HEADER TRANSPORT PROTEIN 14-SEP-21 7S6F TITLE CRYSTAL STRUCTURE OF URTA1 FROM SYNECHOCOCCUS WH8102 IN COMPLEX WITH TITLE 2 UREA AND CALCIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UREA ABC TRANSPORTER, UREA BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCOCCUS SP. (STRAIN WH8102); SOURCE 3 ORGANISM_TAXID: 84588; SOURCE 4 STRAIN: WH8102; SOURCE 5 GENE: URTA1, SYNW2442; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: LEMO21; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: POPINM KEYWDS SUBSTRATE-BINDING PROTEIN, MARINE CYANOBACTERIA, UREA-BINDING KEYWDS 2 PROTEIN, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.S.SHAH,H.MIKOLAJEK,C.M.ORR,V.MYKHAYLYK,R.J.OWENS,I.T.PAULSEN REVDAT 1 20-OCT-21 7S6F 0 JRNL AUTH B.S.SHAH,H.MIKOLAJEK,C.M.ORR,V.MYKHAYLYK,R.OWENS,I.T.PAULSEN JRNL TITL CRYSTAL STRUCTURE OF URTA1 FROM SYNECHOCOCCUS WH8102 IN JRNL TITL 2 COMPLEX WITH UREA AND CALCIUM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 71.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.1 REMARK 3 NUMBER OF REFLECTIONS : 35358 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1775 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2092 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 77.64 REMARK 3 BIN R VALUE (WORKING SET) : 0.3180 REMARK 3 BIN FREE R VALUE SET COUNT : 85 REMARK 3 BIN FREE R VALUE : 0.2830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3064 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 263 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.77700 REMARK 3 B22 (A**2) : 0.79700 REMARK 3 B33 (A**2) : -1.57400 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.122 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.113 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.084 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.849 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3148 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2891 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4267 ; 1.612 ; 1.645 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6705 ; 1.409 ; 1.582 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 394 ; 6.913 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 149 ;37.760 ;25.436 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 516 ;14.113 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;10.763 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 410 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3609 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 681 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 598 ; 0.200 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 20 ; 0.158 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1514 ; 0.171 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 216 ; 0.134 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 11 ; 0.106 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 1 ; 0.012 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1580 ; 2.299 ; 3.313 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1578 ; 2.298 ; 3.313 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1972 ; 2.854 ; 4.960 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1973 ; 2.854 ; 4.961 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1568 ; 3.531 ; 3.622 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1569 ; 3.530 ; 3.622 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2295 ; 5.090 ; 5.296 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2296 ; 5.089 ; 5.296 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7S6F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-SEP-21. REMARK 100 THE DEPOSITION ID IS D_1000259485. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 50 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I23 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 2.7552 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 12M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35399 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 120.460 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 200 DATA REDUNDANCY : 38.40 REMARK 200 R MERGE (I) : 0.15600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 9.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 120.4 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 53.00 REMARK 200 R MERGE FOR SHELL (I) : 0.09300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: CRANK2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M SODIUM HEPES: MOPS PH 7.5, 0.03 REMARK 280 MGCL2, 0.03 CACL2; 20 % PEG 500 MME; 10 % PEG 20000 CRYO: 30 % REMARK 280 ETHYLENE GLYCOL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 23.75500 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.23000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 23.75500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 60.23000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CA CA A 507 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 GLY A 2 REMARK 465 GLU A 3 REMARK 465 GLU A 4 REMARK 465 THR A 5 REMARK 465 ALA A 6 REMARK 465 ALA A 7 REMARK 465 PRO A 8 REMARK 465 ALA A 9 REMARK 465 SER A 10 REMARK 465 LEU A 406 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 405 CA - C - O ANGL. DEV. = -13.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 95 -63.29 -142.46 REMARK 500 ALA A 112 -155.99 -110.40 REMARK 500 CYS A 125 67.91 -160.30 REMARK 500 GLN A 139 -82.97 -154.83 REMARK 500 ALA A 251 -157.22 -153.55 REMARK 500 LYS A 400 -86.99 -117.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 505 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 24 O REMARK 620 2 HOH A 605 O 176.9 REMARK 620 3 HOH A 665 O 89.3 87.9 REMARK 620 4 HOH A 670 O 93.6 87.9 149.1 REMARK 620 5 HOH A 704 O 91.4 89.0 69.7 140.8 REMARK 620 6 HOH A 709 O 88.1 89.6 71.8 77.5 141.5 REMARK 620 7 HOH A 813 O 94.7 88.3 136.6 73.9 67.0 151.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 504 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 111 O REMARK 620 2 ASP A 324 OD1 116.9 REMARK 620 3 ASP A 324 OD2 75.6 48.0 REMARK 620 4 ASP A 325 OD1 95.0 94.9 74.9 REMARK 620 5 HOH A 648 O 83.8 80.2 98.7 173.6 REMARK 620 6 HOH A 719 O 162.0 81.0 121.1 84.0 99.1 REMARK 620 7 HOH A 756 O 76.1 155.0 151.6 105.6 80.2 86.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 508 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 132 O REMARK 620 2 SER A 304 OG 97.3 REMARK 620 3 GLN A 353 OE1 90.2 166.3 REMARK 620 4 HOH A 621 O 168.0 83.5 86.9 REMARK 620 5 HOH A 684 O 102.6 91.6 98.0 89.3 REMARK 620 6 HOH A 779 O 89.6 93.0 75.4 78.4 166.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 507 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 240 OD1 REMARK 620 2 ASP A 240 OD1 0.0 REMARK 620 N 1 DBREF 7S6F A 1 406 UNP Q7U3J0 Q7U3J0_SYNPX 34 439 SEQRES 1 A 406 GLY GLY GLU GLU THR ALA ALA PRO ALA SER ASP PHE ASP SEQRES 2 A 406 ASP LYS VAL THR VAL GLY ILE LEU HIS SER LEU THR GLY SEQRES 3 A 406 THR MET ALA ILE SER GLU SER THR LEU VAL ASP THR GLU SEQRES 4 A 406 LYS MET ALA ILE ASP GLU ILE ASN ALA ALA GLY GLY VAL SEQRES 5 A 406 GLU VAL ASP GLY LYS LYS TYR LYS ILE GLU TYR ILE VAL SEQRES 6 A 406 GLU ASP GLY ALA SER ASP TRP PRO THR PHE ALA GLU LYS SEQRES 7 A 406 SER LYS LYS LEU ILE ASP GLN ASP GLN VAL PRO VAL VAL SEQRES 8 A 406 PHE GLY GLY TRP THR SER ALA SER ARG LYS ALA MET LEU SEQRES 9 A 406 PRO VAL TYR GLU SER LYS ASN ALA PHE LEU TYR TYR PRO SEQRES 10 A 406 ILE GLN TYR GLU GLY GLN GLU CYS SER ASN ASN ILE PHE SEQRES 11 A 406 TYR THR GLY ALA THR PRO ASN GLN GLN SER GLU PRO ALA SEQRES 12 A 406 THR LYS PHE MET TYR GLU LYS SER PRO ALA ALA GLY LYS SEQRES 13 A 406 PRO PHE PHE LEU VAL GLY SER ASP TYR VAL PHE PRO ARG SEQRES 14 A 406 THR SER ASN THR ILE THR LYS GLU GLN LEU ALA SER LEU SEQRES 15 A 406 GLY GLY GLU VAL VAL GLY GLU ASP TYR LEU PRO LEU GLY SEQRES 16 A 406 ASN THR GLU VAL ALA PRO ILE ILE ALA LYS ILE LYS LYS SEQRES 17 A 406 ALA LEU PRO ASP GLY GLY VAL ILE ILE ASN THR LEU ASN SEQRES 18 A 406 GLY ASP GLN ASN VAL ALA PHE PHE LYS GLN ILE GLN ASP SEQRES 19 A 406 ALA GLY ILE THR PRO ASP ASN GLY TYR TYR VAL MET SER SEQRES 20 A 406 TYR SER ILE ALA GLU GLU GLU ILE SER THR ILE GLY SER SEQRES 21 A 406 GLU PHE LEU GLU GLY HIS TYR GLY ALA TRP ASN TYR MET SEQRES 22 A 406 MET SER ILE ASP THR PRO ALA SER LYS LYS PHE ALA ALA SEQRES 23 A 406 ASP PHE LYS ALA LYS TYR GLY ALA ASP ARG GLN VAL ALA SEQRES 24 A 406 ASP PRO GLN GLU SER ALA TYR ASN MET VAL TYR LEU TRP SEQRES 25 A 406 LYS LYS ALA VAL GLU LYS ALA ASN SER PHE ASP ASP ASP SEQRES 26 A 406 LYS VAL ARG GLU VAL LEU VAL GLY ILE GLU PHE ASP ALA SEQRES 27 A 406 PRO GLN GLY PRO VAL LYS VAL MET PRO ASN HIS HIS LEU SEQRES 28 A 406 SER GLN THR VAL ARG ILE GLY GLN ILE THR ALA ASP GLY SEQRES 29 A 406 GLN PHE GLU ILE LEU GLU SER THR ASP GLY PRO VAL ALA SEQRES 30 A 406 PRO GLN ALA TRP ASN GLN PHE GLU PRO SER SER LYS GLY SEQRES 31 A 406 PHE ALA CYS ASP TRP THR ASP ALA ALA LYS GLY GLU LYS SEQRES 32 A 406 TYR LYS LEU HET URE A 501 8 HET EDO A 502 10 HET EDO A 503 10 HET CA A 504 1 HET CA A 505 1 HET CA A 506 1 HET CA A 507 1 HET CA A 508 1 HETNAM URE UREA HETNAM EDO 1,2-ETHANEDIOL HETNAM CA CALCIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 URE C H4 N2 O FORMUL 3 EDO 2(C2 H6 O2) FORMUL 5 CA 5(CA 2+) FORMUL 10 HOH *263(H2 O) HELIX 1 AA1 MET A 28 ALA A 49 1 22 HELIX 2 AA2 ASP A 71 GLN A 85 1 15 HELIX 3 AA3 THR A 96 LYS A 110 1 15 HELIX 4 AA4 THR A 135 GLN A 138 5 4 HELIX 5 AA5 GLN A 139 LYS A 150 1 12 HELIX 6 AA6 TYR A 165 GLY A 183 1 19 HELIX 7 AA7 VAL A 199 LEU A 210 1 12 HELIX 8 AA8 ASP A 223 ALA A 235 1 13 HELIX 9 AA9 THR A 238 ASN A 241 5 4 HELIX 10 AB1 ALA A 251 GLY A 259 1 9 HELIX 11 AB2 SER A 260 LEU A 263 5 4 HELIX 12 AB3 THR A 278 GLY A 293 1 16 HELIX 13 AB4 ALA A 299 ASN A 320 1 22 HELIX 14 AB5 ASP A 323 VAL A 332 1 10 SHEET 1 AA1 6 VAL A 52 VAL A 54 0 SHEET 2 AA1 6 LYS A 57 ASP A 67 -1 O TYR A 59 N VAL A 52 SHEET 3 AA1 6 ASP A 14 HIS A 22 1 N VAL A 16 O GLU A 62 SHEET 4 AA1 6 VAL A 91 GLY A 93 1 O PHE A 92 N GLY A 19 SHEET 5 AA1 6 LEU A 114 TYR A 116 1 O TYR A 115 N VAL A 91 SHEET 6 AA1 6 ILE A 129 TYR A 131 1 O PHE A 130 N TYR A 116 SHEET 1 AA2 7 VAL A 186 LEU A 192 0 SHEET 2 AA2 7 PHE A 158 SER A 163 1 N LEU A 160 O GLY A 188 SHEET 3 AA2 7 GLY A 214 THR A 219 1 O ILE A 217 N VAL A 161 SHEET 4 AA2 7 TYR A 243 SER A 247 1 O TYR A 244 N ILE A 216 SHEET 5 AA2 7 TYR A 267 TRP A 270 1 O TYR A 267 N VAL A 245 SHEET 6 AA2 7 ARG A 356 ILE A 360 -1 O ARG A 356 N TRP A 270 SHEET 7 AA2 7 PHE A 366 SER A 371 -1 O LEU A 369 N ILE A 357 SHEET 1 AA3 3 GLU A 335 ALA A 338 0 SHEET 2 AA3 3 GLY A 341 VAL A 345 -1 O VAL A 343 N PHE A 336 SHEET 3 AA3 3 LEU A 351 SER A 352 -1 O SER A 352 N LYS A 344 SHEET 1 AA4 2 ALA A 392 ASP A 394 0 SHEET 2 AA4 2 GLY A 401 TYR A 404 -1 O TYR A 404 N ALA A 392 SSBOND 1 CYS A 125 CYS A 393 1555 1555 2.08 LINK O LEU A 24 CA CA A 505 1555 1555 2.37 LINK O ASN A 111 CA CA A 504 1555 1555 2.42 LINK O THR A 132 CA CA A 508 1555 1555 2.32 LINK OD1 ASP A 240 CA CA A 507 1555 1555 3.16 LINK OD1 ASP A 240 CA CA A 507 1555 2657 3.16 LINK OG SER A 304 CA CA A 508 1555 1555 2.41 LINK OD1 ASP A 324 CA CA A 504 1555 1555 2.33 LINK OD2 ASP A 324 CA CA A 504 1555 1555 2.95 LINK OD1 ASP A 325 CA CA A 504 1555 1555 2.40 LINK OE1 GLN A 353 CA CA A 508 1555 1555 2.38 LINK CA CA A 504 O HOH A 648 1555 1555 2.46 LINK CA CA A 504 O HOH A 719 1555 1555 2.42 LINK CA CA A 504 O HOH A 756 1555 1555 2.20 LINK CA CA A 505 O HOH A 605 1555 2557 2.41 LINK CA CA A 505 O HOH A 665 1555 2557 2.35 LINK CA CA A 505 O HOH A 670 1555 2557 2.48 LINK CA CA A 505 O HOH A 704 1555 1555 2.36 LINK CA CA A 505 O HOH A 709 1555 2557 2.22 LINK CA CA A 505 O HOH A 813 1555 2557 2.50 LINK CA CA A 506 O HOH A 825 1555 1555 2.59 LINK CA CA A 508 O HOH A 621 1555 1555 2.45 LINK CA CA A 508 O HOH A 684 1555 1555 2.42 LINK CA CA A 508 O HOH A 779 1555 1555 2.58 CRYST1 47.510 71.390 120.460 90.00 90.00 90.00 P 21 2 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021048 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014008 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008302 0.00000