HEADER PEPTIDE BINDING PROTEIN 10-SEP-21 7S5J TITLE SOLUTION NMR STRUCTURE OF SUBSTRATE BOUND PEPTIDASE DOMAIN FROM PCAT1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDASE C39; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL RESIDUES, 1-148; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CTA PEPTIDE; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: SEQUENCE DATABASE RESIDUES 7-30; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUNGATEICLOSTRIDIUM THERMOCELLUM (STRAIN ATCC SOURCE 3 27405 / DSM 1237 / JCM 9322 / NBRC 103400 / NCIMB 10682 / NRRL B- SOURCE 4 4536 / VPI 7372); SOURCE 5 ORGANISM_TAXID: 203119; SOURCE 6 STRAIN: ATCC 27405 / DSM 1237 / JCM 9322 / NBRC 103400 / NCIMB 10682 SOURCE 7 / NRRL B-4536 / VPI 7372; SOURCE 8 GENE: CTHE_0534; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIL; SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PMCSG20; SOURCE 14 MOL_ID: 2; SOURCE 15 ORGANISM_SCIENTIFIC: HUNGATEICLOSTRIDIUM THERMOCELLUM (STRAIN ATCC SOURCE 16 27405 / DSM 1237 / JCM 9322 / NBRC 103400 / NCIMB 10682 / NRRL B- SOURCE 17 4536 / VPI 7372); SOURCE 18 ORGANISM_TAXID: 203119; SOURCE 19 STRAIN: ATCC 27405 / DSM 1237 / JCM 9322 / NBRC 103400 / NCIMB 10682 SOURCE 20 / NRRL B-4536 / VPI 7372; SOURCE 21 GENE: CTHE_0535; SOURCE 22 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 23 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 24 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3) RIL; SOURCE 25 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 26 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS C39 PEPTIDASE DOMAIN CTA SUBSTRATE, PEPTIDE BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.BHATTACHARYA,A.PALILLO REVDAT 3 15-MAY-24 7S5J 1 REMARK REVDAT 2 23-FEB-22 7S5J 1 JRNL REVDAT 1 29-DEC-21 7S5J 0 JRNL AUTH S.BHATTACHARYA,A.PALILLO JRNL TITL STRUCTURAL AND DYNAMIC STUDIES OF THE PEPTIDASE DOMAIN FROM JRNL TITL 2 CLOSTRIDIUM THERMOCELLUM PCAT1. JRNL REF PROTEIN SCI. V. 31 498 2022 JRNL REFN ESSN 1469-896X JRNL PMID 34865273 JRNL DOI 10.1002/PRO.4248 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 3.2 REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7S5J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-SEP-21. REMARK 100 THE DEPOSITION ID IS D_1000257392. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 288 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 150 MM NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 140 UM [U-100% 13C; U-100% 15N] REMARK 210 C39 PEPTIDASE DOMAIN, 255 UM REMARK 210 CTA(5-37) PEPTIDE, 50 MM SODIUM REMARK 210 PHOSPHATE, 150 MM SODIUM REMARK 210 CHLORIDE, 5 MM DTT, 95% H2O/5% REMARK 210 D2O; 298 UM C39 PEPTIDASE DOMAIN, REMARK 210 184 UM [U-100% 13C; U-100% 15N] REMARK 210 CTA(5-37) PEPTIDE, 50 MM SODIUM REMARK 210 PHOSPHATE, 150 MM SODIUM REMARK 210 CHLORIDE, 5 MM DTT, 95% H2O/5% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HNCA; 3D HNCO; 3D REMARK 210 HCCH-COSY; 3D HCCH-TOCSY; 3D 1H- REMARK 210 13C NOESY ALIPHATIC; 3D 1H-13C REMARK 210 NOESY AROMATIC; 3D 1H-15N NOESY; REMARK 210 2D F1,F2 C13/N15 FILTERED NOESY; REMARK 210 2D F2 C13/N15 FILTERED NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 700 MHZ; 800 MHZ; 900 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; AVANCE III HD REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 2.1, 3.5, CARA 1.5, REMARK 210 CYANA 2.1 REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 19 -66.82 -109.94 REMARK 500 1 LYS A 84 -98.43 -95.60 REMARK 500 1 ARG A 87 23.62 -146.33 REMARK 500 1 GLU A 146 -69.87 -90.93 REMARK 500 2 ASN A 2 -55.46 -150.47 REMARK 500 2 LYS A 12 -173.93 -174.68 REMARK 500 2 ARG A 99 -76.12 -118.99 REMARK 500 2 GLU A 146 -41.60 -131.56 REMARK 500 2 ALA A 147 41.04 -86.19 REMARK 500 2 GLN A 149 -60.28 -106.90 REMARK 500 2 LEU B 13 -167.42 -101.83 REMARK 500 2 SER B 28 143.30 74.72 REMARK 500 3 MET A 4 89.54 60.45 REMARK 500 3 ARG A 6 32.22 -141.01 REMARK 500 3 LYS A 84 -78.33 -99.35 REMARK 500 3 ASP A 85 79.35 -111.75 REMARK 500 3 ARG A 99 -64.66 -126.93 REMARK 500 3 GLU A 143 154.70 71.54 REMARK 500 3 ILE B 29 84.30 70.24 REMARK 500 4 LYS A 11 169.12 66.48 REMARK 500 4 LYS A 84 -72.09 -110.63 REMARK 500 4 ASP A 85 55.60 -101.32 REMARK 500 4 ARG A 87 28.44 -171.22 REMARK 500 4 ARG A 99 -73.59 -115.67 REMARK 500 4 ASN B 8 47.16 -105.42 REMARK 500 5 LYS A 10 -78.82 68.06 REMARK 500 5 LYS A 11 136.54 -175.41 REMARK 500 5 LYS A 12 -80.85 -128.75 REMARK 500 5 SER A 71 136.96 70.93 REMARK 500 5 ARG A 87 23.12 -149.84 REMARK 500 5 ARG A 99 -78.42 -113.70 REMARK 500 5 GLU A 143 111.19 64.93 REMARK 500 5 ASN B 8 106.73 71.28 REMARK 500 5 ILE B 9 -53.39 -152.36 REMARK 500 6 ALA A 3 -55.73 -146.95 REMARK 500 6 ARG A 7 -46.05 -158.46 REMARK 500 6 LYS A 11 -66.11 -108.37 REMARK 500 6 TYR A 19 -71.02 -108.80 REMARK 500 6 ARG A 99 -70.47 -122.61 REMARK 500 7 CYS A 15 52.60 -162.47 REMARK 500 7 TYR A 19 -73.48 -151.54 REMARK 500 7 ARG A 87 19.07 -140.25 REMARK 500 7 ARG A 99 -68.26 -122.88 REMARK 500 7 GLU A 143 136.13 70.85 REMARK 500 7 GLN A 149 -71.07 -154.07 REMARK 500 7 LYS A 150 -171.86 55.85 REMARK 500 7 ILE B 9 -36.59 -169.60 REMARK 500 7 LEU B 13 -166.03 -102.10 REMARK 500 7 SER B 28 -16.79 -162.79 REMARK 500 8 LYS A 84 -61.40 -93.09 REMARK 500 REMARK 500 THIS ENTRY HAS 171 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9V9Z RELATED DB: PDB REMARK 900 INTACT PCAT1 STRUCTURE CONTAINING THE SUBSTRATE BOUND PEPTIDASE REMARK 900 DOMAIN REMARK 900 RELATED ID: 30950 RELATED DB: BMRB REMARK 900 SOLUTION NMR STRUCTURE OF SUBSTRATE BOUND PEPTIDASE DOMAIN FROM REMARK 900 PCAT1 DBREF 7S5J A 4 151 UNP A3DCU1 A3DCU1_HUNT2 1 148 DBREF 7S5J B 7 30 UNP A3DCU2 A3DCU2_HUNT2 7 30 SEQADV 7S5J SER A 1 UNP A3DCU1 EXPRESSION TAG SEQADV 7S5J ASN A 2 UNP A3DCU1 EXPRESSION TAG SEQADV 7S5J ALA A 3 UNP A3DCU1 EXPRESSION TAG SEQADV 7S5J ALA A 24 UNP A3DCU1 CYS 21 ENGINEERED MUTATION SEQRES 1 A 151 SER ASN ALA MET LEU ARG ARG LEU PHE LYS LYS LYS TYR SEQRES 2 A 151 VAL CYS VAL ARG GLN TYR ASP LEU THR ASP ALA GLY ALA SEQRES 3 A 151 ALA CYS LEU SER SER ILE ALA GLN TYR TYR GLY LEU LYS SEQRES 4 A 151 MET SER LEU ALA LYS ILE ARG GLU MET THR GLY THR ASP SEQRES 5 A 151 THR GLN GLY THR ASN ALA TYR GLY LEU ILE HIS ALA ALA SEQRES 6 A 151 LYS GLN LEU GLY PHE SER ALA LYS GLY VAL LYS ALA SER SEQRES 7 A 151 LYS GLU ASP LEU LEU LYS ASP PHE ARG LEU PRO ALA ILE SEQRES 8 A 151 ALA ASN VAL ILE VAL ASP ASN ARG LEU ALA HIS PHE VAL SEQRES 9 A 151 VAL ILE TYR SER ILE LYS ASN ARG ILE ILE THR VAL ALA SEQRES 10 A 151 ASP PRO GLY LYS GLY ILE VAL ARG TYR SER MET ASP ASP SEQRES 11 A 151 PHE CYS SER ILE TRP THR GLY GLY LEU VAL LEU LEU GLU SEQRES 12 A 151 PRO GLY GLU ALA PHE GLN LYS GLY SEQRES 1 B 24 LEU ASN ILE GLY ARG GLU LEU THR ASP GLU GLU LEU MET SEQRES 2 B 24 GLU MET THR GLY GLY SER THR PHE SER ILE GLN HELIX 1 AA1 ASP A 20 THR A 22 5 3 HELIX 2 AA2 ASP A 23 TYR A 36 1 14 HELIX 3 AA3 SER A 41 GLY A 50 1 10 HELIX 4 AA4 ASN A 57 LEU A 68 1 12 HELIX 5 AA5 SER A 78 LYS A 84 5 7 HELIX 6 AA6 MET A 128 TRP A 135 1 8 HELIX 7 AA7 THR B 14 MET B 21 1 8 SHEET 1 AA1 6 ALA A 72 VAL A 75 0 SHEET 2 AA1 6 LEU A 139 LEU A 142 -1 O LEU A 139 N VAL A 75 SHEET 3 AA1 6 ALA A 90 VAL A 96 -1 N ILE A 91 O VAL A 140 SHEET 4 AA1 6 LEU A 100 LYS A 110 -1 O HIS A 102 N VAL A 94 SHEET 5 AA1 6 ILE A 113 ALA A 117 -1 O THR A 115 N TYR A 107 SHEET 6 AA1 6 ILE A 123 SER A 127 -1 O TYR A 126 N ILE A 114 SHEET 1 AA2 5 ALA A 72 VAL A 75 0 SHEET 2 AA2 5 LEU A 139 LEU A 142 -1 O LEU A 139 N VAL A 75 SHEET 3 AA2 5 ALA A 90 VAL A 96 -1 N ILE A 91 O VAL A 140 SHEET 4 AA2 5 LEU A 100 LYS A 110 -1 O HIS A 102 N VAL A 94 SHEET 5 AA2 5 GLY B 24 THR B 26 -1 O SER B 25 N ALA A 101 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1