HEADER TRANSFERASE 08-SEP-21 7S46 TITLE PAK4CAT (D440N/S474E) IN COMPLEX WITH INTEGRIN BETA5 760-770 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOFORM 2 OF SERINE/THREONINE-PROTEIN KINASE PAK 4; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: P21-ACTIVATED KINASE 4,PAK-4; COMPND 5 EC: 2.7.11.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: PAK4 CATALYTIC DOMAIN (109-426) WITH D440N, S474E COMPND 9 MUTATION; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: INTEGRIN BETA-5; COMPND 12 CHAIN: B; COMPND 13 ENGINEERED: YES; COMPND 14 OTHER_DETAILS: SYNTHETIC PEPTIDE OF INTEGRIN BETA 5 CYTOSOLIC DOMAIN COMPND 15 (760-GLU-ARG-SER-ARG-ALA-ARG-TYR-GLU-MET-ALA-SER-770) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PAK4, KIAA1142; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS SERINE/THREONINE KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR B.H.HA,T.J.BOGGON REVDAT 3 25-OCT-23 7S46 1 REMARK REVDAT 2 23-NOV-22 7S46 1 JRNL REVDAT 1 09-NOV-22 7S46 0 JRNL AUTH B.H.HA,S.YIGIT,N.NATARAJAN,E.M.MORSE,D.A.CALDERWOOD, JRNL AUTH 2 T.J.BOGGON JRNL TITL MOLECULAR BASIS FOR INTEGRIN ADHESION RECEPTOR BINDING TO JRNL TITL 2 P21-ACTIVATED KINASE 4 (PAK4) JRNL REF COMMUN BIOL V. 5 1257 2022 JRNL REFN ESSN 2399-3642 JRNL DOI 10.1038/S42003-022-04157-3 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0151 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 20098 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1033 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1438 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3070 REMARK 3 BIN FREE R VALUE SET COUNT : 79 REMARK 3 BIN FREE R VALUE : 0.3770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2367 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 67 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.87000 REMARK 3 B22 (A**2) : -0.87000 REMARK 3 B33 (A**2) : 1.75000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.187 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.164 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.148 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.257 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2426 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2405 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3282 ; 1.832 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5526 ; 1.028 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 297 ; 6.110 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 106 ;35.262 ;23.208 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 438 ;13.549 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;17.373 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 368 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2691 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 541 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 12 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 300 A 306 REMARK 3 RESIDUE RANGE : A 307 A 345 REMARK 3 RESIDUE RANGE : A 346 A 360 REMARK 3 RESIDUE RANGE : A 361 A 374 REMARK 3 RESIDUE RANGE : A 375 A 381 REMARK 3 RESIDUE RANGE : A 382 A 410 REMARK 3 RESIDUE RANGE : A 411 A 433 REMARK 3 RESIDUE RANGE : A 434 A 472 REMARK 3 RESIDUE RANGE : A 473 A 525 REMARK 3 RESIDUE RANGE : A 526 A 538 REMARK 3 RESIDUE RANGE : A 539 A 567 REMARK 3 RESIDUE RANGE : A 568 A 589 REMARK 3 ORIGIN FOR THE GROUP (A): -21.0674 11.4897 -6.7828 REMARK 3 T TENSOR REMARK 3 T11: 0.0507 T22: 0.0364 REMARK 3 T33: 0.0505 T12: -0.0385 REMARK 3 T13: 0.0453 T23: -0.0315 REMARK 3 L TENSOR REMARK 3 L11: 1.5527 L22: 0.9258 REMARK 3 L33: 1.6281 L12: 0.2107 REMARK 3 L13: -0.2220 L23: -0.6652 REMARK 3 S TENSOR REMARK 3 S11: 0.1338 S12: -0.1588 S13: 0.0296 REMARK 3 S21: 0.0727 S22: -0.1045 S23: 0.0536 REMARK 3 S31: 0.0031 S32: 0.0843 S33: -0.0293 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 7S46 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-SEP-21. REMARK 100 THE DEPOSITION ID IS D_1000259514. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21249 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.40 REMARK 200 R MERGE (I) : 0.13200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.30 REMARK 200 R MERGE FOR SHELL (I) : 1.34300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4FIF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL (PH 8.5) AND 0.5 M TRI REMARK 280 -SODIUM CITRATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 89.41450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 30.91050 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 30.91050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 44.70725 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 30.91050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 30.91050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 134.12175 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 30.91050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 30.91050 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 44.70725 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 30.91050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 30.91050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 134.12175 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 89.41450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 246 REMARK 465 GLY A 247 REMARK 465 SER A 248 REMARK 465 SER A 249 REMARK 465 HIS A 250 REMARK 465 HIS A 251 REMARK 465 HIS A 252 REMARK 465 HIS A 253 REMARK 465 HIS A 254 REMARK 465 HIS A 255 REMARK 465 SER A 256 REMARK 465 SER A 257 REMARK 465 GLY A 258 REMARK 465 LEU A 259 REMARK 465 VAL A 260 REMARK 465 PRO A 261 REMARK 465 ARG A 262 REMARK 465 GLY A 263 REMARK 465 SER A 264 REMARK 465 HIS A 265 REMARK 465 MET A 266 REMARK 465 GLU A 267 REMARK 465 ASN A 268 REMARK 465 LEU A 269 REMARK 465 TYR A 270 REMARK 465 PHE A 271 REMARK 465 GLN A 272 REMARK 465 GLY A 273 REMARK 465 ALA A 274 REMARK 465 ARG A 275 REMARK 465 ALA A 276 REMARK 465 ARG A 277 REMARK 465 GLN A 278 REMARK 465 GLU A 279 REMARK 465 ASN A 280 REMARK 465 GLY A 281 REMARK 465 MET A 282 REMARK 465 PRO A 283 REMARK 465 GLU A 284 REMARK 465 LYS A 285 REMARK 465 PRO A 286 REMARK 465 PRO A 287 REMARK 465 GLY A 288 REMARK 465 PRO A 289 REMARK 465 ARG A 290 REMARK 465 SER A 291 REMARK 465 PRO A 292 REMARK 465 GLN A 293 REMARK 465 ARG A 294 REMARK 465 GLU A 295 REMARK 465 PRO A 296 REMARK 465 GLN A 297 REMARK 465 ARG A 298 REMARK 465 VAL A 299 REMARK 465 THR A 590 REMARK 465 ARG A 591 REMARK 465 GLU B 760 REMARK 465 ARG B 761 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 305 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 305 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG A 411 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 551 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 555 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 589 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 440 39.46 -143.66 REMARK 500 ASP A 458 76.68 54.75 REMARK 500 SER A 466 -178.56 -171.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 ANP A 600 DBREF 7S46 A 274 591 UNP O96013 PAK4_HUMAN 109 426 DBREF 7S46 B 760 770 UNP P18084 ITB5_HUMAN 760 770 SEQADV 7S46 MET A 246 UNP O96013 INITIATING METHIONINE SEQADV 7S46 GLY A 247 UNP O96013 EXPRESSION TAG SEQADV 7S46 SER A 248 UNP O96013 EXPRESSION TAG SEQADV 7S46 SER A 249 UNP O96013 EXPRESSION TAG SEQADV 7S46 HIS A 250 UNP O96013 EXPRESSION TAG SEQADV 7S46 HIS A 251 UNP O96013 EXPRESSION TAG SEQADV 7S46 HIS A 252 UNP O96013 EXPRESSION TAG SEQADV 7S46 HIS A 253 UNP O96013 EXPRESSION TAG SEQADV 7S46 HIS A 254 UNP O96013 EXPRESSION TAG SEQADV 7S46 HIS A 255 UNP O96013 EXPRESSION TAG SEQADV 7S46 SER A 256 UNP O96013 EXPRESSION TAG SEQADV 7S46 SER A 257 UNP O96013 EXPRESSION TAG SEQADV 7S46 GLY A 258 UNP O96013 EXPRESSION TAG SEQADV 7S46 LEU A 259 UNP O96013 EXPRESSION TAG SEQADV 7S46 VAL A 260 UNP O96013 EXPRESSION TAG SEQADV 7S46 PRO A 261 UNP O96013 EXPRESSION TAG SEQADV 7S46 ARG A 262 UNP O96013 EXPRESSION TAG SEQADV 7S46 GLY A 263 UNP O96013 EXPRESSION TAG SEQADV 7S46 SER A 264 UNP O96013 EXPRESSION TAG SEQADV 7S46 HIS A 265 UNP O96013 EXPRESSION TAG SEQADV 7S46 MET A 266 UNP O96013 EXPRESSION TAG SEQADV 7S46 GLU A 267 UNP O96013 EXPRESSION TAG SEQADV 7S46 ASN A 268 UNP O96013 EXPRESSION TAG SEQADV 7S46 LEU A 269 UNP O96013 EXPRESSION TAG SEQADV 7S46 TYR A 270 UNP O96013 EXPRESSION TAG SEQADV 7S46 PHE A 271 UNP O96013 EXPRESSION TAG SEQADV 7S46 GLN A 272 UNP O96013 EXPRESSION TAG SEQADV 7S46 GLY A 273 UNP O96013 EXPRESSION TAG SEQADV 7S46 ASN A 440 UNP O96013 ASP 275 ENGINEERED MUTATION SEQADV 7S46 GLU A 474 UNP O96013 SER 309 ENGINEERED MUTATION SEQRES 1 A 346 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 346 LEU VAL PRO ARG GLY SER HIS MET GLU ASN LEU TYR PHE SEQRES 3 A 346 GLN GLY ALA ARG ALA ARG GLN GLU ASN GLY MET PRO GLU SEQRES 4 A 346 LYS PRO PRO GLY PRO ARG SER PRO GLN ARG GLU PRO GLN SEQRES 5 A 346 ARG VAL SER HIS GLU GLN PHE ARG ALA ALA LEU GLN LEU SEQRES 6 A 346 VAL VAL ASP PRO GLY ASP PRO ARG SER TYR LEU ASP ASN SEQRES 7 A 346 PHE ILE LYS ILE GLY GLU GLY SER THR GLY ILE VAL CYS SEQRES 8 A 346 ILE ALA THR VAL ARG SER SER GLY LYS LEU VAL ALA VAL SEQRES 9 A 346 LYS LYS MET ASP LEU ARG LYS GLN GLN ARG ARG GLU LEU SEQRES 10 A 346 LEU PHE ASN GLU VAL VAL ILE MET ARG ASP TYR GLN HIS SEQRES 11 A 346 GLU ASN VAL VAL GLU MET TYR ASN SER TYR LEU VAL GLY SEQRES 12 A 346 ASP GLU LEU TRP VAL VAL MET GLU PHE LEU GLU GLY GLY SEQRES 13 A 346 ALA LEU THR ASP ILE VAL THR HIS THR ARG MET ASN GLU SEQRES 14 A 346 GLU GLN ILE ALA ALA VAL CYS LEU ALA VAL LEU GLN ALA SEQRES 15 A 346 LEU SER VAL LEU HIS ALA GLN GLY VAL ILE HIS ARG ASN SEQRES 16 A 346 ILE LYS SER ASP SER ILE LEU LEU THR HIS ASP GLY ARG SEQRES 17 A 346 VAL LYS LEU SER ASP PHE GLY PHE CYS ALA GLN VAL SER SEQRES 18 A 346 LYS GLU VAL PRO ARG ARG LYS GLU LEU VAL GLY THR PRO SEQRES 19 A 346 TYR TRP MET ALA PRO GLU LEU ILE SER ARG LEU PRO TYR SEQRES 20 A 346 GLY PRO GLU VAL ASP ILE TRP SER LEU GLY ILE MET VAL SEQRES 21 A 346 ILE GLU MET VAL ASP GLY GLU PRO PRO TYR PHE ASN GLU SEQRES 22 A 346 PRO PRO LEU LYS ALA MET LYS MET ILE ARG ASP ASN LEU SEQRES 23 A 346 PRO PRO ARG LEU LYS ASN LEU HIS LYS VAL SER PRO SER SEQRES 24 A 346 LEU LYS GLY PHE LEU ASP ARG LEU LEU VAL ARG ASP PRO SEQRES 25 A 346 ALA GLN ARG ALA THR ALA ALA GLU LEU LEU LYS HIS PRO SEQRES 26 A 346 PHE LEU ALA LYS ALA GLY PRO PRO ALA SER ILE VAL PRO SEQRES 27 A 346 LEU MET ARG GLN ASN ARG THR ARG SEQRES 1 B 11 GLU ARG SER ARG ALA ARG TYR GLU MET ALA SER HET ANP A 600 10 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER FORMUL 3 ANP C10 H17 N6 O12 P3 FORMUL 4 HOH *67(H2 O) HELIX 1 AA1 SER A 300 VAL A 312 1 13 HELIX 2 AA2 ASP A 316 SER A 319 5 4 HELIX 3 AA3 ARG A 355 GLN A 357 5 3 HELIX 4 AA4 ARG A 359 GLU A 361 5 3 HELIX 5 AA5 LEU A 362 TYR A 373 1 12 HELIX 6 AA6 ALA A 402 THR A 410 1 9 HELIX 7 AA7 ASN A 413 GLN A 434 1 22 HELIX 8 AA8 LYS A 442 ASP A 444 5 3 HELIX 9 AA9 THR A 478 MET A 482 5 5 HELIX 10 AB1 ALA A 483 SER A 488 1 6 HELIX 11 AB2 PRO A 494 GLY A 511 1 18 HELIX 12 AB3 PRO A 519 ASN A 530 1 12 HELIX 13 AB4 ASN A 537 VAL A 541 5 5 HELIX 14 AB5 SER A 542 LEU A 553 1 12 HELIX 15 AB6 ASP A 556 ARG A 560 5 5 HELIX 16 AB7 THR A 562 LEU A 567 1 6 HELIX 17 AB8 LYS A 568 ALA A 575 5 8 HELIX 18 AB9 PRO A 577 ARG A 589 5 13 SHEET 1 AA1 5 LEU A 321 GLU A 329 0 SHEET 2 AA1 5 ILE A 334 VAL A 340 -1 O VAL A 335 N ILE A 327 SHEET 3 AA1 5 LEU A 346 ASP A 353 -1 O LYS A 351 N ILE A 334 SHEET 4 AA1 5 GLU A 390 MET A 395 -1 O MET A 395 N ALA A 348 SHEET 5 AA1 5 MET A 381 VAL A 387 -1 N VAL A 387 O GLU A 390 SHEET 1 AA2 2 VAL A 436 ILE A 437 0 SHEET 2 AA2 2 ALA A 463 GLN A 464 -1 O ALA A 463 N ILE A 437 SHEET 1 AA3 2 ILE A 446 LEU A 448 0 SHEET 2 AA3 2 VAL A 454 LEU A 456 -1 O LYS A 455 N LEU A 447 CRYST1 61.821 61.821 178.829 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016176 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016176 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005592 0.00000