5 B 381 PHE VAL ARG GLU GLY LYS ASN ASP SER VAL HIS ALA CYS SEQRES 6 B 381 VAL THR ARG TYR SER MET LYS ARG LYS ASP ILE THR GLU SEQRES 7 B 381 LEU ILE GLU PHE PHE ASN GLU ILE ILE GLU LEU MET PRO SEQRES 8 B 381 ALA SER VAL ILE LYS ARG VAL LYS ALA GLY VAL ILE ASN SEQRES 9 B 381 VAL PRO GLY PRO VAL THR GLY GLY ALA VAL GLY GLY PRO SEQRES 10 B 381 PHE ASN ASN LEU LYS GLY ILE ALA ARG LEU SER ASP TYR SEQRES 11 B 381 PRO LYS ALA LEU PHE PRO PRO GLY ARG SER ALA ILE LEU SEQRES 12 B 381 ASN ASP LEU GLU ALA GLY GLY PHE GLY VAL LEU ALA VAL SEQRES 13 B 381 SER ASP ALA HIS VAL PHE SER GLU TYR PHE GLY VAL MET SEQRES 14 B 381 TRP GLU GLY THR GLN TRP ARG THR CYS GLU GLN GLU PRO SEQRES 15 B 381 ALA GLY SER VAL ILE GLY ARG GLY ARG CYS LEU VAL LEU SEQRES 16 B 381 ALA PRO GLY THR GLY LEU GLY SER SER LEU ILE TYR TYR SEQRES 17 B 381 ASN PRO MET ASN GLN GLN HIS ILE VAL VAL PRO LEU GLU SEQRES 18 B 381 LEU GLY SER GLN THR ILE PRO MET ARG LYS ASP ILE ASP SEQRES 19 B 381 TYR ILE GLN THR LEU HIS ALA GLU LEU LYS LEU LEU PRO SEQRES 20 B 381 ASN TYR GLU ASN MET VAL SER GLY ALA GLY LEU GLU PHE SEQRES 21 B 381 HIS TYR ARG GLN VAL VAL ARG GLY SER ARG PRO PRO CYS SEQRES 22 B 381 SER ALA GLY GLU ILE ALA LYS LEU ALA SER GLU GLY ASP SEQRES 23 B 381 ALA ASN ALA CYS LYS ALA MET LYS LYS TYR HIS GLU TYR SEQRES 24 B 381 LEU MET ARG VAL GLY SER GLU ALA SER MET ALA LEU LEU SEQRES 25 B 381 PRO LEU THR ILE VAL LEU VAL GLY ASP ASN ILE VAL ASN SEQRES 26 B 381 ASN ALA PHE PHE TYR ARG ASN PRO GLN ASN LEU LYS GLU SEQRES 27 B 381 MET HIS ARG GLU ALA LEU ASN HIS GLU MET GLU ARG PHE SEQRES 28 B 381 GLY PHE GLN SER ARG VAL THR TYR LEU ARG GLN LYS LYS SEQRES 29 B 381 LEU LEU ASN LEU ASN LEU MET GLY CYS TYR ARG CYS GLY SEQRES 30 B 381 LEU ASP LEU SER HET FLC A 401 13 HET NA A 402 1 HET SO4 A 403 5 HET SO4 B 401 5 HETNAM FLC CITRATE ANION HETNAM NA SODIUM ION HETNAM SO4 SULFATE ION FORMUL 3 FLC C6 H5 O7 3- FORMUL 4 NA NA 1+ FORMUL 5 SO4 2(O4 S 2-) FORMUL 7 HOH *548(H2 O) HELIX 1 AA1 SER A 7 LYS A 16 1 10 HELIX 2 AA2 THR A 17 ASN A 21 5 5 HELIX 3 AA3 LYS A 44 ASP A 46 5 3 HELIX 4 AA4 THR A 63 MET A 76 1 14 HELIX 5 AA5 PRO A 77 LYS A 82 1 6 HELIX 6 AA6 SER A 114 TYR A 116 5 3 HELIX 7 AA7 ASP A 131 ALA A 145 1 15 HELIX 8 AA8 VAL A 147 TYR A 151 1 5 HELIX 9 AA9 GLN A 160 GLU A 165 1 6 HELIX 10 AB1 GLU A 207 GLN A 211 5 5 HELIX 11 AB2 ASP A 218 LYS A 230 1 13 HELIX 12 AB3 ASN A 234 VAL A 239 1 6 HELIX 13 AB4 SER A 240 ARG A 253 1 14 HELIX 14 AB5 SER A 260 GLU A 270 1 11 HELIX 15 AB6 ASP A 272 LEU A 298 1 27 HELIX 16 AB7 GLY A 306 ASN A 312 1 7 HELIX 17 AB8 ASN A 312 ASN A 318 1 7 HELIX 18 AB9 ASN A 318 LEU A 330 1 13 HELIX 19 AC1 HIS A 332 GLY A 338 5 7 HELIX 20 AC2 PHE A 339 VAL A 343 5 5 HELIX 21 AC3 ASN A 353 ASP A 365 1 13 HELIX 22 AC4 SER B 7 LYS B 16 1 10 HELIX 23 AC5 THR B 17 ASN B 21 5 5 HELIX 24 AC6 LYS B 44 ASP B 46 5 3 HELIX 25 AC7 THR B 63 MET B 76 1 14 HELIX 26 AC8 PRO B 77 LYS B 82 1 6 HELIX 27 AC9 SER B 114 TYR B 116 5 3 HELIX 28 AD1 ASP B 131 ALA B 145 1 15 HELIX 29 AD2 VAL B 147 TYR B 151 1 5 HELIX 30 AD3 GLN B 160 CYS B 164 5 5 HELIX 31 AD4 GLU B 207 GLN B 211 5 5 HELIX 32 AD5 ASP B 218 LYS B 230 1 13 HELIX 33 AD6 ASN B 234 VAL B 239 1 6 HELIX 34 AD7 SER B 240 ARG B 253 1 14 HELIX 35 AD8 SER B 260 GLU B 270 1 11 HELIX 36 AD9 ASP B 272 LEU B 298 1 27 HELIX 37 AE1 GLY B 306 ASN B 312 1 7 HELIX 38 AE2 ASN B 312 ASN B 318 1 7 HELIX 39 AE3 ASN B 318 LEU B 330 1 13 HELIX 40 AE4 HIS B 332 GLY B 338 5 7 HELIX 41 AE5 PHE B 339 VAL B 343 5 5 HELIX 42 AE6 ASN B 353 LEU B 366 1 14 SHEET 1 AA1 6 MET A 1 GLU A 5 0 SHEET 2 AA1 6 VAL A 48 SER A 56 1 O VAL A 52 N LYS A 4 SHEET 3 AA1 6 SER A 34 GLU A 42 -1 N ALA A 35 O TYR A 55 SHEET 4 AA1 6 LEU A 24 VAL A 30 -1 N VAL A 27 O GLY A 38 SHEET 5 AA1 6 VAL A 84 VAL A 91 1 O LYS A 85 N LEU A 24 SHEET 6 AA1 6 SER A 126 ASN A 130 1 O LEU A 129 N ILE A 89 SHEET 1 AA2 3 VAL A 95 THR A 96 0 SHEET 2 AA2 3 VAL A 100 GLY A 101 -1 O VAL A 100 N THR A 96 SHEET 3 AA2 3 ALA A 111 ARG A 112 -1 O ALA A 111 N GLY A 101 SHEET 1 AA3 6 PHE A 152 TRP A 156 0 SHEET 2 AA3 6 THR A 344 GLN A 348 -1 O ARG A 347 N GLY A 153 SHEET 3 AA3 6 THR A 301 LEU A 304 1 N ILE A 302 O LEU A 346 SHEET 4 AA3 6 CYS A 178 PRO A 183 1 N LEU A 181 O VAL A 303 SHEET 5 AA3 6 LEU A 187 ASN A 195 -1 O SER A 190 N VAL A 180 SHEET 6 AA3 6 GLN A 200 LEU A 206 -1 O GLN A 200 N ASN A 195 SHEET 1 AA4 6 MET B 1 GLU B 5 0 SHEET 2 AA4 6 VAL B 48 SER B 56 1 O ALA B 50 N ASN B 2 SHEET 3 AA4 6 SER B 34 GLU B 42 -1 N ALA B 35 O TYR B 55 SHEET 4 AA4 6 LEU B 24 VAL B 30 -1 N ASP B 29 O ARG B 36 SHEET 5 AA4 6 VAL B 84 VAL B 91 1 O LYS B 85 N LEU B 24 SHEET 6 AA4 6 SER B 126 ASN B 130 1 O LEU B 129 N ILE B 89 SHEET 1 AA5 3 VAL B 95 THR B 96 0 SHEET 2 AA5 3 VAL B 100 GLY B 101 -1 O VAL B 100 N THR B 96 SHEET 3 AA5 3 ALA B 111 ARG B 112 -1 O ALA B 111 N GLY B 101 SHEET 1 AA6 6 PHE B 152 TRP B 156 0 SHEET 2 AA6 6 THR B 344 GLN B 348 -1 O ARG B 347 N GLY B 153 SHEET 3 AA6 6 THR B 301 LEU B 304 1 N ILE B 302 O LEU B 346 SHEET 4 AA6 6 CYS B 178 PRO B 183 1 N LEU B 181 O VAL B 303 SHEET 5 AA6 6 LEU B 187 TYR B 194 -1 O ILE B 192 N CYS B 178 SHEET 6 AA6 6 HIS B 201 LEU B 206 -1 O VAL B 204 N LEU B 191 LINK OG1 THR A 53 NA NA A 402 1555 1555 2.29 LINK O ARG A 54 NA NA A 402 1555 1555 2.44 LINK OA1 FLC A 401 NA NA A 402 1555 1555 2.35 LINK OB1 FLC A 401 NA NA A 402 1555 1555 2.53 LINK OHB FLC A 401 NA NA A 402 1555 1555 2.41 LINK NA NA A 402 O HOH A 721 1555 1555 2.10 CISPEP 1 GLY A 102 PRO A 103 0 -0.85 CISPEP 2 GLY B 102 PRO B 103 0 2.94 CRYST1 67.304 78.920 76.847 90.00 101.30 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014858 0.000000 0.002970 0.00000 SCALE2 0.000000 0.012671 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013270 0.00000