HEADER TRANSFERASE 08-SEP-21 7S47 TITLE INTEGRIN BETA5(743-774)-LINKER-PAK4CAT(D440N/S474E) COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTEGRIN BETA-5, ISOFORM 2 OF SERINE/THREONINE-PROTEIN COMPND 3 KINASE PAK 4 CHIMERA; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: P21-ACTIVATED KINASE 4,PAK-4; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 OTHER_DETAILS: CHIMERIC PROTEIN OF INTEGRIN BETA 5 (743-744-SSGSSGSS COMPND 10 GSSG-PAK4 KINASE (109-426); COMPND 11 MOL_ID: 2; COMPND 12 MOLECULE: INTEGRIN BETA-5; COMPND 13 CHAIN: B; COMPND 14 ENGINEERED: YES; COMPND 15 OTHER_DETAILS: INTEGRIN BETA 5 CYTOSOLIC DOMAIN ( 743- COMPND 16 KLLVTIHDRREFAKFQSERSRARYEMASNPLY-774 ) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ITGB5, PAK4, KIAA1142; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: ITGB5; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SERINE/THREONINE KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR B.H.HA,T.J.BOGGON REVDAT 3 25-OCT-23 7S47 1 REMARK REVDAT 2 23-NOV-22 7S47 1 JRNL REVDAT 1 09-NOV-22 7S47 0 JRNL AUTH B.H.HA,S.YIGIT,N.NATARAJAN,E.M.MORSE,D.A.CALDERWOOD, JRNL AUTH 2 T.J.BOGGON JRNL TITL MOLECULAR BASIS FOR INTEGRIN ADHESION RECEPTOR BINDING TO JRNL TITL 2 P21-ACTIVATED KINASE 4 (PAK4) JRNL REF COMMUN BIOL V. 5 1257 2022 JRNL REFN ESSN 2399-3642 JRNL DOI 10.1038/S42003-022-04157-3 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0151 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 23367 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1258 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1656 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE SET COUNT : 90 REMARK 3 BIN FREE R VALUE : 0.3330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2350 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 103 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.169 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.157 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.119 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.125 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2415 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2402 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3269 ; 1.682 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5519 ; 1.014 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 296 ; 6.330 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 106 ;33.952 ;23.208 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 438 ;13.372 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;17.535 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 367 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2677 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 539 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 14 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 300 A 314 REMARK 3 RESIDUE RANGE : A 315 A 328 REMARK 3 RESIDUE RANGE : A 329 A 352 REMARK 3 RESIDUE RANGE : A 353 A 361 REMARK 3 RESIDUE RANGE : A 362 A 375 REMARK 3 RESIDUE RANGE : A 376 A 381 REMARK 3 RESIDUE RANGE : A 382 A 401 REMARK 3 RESIDUE RANGE : A 402 A 411 REMARK 3 RESIDUE RANGE : A 412 A 462 REMARK 3 RESIDUE RANGE : A 463 A 475 REMARK 3 RESIDUE RANGE : A 476 A 511 REMARK 3 RESIDUE RANGE : A 512 A 534 REMARK 3 RESIDUE RANGE : A 535 A 573 REMARK 3 RESIDUE RANGE : A 574 A 589 REMARK 3 ORIGIN FOR THE GROUP (A): -21.2485 11.7722 -6.6913 REMARK 3 T TENSOR REMARK 3 T11: 0.0675 T22: 0.0761 REMARK 3 T33: 0.0402 T12: -0.0587 REMARK 3 T13: 0.0497 T23: -0.0348 REMARK 3 L TENSOR REMARK 3 L11: 1.0122 L22: 0.5416 REMARK 3 L33: 1.6905 L12: 0.0128 REMARK 3 L13: -0.3979 L23: -0.5023 REMARK 3 S TENSOR REMARK 3 S11: 0.0214 S12: -0.1332 S13: -0.0321 REMARK 3 S21: -0.0253 S22: -0.0587 S23: -0.0410 REMARK 3 S31: 0.0312 S32: 0.0965 S33: 0.0373 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 763 B 768 REMARK 3 ORIGIN FOR THE GROUP (A): -26.2320 23.0645 -2.3291 REMARK 3 T TENSOR REMARK 3 T11: 0.1979 T22: 0.1743 REMARK 3 T33: 0.2465 T12: 0.0253 REMARK 3 T13: 0.1523 T23: 0.0435 REMARK 3 L TENSOR REMARK 3 L11: 5.0812 L22: 11.2880 REMARK 3 L33: 12.8220 L12: 7.2847 REMARK 3 L13: -5.7270 L23: -6.0055 REMARK 3 S TENSOR REMARK 3 S11: 0.6347 S12: 0.2156 S13: 0.6198 REMARK 3 S21: 0.7662 S22: 0.3109 S23: 0.7178 REMARK 3 S31: -0.8293 S32: -0.1449 S33: -0.9456 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 7S47 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-SEP-21. REMARK 100 THE DEPOSITION ID IS D_1000259149. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24672 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : 0.16600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.90 REMARK 200 R MERGE FOR SHELL (I) : 1.80000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4FIF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM ACETATE PH 4.0, 0.7 M REMARK 280 DIAMMONIUM PHOSPHATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 89.30450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 31.16050 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 31.16050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 44.65225 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 31.16050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 31.16050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 133.95675 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 31.16050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 31.16050 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 44.65225 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 31.16050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 31.16050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 133.95675 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 89.30450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 209 REMARK 465 GLY A 210 REMARK 465 SER A 211 REMARK 465 SER A 212 REMARK 465 HIS A 213 REMARK 465 HIS A 214 REMARK 465 HIS A 215 REMARK 465 HIS A 216 REMARK 465 HIS A 217 REMARK 465 HIS A 218 REMARK 465 SER A 219 REMARK 465 SER A 220 REMARK 465 GLY A 221 REMARK 465 LEU A 222 REMARK 465 VAL A 223 REMARK 465 PRO A 224 REMARK 465 ARG A 225 REMARK 465 GLY A 226 REMARK 465 SER A 227 REMARK 465 HIS A 228 REMARK 465 MET A 229 REMARK 465 LYS A 230 REMARK 465 LEU A 231 REMARK 465 LEU A 232 REMARK 465 VAL A 233 REMARK 465 THR A 234 REMARK 465 ILE A 235 REMARK 465 HIS A 236 REMARK 465 ASP A 237 REMARK 465 ARG A 238 REMARK 465 ARG A 239 REMARK 465 GLU A 240 REMARK 465 PHE A 241 REMARK 465 ALA A 242 REMARK 465 LYS A 243 REMARK 465 PHE A 244 REMARK 465 GLN A 245 REMARK 465 SER A 246 REMARK 465 GLU A 247 REMARK 465 ARG A 248 REMARK 465 SER A 249 REMARK 465 ARG A 250 REMARK 465 ALA A 251 REMARK 465 ARG A 252 REMARK 465 TYR A 253 REMARK 465 GLU A 254 REMARK 465 MET A 255 REMARK 465 ALA A 256 REMARK 465 SER A 257 REMARK 465 ASN A 258 REMARK 465 PRO A 259 REMARK 465 LEU A 260 REMARK 465 TYR A 261 REMARK 465 SER A 262 REMARK 465 SER A 263 REMARK 465 GLY A 264 REMARK 465 SER A 265 REMARK 465 SER A 266 REMARK 465 GLY A 267 REMARK 465 SER A 268 REMARK 465 SER A 269 REMARK 465 GLY A 270 REMARK 465 SER A 271 REMARK 465 SER A 272 REMARK 465 GLY A 273 REMARK 465 ALA A 274 REMARK 465 ARG A 275 REMARK 465 ALA A 276 REMARK 465 ARG A 277 REMARK 465 GLN A 278 REMARK 465 GLU A 279 REMARK 465 ASN A 280 REMARK 465 GLY A 281 REMARK 465 MET A 282 REMARK 465 PRO A 283 REMARK 465 GLU A 284 REMARK 465 LYS A 285 REMARK 465 PRO A 286 REMARK 465 PRO A 287 REMARK 465 GLY A 288 REMARK 465 PRO A 289 REMARK 465 ARG A 290 REMARK 465 SER A 291 REMARK 465 PRO A 292 REMARK 465 GLN A 293 REMARK 465 ARG A 294 REMARK 465 GLU A 295 REMARK 465 PRO A 296 REMARK 465 GLN A 297 REMARK 465 ARG A 298 REMARK 465 VAL A 299 REMARK 465 THR A 590 REMARK 465 ARG A 591 REMARK 465 LYS B 743 REMARK 465 LEU B 744 REMARK 465 LEU B 745 REMARK 465 VAL B 746 REMARK 465 THR B 747 REMARK 465 ILE B 748 REMARK 465 HIS B 749 REMARK 465 ASP B 750 REMARK 465 ARG B 751 REMARK 465 ARG B 752 REMARK 465 GLU B 753 REMARK 465 PHE B 754 REMARK 465 ALA B 755 REMARK 465 LYS B 756 REMARK 465 PHE B 757 REMARK 465 GLN B 758 REMARK 465 SER B 759 REMARK 465 GLU B 760 REMARK 465 ARG B 761 REMARK 465 SER B 762 REMARK 465 ALA B 769 REMARK 465 SER B 770 REMARK 465 ASN B 771 REMARK 465 PRO B 772 REMARK 465 LEU B 773 REMARK 465 TYR B 774 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 305 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ASP A 322 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 440 37.92 -143.78 REMARK 500 ASP A 458 73.91 54.51 REMARK 500 LEU A 553 59.53 -90.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 ANP A 600 DBREF 7S47 A 230 261 UNP P18084 ITB5_HUMAN 743 774 DBREF 7S47 A 262 273 PDB 7S47 7S47 262 273 DBREF 7S47 A 274 591 UNP O96013-2 PAK4-2_HUMAN 109 426 DBREF 7S47 B 743 774 UNP P18084 ITB5_HUMAN 743 774 SEQADV 7S47 MET A 209 UNP P18084 INITIATING METHIONINE SEQADV 7S47 GLY A 210 UNP P18084 EXPRESSION TAG SEQADV 7S47 SER A 211 UNP P18084 EXPRESSION TAG SEQADV 7S47 SER A 212 UNP P18084 EXPRESSION TAG SEQADV 7S47 HIS A 213 UNP P18084 EXPRESSION TAG SEQADV 7S47 HIS A 214 UNP P18084 EXPRESSION TAG SEQADV 7S47 HIS A 215 UNP P18084 EXPRESSION TAG SEQADV 7S47 HIS A 216 UNP P18084 EXPRESSION TAG SEQADV 7S47 HIS A 217 UNP P18084 EXPRESSION TAG SEQADV 7S47 HIS A 218 UNP P18084 EXPRESSION TAG SEQADV 7S47 SER A 219 UNP P18084 EXPRESSION TAG SEQADV 7S47 SER A 220 UNP P18084 EXPRESSION TAG SEQADV 7S47 GLY A 221 UNP P18084 EXPRESSION TAG SEQADV 7S47 LEU A 222 UNP P18084 EXPRESSION TAG SEQADV 7S47 VAL A 223 UNP P18084 EXPRESSION TAG SEQADV 7S47 PRO A 224 UNP P18084 EXPRESSION TAG SEQADV 7S47 ARG A 225 UNP P18084 EXPRESSION TAG SEQADV 7S47 GLY A 226 UNP P18084 EXPRESSION TAG SEQADV 7S47 SER A 227 UNP P18084 EXPRESSION TAG SEQADV 7S47 HIS A 228 UNP P18084 EXPRESSION TAG SEQADV 7S47 MET A 229 UNP P18084 EXPRESSION TAG SEQADV 7S47 ASN A 440 UNP O96013-2 ASP 275 ENGINEERED MUTATION SEQADV 7S47 GLU A 474 UNP O96013-2 SER 309 ENGINEERED MUTATION SEQRES 1 A 383 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 383 LEU VAL PRO ARG GLY SER HIS MET LYS LEU LEU VAL THR SEQRES 3 A 383 ILE HIS ASP ARG ARG GLU PHE ALA LYS PHE GLN SER GLU SEQRES 4 A 383 ARG SER ARG ALA ARG TYR GLU MET ALA SER ASN PRO LEU SEQRES 5 A 383 TYR SER SER GLY SER SER GLY SER SER GLY SER SER GLY SEQRES 6 A 383 ALA ARG ALA ARG GLN GLU ASN GLY MET PRO GLU LYS PRO SEQRES 7 A 383 PRO GLY PRO ARG SER PRO GLN ARG GLU PRO GLN ARG VAL SEQRES 8 A 383 SER HIS GLU GLN PHE ARG ALA ALA LEU GLN LEU VAL VAL SEQRES 9 A 383 ASP PRO GLY ASP PRO ARG SER TYR LEU ASP ASN PHE ILE SEQRES 10 A 383 LYS ILE GLY GLU GLY SER THR GLY ILE VAL CYS ILE ALA SEQRES 11 A 383 THR VAL ARG SER SER GLY LYS LEU VAL ALA VAL LYS LYS SEQRES 12 A 383 MET ASP LEU ARG LYS GLN GLN ARG ARG GLU LEU LEU PHE SEQRES 13 A 383 ASN GLU VAL VAL ILE MET ARG ASP TYR GLN HIS GLU ASN SEQRES 14 A 383 VAL VAL GLU MET TYR ASN SER TYR LEU VAL GLY ASP GLU SEQRES 15 A 383 LEU TRP VAL VAL MET GLU PHE LEU GLU GLY GLY ALA LEU SEQRES 16 A 383 THR ASP ILE VAL THR HIS THR ARG MET ASN GLU GLU GLN SEQRES 17 A 383 ILE ALA ALA VAL CYS LEU ALA VAL LEU GLN ALA LEU SER SEQRES 18 A 383 VAL LEU HIS ALA GLN GLY VAL ILE HIS ARG ASN ILE LYS SEQRES 19 A 383 SER ASP SER ILE LEU LEU THR HIS ASP GLY ARG VAL LYS SEQRES 20 A 383 LEU SER ASP PHE GLY PHE CYS ALA GLN VAL SER LYS GLU SEQRES 21 A 383 VAL PRO ARG ARG LYS GLU LEU VAL GLY THR PRO TYR TRP SEQRES 22 A 383 MET ALA PRO GLU LEU ILE SER ARG LEU PRO TYR GLY PRO SEQRES 23 A 383 GLU VAL ASP ILE TRP SER LEU GLY ILE MET VAL ILE GLU SEQRES 24 A 383 MET VAL ASP GLY GLU PRO PRO TYR PHE ASN GLU PRO PRO SEQRES 25 A 383 LEU LYS ALA MET LYS MET ILE ARG ASP ASN LEU PRO PRO SEQRES 26 A 383 ARG LEU LYS ASN LEU HIS LYS VAL SER PRO SER LEU LYS SEQRES 27 A 383 GLY PHE LEU ASP ARG LEU LEU VAL ARG ASP PRO ALA GLN SEQRES 28 A 383 ARG ALA THR ALA ALA GLU LEU LEU LYS HIS PRO PHE LEU SEQRES 29 A 383 ALA LYS ALA GLY PRO PRO ALA SER ILE VAL PRO LEU MET SEQRES 30 A 383 ARG GLN ASN ARG THR ARG SEQRES 1 B 32 LYS LEU LEU VAL THR ILE HIS ASP ARG ARG GLU PHE ALA SEQRES 2 B 32 LYS PHE GLN SER GLU ARG SER ARG ALA ARG TYR GLU MET SEQRES 3 B 32 ALA SER ASN PRO LEU TYR HET ANP A 600 10 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER FORMUL 3 ANP C10 H17 N6 O12 P3 FORMUL 4 HOH *103(H2 O) HELIX 1 AA1 SER A 300 VAL A 312 1 13 HELIX 2 AA2 ASP A 316 SER A 319 5 4 HELIX 3 AA3 ARG A 355 GLN A 357 5 3 HELIX 4 AA4 ARG A 359 GLU A 361 5 3 HELIX 5 AA5 LEU A 362 TYR A 373 1 12 HELIX 6 AA6 LEU A 403 THR A 410 1 8 HELIX 7 AA7 ASN A 413 GLN A 434 1 22 HELIX 8 AA8 LYS A 442 ASP A 444 5 3 HELIX 9 AA9 THR A 478 MET A 482 5 5 HELIX 10 AB1 ALA A 483 SER A 488 1 6 HELIX 11 AB2 PRO A 494 GLY A 511 1 18 HELIX 12 AB3 PRO A 519 ASN A 530 1 12 HELIX 13 AB4 ASN A 537 VAL A 541 5 5 HELIX 14 AB5 SER A 542 LEU A 553 1 12 HELIX 15 AB6 THR A 562 LEU A 567 1 6 HELIX 16 AB7 LYS A 568 ALA A 575 5 8 HELIX 17 AB8 PRO A 577 VAL A 582 1 6 HELIX 18 AB9 PRO A 583 MET A 585 5 3 SHEET 1 AA1 5 LEU A 321 GLU A 329 0 SHEET 2 AA1 5 ILE A 334 VAL A 340 -1 O VAL A 335 N ILE A 327 SHEET 3 AA1 5 LEU A 346 ASP A 353 -1 O VAL A 349 N CYS A 336 SHEET 4 AA1 5 GLU A 390 MET A 395 -1 O VAL A 393 N LYS A 350 SHEET 5 AA1 5 MET A 381 VAL A 387 -1 N VAL A 387 O GLU A 390 SHEET 1 AA2 3 GLY A 401 ALA A 402 0 SHEET 2 AA2 3 ILE A 446 LEU A 448 -1 O LEU A 448 N GLY A 401 SHEET 3 AA2 3 VAL A 454 LEU A 456 -1 O LYS A 455 N LEU A 447 SHEET 1 AA3 2 VAL A 436 ILE A 437 0 SHEET 2 AA3 2 ALA A 463 GLN A 464 -1 O ALA A 463 N ILE A 437 CRYST1 62.321 62.321 178.609 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016046 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016046 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005599 0.00000