HEADER TRANSFERASE 14-SEP-21 7S6N TITLE N-ACETYLGLUCOSAMINE-1-PHOSPHOTRANSFERASE (GNPT) ALPHA AND BETA TITLE 2 SUBUNITS (GNPTAB) CATALYTIC DOMAIN, FROM ZEBRAFISH COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-ACETYLGLUCOSAMINE-1-PHOSPHOTRANSFERASE (GNPT) ALPHA COMPND 3 (GNPTAB) CATALYTIC DOMAIN,N-ACETYLGLUCOSAMINE-1-PHOSPHOTRANSFERASE COMPND 4 SUBUNIT BETA; COMPND 5 CHAIN: A, B; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRAFISH, BRACHYDANIO RERIO; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 GENE: GNPTAB, GNPTA, SI:CH211-234F20.3, ZGC:122985; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS GNPT, LYSOSOME, MANNOSE 6-PHOSPHATE, MUCOLIPIDOSIS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.GORELIK,K.ILLES,B.NAGAR REVDAT 3 03-APR-24 7S6N 1 REMARK REVDAT 2 17-AUG-22 7S6N 1 JRNL REVDAT 1 25-MAY-22 7S6N 0 JRNL AUTH A.GORELIK,K.ILLES,K.H.BUI,B.NAGAR JRNL TITL STRUCTURES OF THE MANNOSE-6-PHOSPHATE PATHWAY ENZYME, JRNL TITL 2 GLCNAC-1-PHOSPHOTRANSFERASE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 119 18119 2022 JRNL REFN ESSN 1091-6490 JRNL PMID 35939698 JRNL DOI 10.1073/PNAS.2203518119 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 71.5 REMARK 3 NUMBER OF REFLECTIONS : 63354 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.730 REMARK 3 FREE R VALUE TEST SET COUNT : 2996 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.4200 - 7.4400 0.99 3990 197 0.2156 0.2579 REMARK 3 2 7.4400 - 5.9100 1.00 4008 188 0.2194 0.2604 REMARK 3 3 5.9100 - 5.1600 0.99 3992 204 0.1908 0.2104 REMARK 3 4 5.1600 - 4.6900 1.00 4034 199 0.1472 0.2137 REMARK 3 5 4.6900 - 4.3600 1.00 3990 200 0.1362 0.1810 REMARK 3 6 4.3600 - 4.1000 0.99 3993 199 0.1299 0.1765 REMARK 3 7 4.1000 - 3.8900 0.98 3974 199 0.1467 0.1968 REMARK 3 8 3.8900 - 3.7200 0.93 3690 191 0.1569 0.2011 REMARK 3 9 3.7200 - 3.5800 0.93 3747 194 0.1696 0.2040 REMARK 3 10 3.5800 - 3.4600 0.79 3136 132 0.1878 0.3219 REMARK 3 11 3.4600 - 3.3500 0.76 3073 155 0.2001 0.2467 REMARK 3 12 3.3500 - 3.2500 0.71 2863 145 0.1970 0.2400 REMARK 3 13 3.2500 - 3.1700 0.66 2680 130 0.2023 0.2386 REMARK 3 14 3.1700 - 3.0900 0.60 2409 120 0.2189 0.2874 REMARK 3 15 3.0900 - 3.0200 0.55 2238 113 0.2396 0.2892 REMARK 3 16 3.0200 - 2.9600 0.51 2061 99 0.2453 0.2873 REMARK 3 17 2.9600 - 2.9000 0.46 1864 89 0.2505 0.3052 REMARK 3 18 2.9000 - 2.8400 0.40 1627 86 0.2701 0.3011 REMARK 3 19 2.8400 - 2.7900 0.32 1252 70 0.2955 0.3483 REMARK 3 20 2.7900 - 2.7400 0.25 1014 49 0.2821 0.3826 REMARK 3 21 2.7400 - 2.7000 0.18 723 37 0.3205 0.3211 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.301 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.445 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.39 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 7589 REMARK 3 ANGLE : 0.642 10292 REMARK 3 CHIRALITY : 0.045 1167 REMARK 3 PLANARITY : 0.006 1306 REMARK 3 DIHEDRAL : 12.599 2874 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7S6N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-SEP-21. REMARK 100 THE DEPOSITION ID IS D_1000259708. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-AUG-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08B1-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.18 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63354 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.5 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: ALPHAFOLD-2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG3350, 0.1M HEPES PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.30250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 34 REMARK 465 ARG A 35 REMARK 465 HIS A 36 REMARK 465 HIS A 37 REMARK 465 HIS A 38 REMARK 465 HIS A 39 REMARK 465 HIS A 40 REMARK 465 HIS A 41 REMARK 465 GLY A 42 REMARK 465 SER A 43 REMARK 465 GLU A 44 REMARK 465 VAL A 45 REMARK 465 VAL A 46 REMARK 465 VAL A 47 REMARK 465 GLU A 48 REMARK 465 TRP A 49 REMARK 465 SER A 50 REMARK 465 ARG A 51 REMARK 465 ARG A 106 REMARK 465 ASP A 107 REMARK 465 PRO A 108 REMARK 465 LEU A 109 REMARK 465 ILE A 110 REMARK 465 PRO A 111 REMARK 465 GLU A 112 REMARK 465 CYS A 113 REMARK 465 GLN A 114 REMARK 465 GLY A 115 REMARK 465 LYS A 116 REMARK 465 GLN A 117 REMARK 465 THR A 118 REMARK 465 PRO A 119 REMARK 465 GLU A 120 REMARK 465 LYS A 121 REMARK 465 ASP A 122 REMARK 465 LYS A 123 REMARK 465 CYS A 124 REMARK 465 TYR A 125 REMARK 465 ARG A 126 REMARK 465 ASP A 127 REMARK 465 ASP A 128 REMARK 465 ASN A 129 REMARK 465 THR A 130 REMARK 465 ALA A 131 REMARK 465 SER A 132 REMARK 465 ARG A 133 REMARK 465 LEU A 388 REMARK 465 HIS A 389 REMARK 465 ALA A 390 REMARK 465 VAL A 391 REMARK 465 SER A 392 REMARK 465 GLU A 507 REMARK 465 TYR A 508 REMARK 465 ARG A 509 REMARK 465 ASN A 510 REMARK 465 ARG A 511 REMARK 465 PHE A 512 REMARK 465 LEU A 513 REMARK 465 HIS A 514 REMARK 465 MET A 515 REMARK 465 THR A 516 REMARK 465 GLU A 517 REMARK 465 LEU A 518 REMARK 465 GLN A 519 REMARK 465 GLU A 520 REMARK 465 TRP A 521 REMARK 465 ARG A 522 REMARK 465 ILE A 523 REMARK 465 TYR A 524 REMARK 465 ARG A 525 REMARK 465 ASP A 526 REMARK 465 LYS A 527 REMARK 465 LEU A 528 REMARK 465 ASP B 34 REMARK 465 ARG B 35 REMARK 465 HIS B 36 REMARK 465 HIS B 37 REMARK 465 HIS B 38 REMARK 465 HIS B 39 REMARK 465 HIS B 40 REMARK 465 HIS B 41 REMARK 465 LYS B 102 REMARK 465 ARG B 103 REMARK 465 SER B 104 REMARK 465 LYS B 105 REMARK 465 ARG B 106 REMARK 465 ASP B 107 REMARK 465 PRO B 108 REMARK 465 LEU B 109 REMARK 465 ILE B 110 REMARK 465 PRO B 111 REMARK 465 GLU B 112 REMARK 465 CYS B 113 REMARK 465 GLN B 114 REMARK 465 GLY B 115 REMARK 465 LYS B 116 REMARK 465 GLN B 117 REMARK 465 THR B 118 REMARK 465 PRO B 119 REMARK 465 GLU B 120 REMARK 465 LYS B 121 REMARK 465 ASP B 122 REMARK 465 LYS B 123 REMARK 465 CYS B 124 REMARK 465 TYR B 125 REMARK 465 ARG B 126 REMARK 465 ASP B 127 REMARK 465 ASP B 128 REMARK 465 ASN B 129 REMARK 465 THR B 130 REMARK 465 ALA B 131 REMARK 465 SER B 132 REMARK 465 ARG B 133 REMARK 465 PHE B 134 REMARK 465 GLU B 135 REMARK 465 LEU B 388 REMARK 465 HIS B 389 REMARK 465 ALA B 390 REMARK 465 VAL B 391 REMARK 465 ASP B 526 REMARK 465 LYS B 527 REMARK 465 LEU B 528 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER B 254 O ASP B 310 1.53 REMARK 500 OD2 ASP A 81 HH21 ARG A 155 1.55 REMARK 500 HZ1 LYS A 299 OE1 GLU A 309 1.56 REMARK 500 O GLN B 312 HG SER B 316 1.57 REMARK 500 OD1 ASP B 52 H HIS B 55 1.58 REMARK 500 HH TYR A 142 OE1 GLU A 493 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 309 39.04 -99.61 REMARK 500 PHE A 313 -70.35 -54.69 REMARK 500 ARG A 447 -143.68 -98.10 REMARK 500 PRO A 505 107.46 -54.47 REMARK 500 GLU B 44 146.61 -179.47 REMARK 500 PHE B 293 65.46 -119.68 REMARK 500 ARG B 447 -150.50 -94.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 604 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 338 OD1 REMARK 620 2 ASP A 340 OD1 72.3 REMARK 620 3 ASP A 340 OD2 117.9 50.4 REMARK 620 4 SER A 342 OG 84.0 71.5 59.2 REMARK 620 5 VAL A 344 O 88.0 140.8 120.2 73.1 REMARK 620 6 GLU A 349 OE1 92.7 112.6 127.1 173.7 101.6 REMARK 620 7 GLU A 349 OE2 101.9 70.4 81.7 137.3 148.4 48.6 REMARK 620 8 HOH A 701 O 165.3 93.4 47.5 88.1 101.5 96.3 75.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 603 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 338 OD1 REMARK 620 2 ASP B 340 OD1 72.5 REMARK 620 3 ASP B 340 OD2 116.6 48.1 REMARK 620 4 SER B 342 OG 79.1 71.5 64.5 REMARK 620 5 VAL B 344 O 87.5 140.6 122.8 71.6 REMARK 620 6 GLU B 349 OE1 91.4 122.7 135.1 160.0 90.6 REMARK 620 7 GLU B 349 OE2 98.3 75.7 87.9 146.3 142.1 52.1 REMARK 620 8 HOH B 709 O 160.5 101.7 53.8 81.4 85.9 106.9 98.2 REMARK 620 N 1 2 3 4 5 6 7 DBREF 7S6N A 34 248 PDB 7S6N 7S6N 34 248 DBREF 7S6N A 249 528 UNP Q5RGJ8 GNPTA_DANRE 894 1173 DBREF 7S6N B 34 248 PDB 7S6N 7S6N 34 248 DBREF 7S6N B 249 528 UNP Q5RGJ8 GNPTA_DANRE 894 1173 SEQRES 1 A 495 ASP ARG HIS HIS HIS HIS HIS HIS GLY SER GLU VAL VAL SEQRES 2 A 495 VAL GLU TRP SER ARG ASP GLN TYR HIS VAL LEU PHE ASP SEQRES 3 A 495 SER TYR ARG ASP ASN VAL ALA GLY LYS SER PHE GLN THR SEQRES 4 A 495 ARG LEU CYS LEU PRO MET PRO ILE ASP VAL VAL TYR THR SEQRES 5 A 495 TRP VAL ASN GLY THR ASP PRO LYS LEU ILE LYS GLU VAL SEQRES 6 A 495 THR GLU LEU LYS ARG SER LYS ARG ASP PRO LEU ILE PRO SEQRES 7 A 495 GLU CYS GLN GLY LYS GLN THR PRO GLU LYS ASP LYS CYS SEQRES 8 A 495 TYR ARG ASP ASP ASN THR ALA SER ARG PHE GLU ASP ASN SEQRES 9 A 495 GLU GLU LEU ARG TYR SER LEU ARG SER ILE GLU LYS HIS SEQRES 10 A 495 ALA PRO TRP VAL ARG HIS ILE PHE ILE VAL THR ASN GLY SEQRES 11 A 495 GLN ILE PRO SER TRP LEU ASN LEU ASP ASN PRO ARG VAL SEQRES 12 A 495 SER VAL VAL THR HIS GLN ASP ILE PHE GLN ASN GLN THR SEQRES 13 A 495 HIS LEU PRO THR PHE SER SER PRO ALA ILE GLU THR HIS SEQRES 14 A 495 ILE HIS ARG ILE PRO GLY LEU SER GLN LYS PHE ILE TYR SEQRES 15 A 495 LEU ASN ASP ASP VAL MET PHE GLY LYS ASP VAL TRP PRO SEQRES 16 A 495 ASP ASP PHE TYR SER HIS SER LYS GLY GLN LYS VAL TYR SEQRES 17 A 495 LEU THR TRP PRO VAL PRO ASN ASP THR PHE ALA ASP SER SEQRES 18 A 495 LEU ARG TYR VAL ASN ARG LEU LEU ASN ALA GLN PHE GLY SEQRES 19 A 495 PHE THR SER ARG LYS VAL PRO ALA HIS MET PRO HIS MET SEQRES 20 A 495 ILE ASP ARG LEU ILE MET GLN GLU LEU GLN ASP THR PHE SEQRES 21 A 495 PRO GLN GLU PHE ASP LYS THR SER SER HIS ARG VAL ARG SEQRES 22 A 495 HIS SER GLU ASP MET GLN PHE ALA PHE SER TYR PHE TYR SEQRES 23 A 495 PHE LEU MET SER ALA VAL GLN GLN LEU ASN ILE SER GLU SEQRES 24 A 495 VAL PHE ASP GLU ILE ASP THR ASP HIS SER GLY VAL LEU SEQRES 25 A 495 SER ASP ARG GLU ILE ARG THR LEU ALA THR ARG ILE HIS SEQRES 26 A 495 GLU LEU PRO LEU SER LEU GLN ASP LEU THR SER LEU GLU SEQRES 27 A 495 GLN MET LEU ILE ASN CYS SER LYS SER LEU PRO SER ASN SEQRES 28 A 495 LEU THR HIS LEU HIS ALA VAL SER PRO THR GLN GLU ALA SEQRES 29 A 495 TYR TYR ASP PRO SER MET PRO PRO VAL THR LYS GLY LEU SEQRES 30 A 495 VAL ILE HIS CYS LYS PRO ILE THR GLU ARG ILE HIS LYS SEQRES 31 A 495 ALA PHE LYS ASP GLN ASN LYS TYR LYS PHE GLU ILE MET SEQRES 32 A 495 GLY GLU GLU GLU ILE ALA PHE LYS MET ILE ARG THR ASN SEQRES 33 A 495 VAL SER HIS VAL VAL GLY GLN LEU ASP ASP ILE ARG LYS SEQRES 34 A 495 ASN PRO ARG LYS PHE ILE CYS LEU ASN ASP ASN ILE ASP SEQRES 35 A 495 HIS ILE HIS LYS ASP ALA GLY THR VAL LYS ALA VAL LEU SEQRES 36 A 495 ARG ASP PHE TYR GLU SER MET PHE PRO LEU PRO SER GLN SEQRES 37 A 495 PHE GLU LEU PRO ARG GLU TYR ARG ASN ARG PHE LEU HIS SEQRES 38 A 495 MET THR GLU LEU GLN GLU TRP ARG ILE TYR ARG ASP LYS SEQRES 39 A 495 LEU SEQRES 1 B 495 ASP ARG HIS HIS HIS HIS HIS HIS GLY SER GLU VAL VAL SEQRES 2 B 495 VAL GLU TRP SER ARG ASP GLN TYR HIS VAL LEU PHE ASP SEQRES 3 B 495 SER TYR ARG ASP ASN VAL ALA GLY LYS SER PHE GLN THR SEQRES 4 B 495 ARG LEU CYS LEU PRO MET PRO ILE ASP VAL VAL TYR THR SEQRES 5 B 495 TRP VAL ASN GLY THR ASP PRO LYS LEU ILE LYS GLU VAL SEQRES 6 B 495 THR GLU LEU LYS ARG SER LYS ARG ASP PRO LEU ILE PRO SEQRES 7 B 495 GLU CYS GLN GLY LYS GLN THR PRO GLU LYS ASP LYS CYS SEQRES 8 B 495 TYR ARG ASP ASP ASN THR ALA SER ARG PHE GLU ASP ASN SEQRES 9 B 495 GLU GLU LEU ARG TYR SER LEU ARG SER ILE GLU LYS HIS SEQRES 10 B 495 ALA PRO TRP VAL ARG HIS ILE PHE ILE VAL THR ASN GLY SEQRES 11 B 495 GLN ILE PRO SER TRP LEU ASN LEU ASP ASN PRO ARG VAL SEQRES 12 B 495 SER VAL VAL THR HIS GLN ASP ILE PHE GLN ASN GLN THR SEQRES 13 B 495 HIS LEU PRO THR PHE SER SER PRO ALA ILE GLU THR HIS SEQRES 14 B 495 ILE HIS ARG ILE PRO GLY LEU SER GLN LYS PHE ILE TYR SEQRES 15 B 495 LEU ASN ASP ASP VAL MET PHE GLY LYS ASP VAL TRP PRO SEQRES 16 B 495 ASP ASP PHE TYR SER HIS SER LYS GLY GLN LYS VAL TYR SEQRES 17 B 495 LEU THR TRP PRO VAL PRO ASN ASP THR PHE ALA ASP SER SEQRES 18 B 495 LEU ARG TYR VAL ASN ARG LEU LEU ASN ALA GLN PHE GLY SEQRES 19 B 495 PHE THR SER ARG LYS VAL PRO ALA HIS MET PRO HIS MET SEQRES 20 B 495 ILE ASP ARG LEU ILE MET GLN GLU LEU GLN ASP THR PHE SEQRES 21 B 495 PRO GLN GLU PHE ASP LYS THR SER SER HIS ARG VAL ARG SEQRES 22 B 495 HIS SER GLU ASP MET GLN PHE ALA PHE SER TYR PHE TYR SEQRES 23 B 495 PHE LEU MET SER ALA VAL GLN GLN LEU ASN ILE SER GLU SEQRES 24 B 495 VAL PHE ASP GLU ILE ASP THR ASP HIS SER GLY VAL LEU SEQRES 25 B 495 SER ASP ARG GLU ILE ARG THR LEU ALA THR ARG ILE HIS SEQRES 26 B 495 GLU LEU PRO LEU SER LEU GLN ASP LEU THR SER LEU GLU SEQRES 27 B 495 GLN MET LEU ILE ASN CYS SER LYS SER LEU PRO SER ASN SEQRES 28 B 495 LEU THR HIS LEU HIS ALA VAL SER PRO THR GLN GLU ALA SEQRES 29 B 495 TYR TYR ASP PRO SER MET PRO PRO VAL THR LYS GLY LEU SEQRES 30 B 495 VAL ILE HIS CYS LYS PRO ILE THR GLU ARG ILE HIS LYS SEQRES 31 B 495 ALA PHE LYS ASP GLN ASN LYS TYR LYS PHE GLU ILE MET SEQRES 32 B 495 GLY GLU GLU GLU ILE ALA PHE LYS MET ILE ARG THR ASN SEQRES 33 B 495 VAL SER HIS VAL VAL GLY GLN LEU ASP ASP ILE ARG LYS SEQRES 34 B 495 ASN PRO ARG LYS PHE ILE CYS LEU ASN ASP ASN ILE ASP SEQRES 35 B 495 HIS ILE HIS LYS ASP ALA GLY THR VAL LYS ALA VAL LEU SEQRES 36 B 495 ARG ASP PHE TYR GLU SER MET PHE PRO LEU PRO SER GLN SEQRES 37 B 495 PHE GLU LEU PRO ARG GLU TYR ARG ASN ARG PHE LEU HIS SEQRES 38 B 495 MET THR GLU LEU GLN GLU TRP ARG ILE TYR ARG ASP LYS SEQRES 39 B 495 LEU HET NAG C 1 22 HET NAG C 2 22 HET BMA C 3 17 HET MAN C 4 19 HET NAG D 1 21 HET FUC D 2 18 HET NAG E 1 22 HET NAG E 2 22 HET BMA E 3 17 HET NAG F 1 21 HET NAG F 2 22 HET FUC F 3 18 HET NAG A 601 22 HET NAG A 602 22 HET NAG A 603 22 HET CA A 604 1 HET NAG B 601 22 HET NAG B 602 22 HET CA B 603 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM CA CALCIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 3 NAG 12(C8 H15 N O6) FORMUL 3 BMA 2(C6 H12 O6) FORMUL 3 MAN C6 H12 O6 FORMUL 4 FUC 2(C6 H12 O5) FORMUL 10 CA 2(CA 2+) FORMUL 14 HOH *378(H2 O) HELIX 1 AA1 ASP A 52 TYR A 61 1 10 HELIX 2 AA2 PHE A 70 CYS A 75 1 6 HELIX 3 AA3 ASP A 91 LYS A 105 1 15 HELIX 4 AA4 GLU A 138 ALA A 151 1 14 HELIX 5 AA5 HIS A 181 PHE A 185 1 5 HELIX 6 AA6 ASN A 187 LEU A 191 5 5 HELIX 7 AA7 SER A 195 THR A 201 1 7 HELIX 8 AA8 HIS A 202 ILE A 206 5 5 HELIX 9 AA9 TRP A 227 ASP A 230 5 4 HELIX 10 AB1 PHE A 251 GLY A 267 1 17 HELIX 11 AB2 ARG A 283 PHE A 293 1 11 HELIX 12 AB3 PHE A 293 HIS A 303 1 11 HELIX 13 AB4 GLN A 312 ALA A 324 1 13 HELIX 14 AB5 ASN A 329 ASP A 338 1 10 HELIX 15 AB6 SER A 346 HIS A 358 1 13 HELIX 16 AB7 SER A 363 LEU A 381 1 19 HELIX 17 AB8 PRO A 382 HIS A 387 1 6 HELIX 18 AB9 LYS A 408 CYS A 414 1 7 HELIX 19 AC1 CYS A 414 PHE A 425 1 12 HELIX 20 AC2 ASN A 449 ASN A 463 1 15 HELIX 21 AC3 ASP A 480 PHE A 496 1 17 HELIX 22 AC4 ASP B 52 ARG B 62 1 11 HELIX 23 AC5 PHE B 70 CYS B 75 1 6 HELIX 24 AC6 ASP B 91 LEU B 101 1 11 HELIX 25 AC7 GLU B 138 ALA B 151 1 14 HELIX 26 AC8 HIS B 181 PHE B 185 1 5 HELIX 27 AC9 ASN B 187 LEU B 191 5 5 HELIX 28 AD1 SER B 195 THR B 201 1 7 HELIX 29 AD2 HIS B 202 ILE B 206 5 5 HELIX 30 AD3 TRP B 227 ASP B 230 5 4 HELIX 31 AD4 PHE B 251 GLY B 267 1 17 HELIX 32 AD5 ARG B 283 PHE B 293 1 11 HELIX 33 AD6 PHE B 293 HIS B 303 1 11 HELIX 34 AD7 GLN B 312 ALA B 324 1 13 HELIX 35 AD8 ASN B 329 ASP B 338 1 10 HELIX 36 AD9 SER B 346 HIS B 358 1 13 HELIX 37 AE1 SER B 363 LEU B 381 1 19 HELIX 38 AE2 PRO B 382 HIS B 387 1 6 HELIX 39 AE3 LYS B 408 CYS B 414 1 7 HELIX 40 AE4 CYS B 414 PHE B 425 1 12 HELIX 41 AE5 ASN B 449 ASN B 463 1 15 HELIX 42 AE6 ASP B 480 PHE B 496 1 17 HELIX 43 AE7 HIS B 514 ARG B 525 1 12 SHEET 1 AA1 5 VAL A 176 THR A 180 0 SHEET 2 AA1 5 ILE A 157 THR A 161 1 N ILE A 159 O SER A 177 SHEET 3 AA1 5 ASP A 81 THR A 85 1 N TYR A 84 O VAL A 160 SHEET 4 AA1 5 LYS A 212 ASN A 217 1 O LEU A 216 N VAL A 83 SHEET 5 AA1 5 HIS A 279 ASP A 282 -1 O HIS A 279 N TYR A 215 SHEET 1 AA2 3 VAL A 220 PHE A 222 0 SHEET 2 AA2 3 PHE A 467 ASP A 472 -1 O ILE A 468 N MET A 221 SHEET 3 AA2 3 ILE A 441 ILE A 446 1 N ALA A 442 O PHE A 467 SHEET 1 AA3 3 TYR A 232 SER A 233 0 SHEET 2 AA3 3 GLY A 237 THR A 243 -1 O GLY A 237 N SER A 233 SHEET 3 AA3 3 VAL A 273 PRO A 274 -1 O VAL A 273 N THR A 243 SHEET 1 AA4 3 TYR A 232 SER A 233 0 SHEET 2 AA4 3 GLY A 237 THR A 243 -1 O GLY A 237 N SER A 233 SHEET 3 AA4 3 PHE A 433 MET A 436 1 O GLU A 434 N VAL A 240 SHEET 1 AA5 2 VAL A 325 GLN A 326 0 SHEET 2 AA5 2 GLN A 428 ASN A 429 -1 O GLN A 428 N GLN A 326 SHEET 1 AA6 2 VAL A 344 LEU A 345 0 SHEET 2 AA6 2 VAL A 406 THR A 407 -1 O VAL A 406 N LEU A 345 SHEET 1 AA7 5 VAL B 176 THR B 180 0 SHEET 2 AA7 5 ILE B 157 THR B 161 1 N ILE B 159 O VAL B 179 SHEET 3 AA7 5 ILE B 80 THR B 85 1 N VAL B 82 O PHE B 158 SHEET 4 AA7 5 LYS B 212 ASN B 217 1 O ILE B 214 N VAL B 83 SHEET 5 AA7 5 HIS B 279 ASP B 282 -1 O HIS B 279 N TYR B 215 SHEET 1 AA8 3 VAL B 220 PHE B 222 0 SHEET 2 AA8 3 PHE B 467 ASP B 472 -1 O ILE B 468 N MET B 221 SHEET 3 AA8 3 ILE B 441 ILE B 446 1 N ILE B 446 O ASN B 471 SHEET 1 AA9 3 TYR B 232 SER B 233 0 SHEET 2 AA9 3 GLY B 237 THR B 243 -1 O GLY B 237 N SER B 233 SHEET 3 AA9 3 VAL B 273 PRO B 274 -1 O VAL B 273 N THR B 243 SHEET 1 AB1 3 TYR B 232 SER B 233 0 SHEET 2 AB1 3 GLY B 237 THR B 243 -1 O GLY B 237 N SER B 233 SHEET 3 AB1 3 PHE B 433 MET B 436 1 O GLU B 434 N VAL B 240 SHEET 1 AB2 2 VAL B 325 GLN B 326 0 SHEET 2 AB2 2 GLN B 428 ASN B 429 -1 O GLN B 428 N GLN B 326 SHEET 1 AB3 2 VAL B 344 LEU B 345 0 SHEET 2 AB3 2 VAL B 406 THR B 407 -1 O VAL B 406 N LEU B 345 SSBOND 1 CYS A 75 CYS B 75 1555 1555 2.03 SSBOND 2 CYS A 377 CYS A 414 1555 1555 2.03 SSBOND 3 CYS B 377 CYS B 414 1555 1555 2.04 LINK ND2 ASN A 88 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN A 187 C1 NAG D 1 1555 1555 1.44 LINK ND2 ASN A 329 C1 NAG A 602 1555 1555 1.44 LINK ND2 ASN A 376 C1 NAG A 601 1555 1555 1.45 LINK ND2 ASN A 449 C1 NAG A 603 1555 1555 1.45 LINK ND2 ASN B 88 C1 NAG E 1 1555 1555 1.44 LINK ND2 ASN B 187 C1 NAG F 1 1555 1555 1.44 LINK ND2 ASN B 329 C1 NAG B 601 1555 1555 1.45 LINK ND2 ASN B 449 C1 NAG B 602 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.43 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.44 LINK O3 BMA C 3 C1 MAN C 4 1555 1555 1.44 LINK O6 NAG D 1 C1 FUC D 2 1555 1555 1.45 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.44 LINK O4 NAG E 2 C1 BMA E 3 1555 1555 1.45 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.44 LINK O6 NAG F 1 C1 FUC F 3 1555 1555 1.44 LINK OD1 ASP A 338 CA CA A 604 1555 1555 2.35 LINK OD1 ASP A 340 CA CA A 604 1555 1555 2.31 LINK OD2 ASP A 340 CA CA A 604 1555 1555 2.73 LINK OG SER A 342 CA CA A 604 1555 1555 2.76 LINK O VAL A 344 CA CA A 604 1555 1555 2.22 LINK OE1 GLU A 349 CA CA A 604 1555 1555 2.32 LINK OE2 GLU A 349 CA CA A 604 1555 1555 2.92 LINK CA CA A 604 O HOH A 701 1555 1555 2.74 LINK OD1 ASP B 338 CA CA B 603 1555 1555 2.40 LINK OD1 ASP B 340 CA CA B 603 1555 1555 2.27 LINK OD2 ASP B 340 CA CA B 603 1555 1555 2.91 LINK OG SER B 342 CA CA B 603 1555 1555 2.62 LINK O VAL B 344 CA CA B 603 1555 1555 2.50 LINK OE1 GLU B 349 CA CA B 603 1555 1555 2.30 LINK OE2 GLU B 349 CA CA B 603 1555 1555 2.61 LINK CA CA B 603 O HOH B 709 1555 1555 2.55 CISPEP 1 MET A 78 PRO A 79 0 1.70 CISPEP 2 LEU A 191 PRO A 192 0 0.53 CISPEP 3 LEU A 360 PRO A 361 0 0.04 CISPEP 4 MET B 78 PRO B 79 0 3.13 CISPEP 5 LEU B 191 PRO B 192 0 -0.73 CISPEP 6 LEU B 360 PRO B 361 0 3.24 CRYST1 97.182 86.605 106.985 90.00 112.17 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010290 0.000000 0.004193 0.00000 SCALE2 0.000000 0.011547 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010093 0.00000