HEADER DNA BINDING PROTEIN/DNA 13-SEP-21 7S68 TITLE STRUCTURE OF HUMAN PARP1 DOMAINS (ZN1, ZN3, WGR AND HD) BOUND TO A DNA TITLE 2 DOUBLE STRAND BREAK. COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*GP*CP*CP*TP*GP*CP*AP*GP*GP*C)-3'); COMPND 3 CHAIN: M, N; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: POLY [ADP-RIBOSE] POLYMERASE 1; COMPND 7 CHAIN: B; COMPND 8 SYNONYM: PARP-1,ADP-RIBOSYLTRANSFERASE DIPHTHERIA TOXIN-LIKE 1,ARTD1, COMPND 9 DNA ADP-RIBOSYLTRANSFERASE PARP1,NAD(+) ADP-RIBOSYLTRANSFERASE 1, COMPND 10 ADPRT 1,POLY[ADP-RIBOSE] SYNTHASE 1,PROTEIN POLY-ADP- COMPND 11 RIBOSYLTRANSFERASE PARP1; COMPND 12 EC: 2.4.2.30,2.4.2.-; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: FUSION OF PARP1 ZINC FINGERS 1 AND 3 (ZN1, ZN3); COMPND 16 CHAIN: A; COMPND 17 SYNONYM: POLY [ADP-RIBOSE] POLYMERASE 1,PARP-1,ADP-RIBOSYLTRANSFERASE COMPND 18 DIPHTHERIA TOXIN-LIKE 1,ARTD1,DNA ADP-RIBOSYLTRANSFERASE PARP1,NAD(+) COMPND 19 ADP-RIBOSYLTRANSFERASE 1,ADPRT 1,POLY[ADP-RIBOSE] SYNTHASE 1,PROTEIN COMPND 20 POLY-ADP-RIBOSYLTRANSFERASE PARP1; COMPND 21 EC: 2.4.2.30,2.4.2.-; COMPND 22 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: DNA MOLECULE; SOURCE 4 ORGANISM_TAXID: 2853804; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 GENE: PARP1, ADPRT, PPOL; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 12 MOL_ID: 3; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 GENE: PARP1, ADPRT, PPOL; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PARP, ADP-RIBOSE TRANSFERASE, DNA BREAK DETECTION, ZINC FINGER, DNA KEYWDS 2 BINDING PROTEIN, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.ROULEAU-TURCOTTE,J.M.PASCAL REVDAT 4 18-OCT-23 7S68 1 REMARK REVDAT 3 31-AUG-22 7S68 1 JRNL REVDAT 2 20-JUL-22 7S68 1 JRNL REVDAT 1 29-JUN-22 7S68 0 JRNL AUTH E.ROULEAU-TURCOTTE,D.B.KRASTEV,S.J.PETTITT,C.J.LORD, JRNL AUTH 2 J.M.PASCAL JRNL TITL CAPTURED SNAPSHOTS OF PARP1 IN THE ACTIVE STATE REVEAL THE JRNL TITL 2 MECHANICS OF PARP1 ALLOSTERY. JRNL REF MOL.CELL V. 82 2939 2022 JRNL REFN ISSN 1097-2765 JRNL PMID 35793673 JRNL DOI 10.1016/J.MOLCEL.2022.06.011 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.2 REMARK 3 NUMBER OF REFLECTIONS : 12632 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.253 REMARK 3 R VALUE (WORKING SET) : 0.251 REMARK 3 FREE R VALUE : 0.292 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.690 REMARK 3 FREE R VALUE TEST SET COUNT : 592 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.4100 - 5.2400 1.00 3363 186 0.1849 0.2319 REMARK 3 2 5.2400 - 4.1600 1.00 3343 152 0.2471 0.2961 REMARK 3 3 4.1600 - 3.6300 0.76 2496 125 0.4155 0.4875 REMARK 3 4 3.6300 - 3.3000 0.86 2838 129 0.5215 0.5622 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.940 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 48.480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 169.7 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'M' AND RESID 1 THROUGH 10) REMARK 3 ORIGIN FOR THE GROUP (A): 17.5632 -57.9034 43.1736 REMARK 3 T TENSOR REMARK 3 T11: 0.8219 T22: 1.3400 REMARK 3 T33: 0.9674 T12: 0.1225 REMARK 3 T13: -0.2373 T23: -0.1945 REMARK 3 L TENSOR REMARK 3 L11: 0.5096 L22: 0.9337 REMARK 3 L33: 0.3916 L12: 0.6697 REMARK 3 L13: -0.4952 L23: -0.5692 REMARK 3 S TENSOR REMARK 3 S11: -0.6675 S12: -0.1838 S13: -0.6853 REMARK 3 S21: -0.1200 S22: -0.1744 S23: 0.2147 REMARK 3 S31: 0.5849 S32: 0.5414 S33: -0.0038 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'N' AND RESID 17 THROUGH 26) REMARK 3 ORIGIN FOR THE GROUP (A): 17.5143 -58.1985 43.2930 REMARK 3 T TENSOR REMARK 3 T11: 1.0784 T22: 1.1886 REMARK 3 T33: 1.1014 T12: 0.0905 REMARK 3 T13: -0.3246 T23: 0.1351 REMARK 3 L TENSOR REMARK 3 L11: 0.1677 L22: -0.0446 REMARK 3 L33: -0.0232 L12: -0.2377 REMARK 3 L13: 0.1459 L23: -0.2151 REMARK 3 S TENSOR REMARK 3 S11: 0.8526 S12: -0.0321 S13: -1.6319 REMARK 3 S21: -0.8110 S22: 0.7796 S23: -0.2397 REMARK 3 S31: 1.2706 S32: 0.8897 S33: 0.0078 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 532 THROUGH 776) REMARK 3 ORIGIN FOR THE GROUP (A): -4.1109 -73.9687 25.8871 REMARK 3 T TENSOR REMARK 3 T11: 1.5973 T22: 1.1052 REMARK 3 T33: 1.1716 T12: -0.2070 REMARK 3 T13: 0.1897 T23: 0.0747 REMARK 3 L TENSOR REMARK 3 L11: 4.2220 L22: 4.0475 REMARK 3 L33: 3.9810 L12: 0.5090 REMARK 3 L13: 0.4629 L23: 1.6006 REMARK 3 S TENSOR REMARK 3 S11: -0.3576 S12: 0.1315 S13: -0.5168 REMARK 3 S21: 0.2962 S22: 0.2871 S23: 0.0973 REMARK 3 S31: 1.0486 S32: -0.0566 S33: 0.0006 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 5 THROUGH 91) REMARK 3 ORIGIN FOR THE GROUP (A): 6.5665 -39.3124 30.0546 REMARK 3 T TENSOR REMARK 3 T11: 1.1595 T22: 1.0239 REMARK 3 T33: 1.4694 T12: -0.0203 REMARK 3 T13: 0.0588 T23: 0.0095 REMARK 3 L TENSOR REMARK 3 L11: 2.1396 L22: 3.0701 REMARK 3 L33: 4.0123 L12: 1.5682 REMARK 3 L13: -0.6201 L23: -0.0465 REMARK 3 S TENSOR REMARK 3 S11: 0.2861 S12: 0.0009 S13: 0.3102 REMARK 3 S21: -0.8231 S22: 0.3774 S23: -0.1360 REMARK 3 S31: -0.9950 S32: -0.2642 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 224 THROUGH 359) REMARK 3 ORIGIN FOR THE GROUP (A): -4.6694 -41.3354 50.0686 REMARK 3 T TENSOR REMARK 3 T11: 1.1696 T22: 1.6110 REMARK 3 T33: 1.2844 T12: 0.1649 REMARK 3 T13: 0.0886 T23: -0.0681 REMARK 3 L TENSOR REMARK 3 L11: 1.9199 L22: 2.7444 REMARK 3 L33: 3.2728 L12: -0.6775 REMARK 3 L13: -0.5822 L23: -0.1892 REMARK 3 S TENSOR REMARK 3 S11: 0.0461 S12: -0.4240 S13: 0.6821 REMARK 3 S21: 0.5493 S22: 0.1701 S23: 0.2167 REMARK 3 S31: -0.6219 S32: -0.1259 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7S68 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-SEP-21. REMARK 100 THE DEPOSITION ID IS D_1000259643. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13906 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 47.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 8.300 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 8.30 REMARK 200 R MERGE FOR SHELL (I) : 1.82500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4DQY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, ETHYLENE GLYCOL, HEPES PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 43.60400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.82600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 43.60400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 46.82600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: M, N, B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 507 REMARK 465 GLY B 508 REMARK 465 SER B 509 REMARK 465 SER B 510 REMARK 465 HIS B 511 REMARK 465 HIS B 512 REMARK 465 HIS B 513 REMARK 465 HIS B 514 REMARK 465 HIS B 515 REMARK 465 HIS B 516 REMARK 465 SER B 517 REMARK 465 SER B 518 REMARK 465 GLY B 519 REMARK 465 LEU B 520 REMARK 465 VAL B 521 REMARK 465 PRO B 522 REMARK 465 ARG B 523 REMARK 465 GLY B 524 REMARK 465 SER B 525 REMARK 465 HIS B 526 REMARK 465 LEU B 527 REMARK 465 LYS B 528 REMARK 465 GLY B 529 REMARK 465 GLY B 530 REMARK 465 ALA B 531 REMARK 465 TYR B 659 REMARK 465 GLY B 660 REMARK 465 GLN B 661 REMARK 465 ASP B 662 REMARK 465 GLU B 663 REMARK 465 GLU B 664 REMARK 465 ALA B 665 REMARK 465 VAL B 666 REMARK 465 LYS B 667 REMARK 465 LYS B 668 REMARK 465 LEU B 669 REMARK 465 THR B 670 REMARK 465 VAL B 671 REMARK 465 ASN B 672 REMARK 465 PRO B 673 REMARK 465 GLY B 674 REMARK 465 THR B 675 REMARK 465 LYS B 676 REMARK 465 PHE B 677 REMARK 465 ASP B 678 REMARK 465 LEU B 777 REMARK 465 LEU B 778 REMARK 465 ARG B 779 REMARK 465 GLY B 780 REMARK 465 GLY B 781 REMARK 465 SER B 782 REMARK 465 ASP B 783 REMARK 465 ASP B 784 REMARK 465 SER B 785 REMARK 465 SER B 786 REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 3 REMARK 465 SER A 4 REMARK 465 GLY A 202 REMARK 465 GLY A 203 REMARK 465 VAL A 204 REMARK 465 THR A 205 REMARK 465 GLY A 206 REMARK 465 LYS A 207 REMARK 465 ARG A 208 REMARK 465 LYS A 209 REMARK 465 GLY A 210 REMARK 465 ASP A 211 REMARK 465 GLU A 212 REMARK 465 VAL A 213 REMARK 465 ASP A 214 REMARK 465 GLY A 215 REMARK 465 VAL A 216 REMARK 465 ASP A 217 REMARK 465 GLU A 218 REMARK 465 VAL A 219 REMARK 465 ALA A 220 REMARK 465 LYS A 221 REMARK 465 LYS A 222 REMARK 465 LYS A 223 REMARK 465 GLU A 360 REMARK 465 THR A 361 REMARK 465 SER A 362 REMARK 465 ALA A 363 REMARK 465 SER A 364 REMARK 465 VAL A 365 REMARK 465 ALA A 366 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 339 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 340 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 341 CG CD OE1 OE2 REMARK 470 ILE A 342 CG1 CG2 CD1 REMARK 470 SER A 343 OG REMARK 470 TYR A 344 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A 345 CG CD1 CD2 REMARK 470 LYS A 346 CG CD CE NZ REMARK 470 LYS A 347 CG CD CE NZ REMARK 470 LEU A 348 CG CD1 CD2 REMARK 470 LYS A 349 CG CD CE NZ REMARK 470 VAL A 350 CG1 CG2 REMARK 470 LYS A 351 CG CD CE NZ REMARK 470 LYS A 352 CG CD CE NZ REMARK 470 GLN A 353 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS B 551 71.72 -111.55 REMARK 500 PHE B 553 64.65 -69.25 REMARK 500 LYS B 579 89.72 -165.87 REMARK 500 ASN B 581 50.13 -102.96 REMARK 500 PHE B 631 46.06 -88.62 REMARK 500 LEU B 752 68.95 -113.03 REMARK 500 TYR B 775 85.09 -67.22 REMARK 500 ASP A 6 38.18 -96.58 REMARK 500 GLU A 12 -167.23 -169.83 REMARK 500 PRO A 42 0.22 -67.92 REMARK 500 LYS A 59 44.40 -93.89 REMARK 500 VAL A 69 -34.52 -142.79 REMARK 500 GLU A 297 -63.62 -98.90 REMARK 500 THR A 327 88.22 -150.39 REMARK 500 PRO A 336 -175.12 -67.37 REMARK 500 PHE A 339 54.87 -144.47 REMARK 500 LEU A 345 -53.59 -140.45 REMARK 500 LYS A 351 -175.76 67.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 21 SG REMARK 620 2 CYS A 24 SG 85.3 REMARK 620 3 HIS A 53 ND1 92.6 81.9 REMARK 620 4 CYS A 56 SG 138.2 115.0 124.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 295 SG REMARK 620 2 CYS A 298 SG 103.1 REMARK 620 3 CYS A 311 SG 122.2 82.7 REMARK 620 4 CYS A 321 SG 127.6 100.9 106.4 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7S6H RELATED DB: PDB REMARK 900 RELATED ID: 7S6M RELATED DB: PDB REMARK 900 RELATED ID: 7S81 RELATED DB: PDB DBREF 7S68 M 1 10 PDB 7S68 7S68 1 10 DBREF 7S68 N 17 26 PDB 7S68 7S68 17 26 DBREF 7S68 B 527 786 UNP P09874 PARP1_HUMAN 527 786 DBREF 7S68 A 1 205 UNP P09874 PARP1_HUMAN 1 95 DBREF 7S68 A 206 366 UNP P09874 PARP1_HUMAN 206 366 SEQADV 7S68 MET B 507 UNP P09874 INITIATING METHIONINE SEQADV 7S68 GLY B 508 UNP P09874 EXPRESSION TAG SEQADV 7S68 SER B 509 UNP P09874 EXPRESSION TAG SEQADV 7S68 SER B 510 UNP P09874 EXPRESSION TAG SEQADV 7S68 HIS B 511 UNP P09874 EXPRESSION TAG SEQADV 7S68 HIS B 512 UNP P09874 EXPRESSION TAG SEQADV 7S68 HIS B 513 UNP P09874 EXPRESSION TAG SEQADV 7S68 HIS B 514 UNP P09874 EXPRESSION TAG SEQADV 7S68 HIS B 515 UNP P09874 EXPRESSION TAG SEQADV 7S68 HIS B 516 UNP P09874 EXPRESSION TAG SEQADV 7S68 SER B 517 UNP P09874 EXPRESSION TAG SEQADV 7S68 SER B 518 UNP P09874 EXPRESSION TAG SEQADV 7S68 GLY B 519 UNP P09874 EXPRESSION TAG SEQADV 7S68 LEU B 520 UNP P09874 EXPRESSION TAG SEQADV 7S68 VAL B 521 UNP P09874 EXPRESSION TAG SEQADV 7S68 PRO B 522 UNP P09874 EXPRESSION TAG SEQADV 7S68 ARG B 523 UNP P09874 EXPRESSION TAG SEQADV 7S68 GLY B 524 UNP P09874 EXPRESSION TAG SEQADV 7S68 SER B 525 UNP P09874 EXPRESSION TAG SEQADV 7S68 HIS B 526 UNP P09874 EXPRESSION TAG SEQADV 7S68 B UNP P09874 SER 663 DELETION SEQADV 7S68 B UNP P09874 LYS 664 DELETION SEQADV 7S68 B UNP P09874 LEU 665 DELETION SEQADV 7S68 B UNP P09874 PRO 666 DELETION SEQADV 7S68 B UNP P09874 LYS 667 DELETION SEQADV 7S68 B UNP P09874 PRO 668 DELETION SEQADV 7S68 B UNP P09874 VAL 669 DELETION SEQADV 7S68 B UNP P09874 GLN 670 DELETION SEQADV 7S68 B UNP P09874 ASP 671 DELETION SEQADV 7S68 B UNP P09874 LEU 672 DELETION SEQADV 7S68 B UNP P09874 ILE 673 DELETION SEQADV 7S68 B UNP P09874 LYS 674 DELETION SEQADV 7S68 B UNP P09874 MET 675 DELETION SEQADV 7S68 B UNP P09874 ILE 676 DELETION SEQADV 7S68 ALA B 762 UNP P09874 VAL 762 VARIANT SEQADV 7S68 MET A -19 UNP P09874 INITIATING METHIONINE SEQADV 7S68 GLY A -18 UNP P09874 EXPRESSION TAG SEQADV 7S68 SER A -17 UNP P09874 EXPRESSION TAG SEQADV 7S68 SER A -16 UNP P09874 EXPRESSION TAG SEQADV 7S68 HIS A -15 UNP P09874 EXPRESSION TAG SEQADV 7S68 HIS A -14 UNP P09874 EXPRESSION TAG SEQADV 7S68 HIS A -13 UNP P09874 EXPRESSION TAG SEQADV 7S68 HIS A -12 UNP P09874 EXPRESSION TAG SEQADV 7S68 HIS A -11 UNP P09874 EXPRESSION TAG SEQADV 7S68 HIS A -10 UNP P09874 EXPRESSION TAG SEQADV 7S68 SER A -9 UNP P09874 EXPRESSION TAG SEQADV 7S68 SER A -8 UNP P09874 EXPRESSION TAG SEQADV 7S68 GLY A -7 UNP P09874 EXPRESSION TAG SEQADV 7S68 LEU A -6 UNP P09874 EXPRESSION TAG SEQADV 7S68 VAL A -5 UNP P09874 EXPRESSION TAG SEQADV 7S68 PRO A -4 UNP P09874 EXPRESSION TAG SEQADV 7S68 ARG A -3 UNP P09874 EXPRESSION TAG SEQADV 7S68 GLY A -2 UNP P09874 EXPRESSION TAG SEQADV 7S68 SER A -1 UNP P09874 EXPRESSION TAG SEQADV 7S68 HIS A 0 UNP P09874 EXPRESSION TAG SEQRES 1 M 10 DG DC DC DT DG DC DA DG DG DC SEQRES 1 N 10 DG DC DC DT DG DC DA DG DG DC SEQRES 1 B 266 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 266 LEU VAL PRO ARG GLY SER HIS LEU LYS GLY GLY ALA ALA SEQRES 3 B 266 VAL ASP PRO ASP SER GLY LEU GLU HIS SER ALA HIS VAL SEQRES 4 B 266 LEU GLU LYS GLY GLY LYS VAL PHE SER ALA THR LEU GLY SEQRES 5 B 266 LEU VAL ASP ILE VAL LYS GLY THR ASN SER TYR TYR LYS SEQRES 6 B 266 LEU GLN LEU LEU GLU ASP ASP LYS GLU ASN ARG TYR TRP SEQRES 7 B 266 ILE PHE ARG SER TRP GLY ARG VAL GLY THR VAL ILE GLY SEQRES 8 B 266 SER ASN LYS LEU GLU GLN MET PRO SER LYS GLU ASP ALA SEQRES 9 B 266 ILE GLU HIS PHE MET LYS LEU TYR GLU GLU LYS THR GLY SEQRES 10 B 266 ASN ALA TRP HIS SER LYS ASN PHE THR LYS TYR PRO LYS SEQRES 11 B 266 LYS PHE TYR PRO LEU GLU ILE ASP TYR GLY GLN ASP GLU SEQRES 12 B 266 GLU ALA VAL LYS LYS LEU THR VAL ASN PRO GLY THR LYS SEQRES 13 B 266 PHE ASP VAL GLU SER MET LYS LYS ALA MET VAL GLU TYR SEQRES 14 B 266 GLU ILE ASP LEU GLN LYS MET PRO LEU GLY LYS LEU SER SEQRES 15 B 266 LYS ARG GLN ILE GLN ALA ALA TYR SER ILE LEU SER GLU SEQRES 16 B 266 VAL GLN GLN ALA VAL SER GLN GLY SER SER ASP SER GLN SEQRES 17 B 266 ILE LEU ASP LEU SER ASN ARG PHE TYR THR LEU ILE PRO SEQRES 18 B 266 HIS ASP PHE GLY MET LYS LYS PRO PRO LEU LEU ASN ASN SEQRES 19 B 266 ALA ASP SER VAL GLN ALA LYS ALA GLU MET LEU ASP ASN SEQRES 20 B 266 LEU LEU ASP ILE GLU VAL ALA TYR SER LEU LEU ARG GLY SEQRES 21 B 266 GLY SER ASP ASP SER SER SEQRES 1 A 276 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 276 LEU VAL PRO ARG GLY SER HIS MET ALA GLU SER SER ASP SEQRES 3 A 276 LYS LEU TYR ARG VAL GLU TYR ALA LYS SER GLY ARG ALA SEQRES 4 A 276 SER CYS LYS LYS CYS SER GLU SER ILE PRO LYS ASP SER SEQRES 5 A 276 LEU ARG MET ALA ILE MET VAL GLN SER PRO MET PHE ASP SEQRES 6 A 276 GLY LYS VAL PRO HIS TRP TYR HIS PHE SER CYS PHE TRP SEQRES 7 A 276 LYS VAL GLY HIS SER ILE ARG HIS PRO ASP VAL GLU VAL SEQRES 8 A 276 ASP GLY PHE SER GLU LEU ARG TRP ASP ASP GLN GLN LYS SEQRES 9 A 276 VAL LYS LYS THR ALA GLU ALA GLY GLY VAL THR GLY LYS SEQRES 10 A 276 ARG LYS GLY ASP GLU VAL ASP GLY VAL ASP GLU VAL ALA SEQRES 11 A 276 LYS LYS LYS SER LYS LYS GLU LYS ASP LYS ASP SER LYS SEQRES 12 A 276 LEU GLU LYS ALA LEU LYS ALA GLN ASN ASP LEU ILE TRP SEQRES 13 A 276 ASN ILE LYS ASP GLU LEU LYS LYS VAL CYS SER THR ASN SEQRES 14 A 276 ASP LEU LYS GLU LEU LEU ILE PHE ASN LYS GLN GLN VAL SEQRES 15 A 276 PRO SER GLY GLU SER ALA ILE LEU ASP ARG VAL ALA ASP SEQRES 16 A 276 GLY MET VAL PHE GLY ALA LEU LEU PRO CYS GLU GLU CYS SEQRES 17 A 276 SER GLY GLN LEU VAL PHE LYS SER ASP ALA TYR TYR CYS SEQRES 18 A 276 THR GLY ASP VAL THR ALA TRP THR LYS CYS MET VAL LYS SEQRES 19 A 276 THR GLN THR PRO ASN ARG LYS GLU TRP VAL THR PRO LYS SEQRES 20 A 276 GLU PHE ARG GLU ILE SER TYR LEU LYS LYS LEU LYS VAL SEQRES 21 A 276 LYS LYS GLN ASP ARG ILE PHE PRO PRO GLU THR SER ALA SEQRES 22 A 276 SER VAL ALA HET ZN A 401 1 HET ZN A 402 1 HETNAM ZN ZINC ION FORMUL 5 ZN 2(ZN 2+) HELIX 1 AA1 ASP B 534 GLY B 538 5 5 HELIX 2 AA2 GLU B 608 GLY B 623 1 16 HELIX 3 AA3 GLU B 680 MET B 696 1 17 HELIX 4 AA4 SER B 702 GLY B 723 1 22 HELIX 5 AA5 SER B 725 ILE B 740 1 16 HELIX 6 AA6 ASN B 754 TYR B 775 1 22 HELIX 7 AA7 HIS A 66 GLU A 70 1 5 HELIX 8 AA8 ARG A 78 ALA A 89 1 12 HELIX 9 AA9 LYS A 225 CYS A 256 1 32 HELIX 10 AB1 SER A 257 ASN A 268 1 12 HELIX 11 AB2 GLY A 275 PHE A 289 1 15 HELIX 12 AB3 GLU A 341 LYS A 346 1 6 SHEET 1 AA1 4 ALA B 543 VAL B 545 0 SHEET 2 AA1 4 THR B 566 ASP B 577 -1 O GLU B 576 N HIS B 544 SHEET 3 AA1 4 TYR B 583 ARG B 591 -1 O PHE B 586 N GLN B 573 SHEET 4 AA1 4 ASN B 599 GLN B 603 -1 O GLU B 602 N ILE B 585 SHEET 1 AA2 4 ALA B 543 VAL B 545 0 SHEET 2 AA2 4 THR B 566 ASP B 577 -1 O GLU B 576 N HIS B 544 SHEET 3 AA2 4 SER B 554 ASP B 561 -1 N LEU B 557 O TYR B 570 SHEET 4 AA2 4 TYR B 639 PRO B 640 -1 O TYR B 639 N GLY B 558 SHEET 1 AA3 4 LYS A 47 HIS A 53 0 SHEET 2 AA3 4 LEU A 33 GLN A 40 -1 N ILE A 37 O HIS A 50 SHEET 3 AA3 4 TYR A 9 TYR A 13 -1 N GLU A 12 O ARG A 34 SHEET 4 AA3 4 VAL A 71 ASP A 72 1 O ASP A 72 N TYR A 9 SHEET 1 AA4 2 ALA A 291 LEU A 292 0 SHEET 2 AA4 2 ARG A 330 LYS A 331 -1 O LYS A 331 N ALA A 291 SHEET 1 AA5 3 LEU A 302 PHE A 304 0 SHEET 2 AA5 3 TYR A 309 CYS A 311 -1 O TYR A 310 N VAL A 303 SHEET 3 AA5 3 LYS A 324 THR A 325 -1 O THR A 325 N TYR A 309 LINK SG CYS A 21 ZN ZN A 402 1555 1555 2.37 LINK SG CYS A 24 ZN ZN A 402 1555 1555 2.29 LINK ND1 HIS A 53 ZN ZN A 402 1555 1555 2.04 LINK SG CYS A 56 ZN ZN A 402 1555 1555 2.34 LINK SG CYS A 295 ZN ZN A 401 1555 1555 2.26 LINK SG CYS A 298 ZN ZN A 401 1555 1555 2.22 LINK SG CYS A 311 ZN ZN A 401 1555 1555 2.28 LINK SG CYS A 321 ZN ZN A 401 1555 1555 2.30 CRYST1 87.208 93.652 119.259 90.00 106.29 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011467 0.000000 0.003350 0.00000 SCALE2 0.000000 0.010678 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008736 0.00000