HEADER DNA 29-SEP-21 7SDF TITLE [C:AG+:S] METAL-MEDIATED DNA BASE PAIR IN A SELF-ASSEMBLING TITLE 2 RHOMBOHEDRAL LATTICE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*CP*TP*GP*GP*AP*CP*AP*TP*CP*A)- COMPND 4 3'); COMPND 5 CHAIN: A; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(P*CP*CP*AP*(IMC)P*AP*CP*A)-3'); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'-D(P*GP*GP*CP*TP*GP*CP*T)-3'); COMPND 13 CHAIN: C; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'); COMPND 17 CHAIN: D; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 8 ORGANISM_TAXID: 32630; SOURCE 9 MOL_ID: 3; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630; SOURCE 13 MOL_ID: 4; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 16 ORGANISM_TAXID: 32630 KEYWDS TENSEGRITY TRIANGLE, SELF-ASSEMBLING CRYSTAL, METAL-MEDIATED KEYWDS 2 MISMATCH, DNA EXPDTA X-RAY DIFFRACTION AUTHOR S.VECCHIONI,B.LU,N.C.SEEMAN,R.SHA,Y.P.OHAYON REVDAT 3 22-MAY-24 7SDF 1 REMARK REVDAT 2 19-APR-23 7SDF 1 JRNL REVDAT 1 05-OCT-22 7SDF 0 JRNL AUTH S.VECCHIONI,B.LU,W.LIVERNOIS,Y.P.OHAYON,J.B.YODER,C.F.YANG, JRNL AUTH 2 K.WOLOSZYN,W.BERNFELD,M.P.ANANTRAM,J.W.CANARY, JRNL AUTH 3 W.A.HENDRICKSON,L.J.ROTHSCHILD,C.MAO,S.J.WIND,N.C.SEEMAN, JRNL AUTH 4 R.SHA JRNL TITL METAL-MEDIATED DNA NANOTECHNOLOGY IN 3D: STRUCTURAL LIBRARY JRNL TITL 2 BY TEMPLATED DIFFRACTION. JRNL REF ADV MATER 01938 2023 JRNL REFN ISSN 1521-4095 JRNL PMID 36939292 JRNL DOI 10.1002/ADMA.202201938 REMARK 2 REMARK 2 RESOLUTION. 3.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 64.3 REMARK 3 NUMBER OF REFLECTIONS : 3259 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.080 REMARK 3 FREE R VALUE TEST SET COUNT : 198 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.6300 - 3.4600 0.64 3061 198 0.1718 0.2185 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.171 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.991 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 214.9 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 221.3 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 957 REMARK 3 ANGLE : 0.906 1469 REMARK 3 CHIRALITY : 0.044 166 REMARK 3 PLANARITY : 0.005 42 REMARK 3 DIHEDRAL : 37.404 403 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 1 THROUGH 21) REMARK 3 ORIGIN FOR THE GROUP (A): 10.2160 11.3965 -23.7089 REMARK 3 T TENSOR REMARK 3 T11: 2.4196 T22: 2.9434 REMARK 3 T33: 2.2827 T12: 0.4585 REMARK 3 T13: 0.4562 T23: -0.2151 REMARK 3 L TENSOR REMARK 3 L11: 2.8353 L22: 3.7137 REMARK 3 L33: -1.1329 L12: 0.9805 REMARK 3 L13: -3.0437 L23: 0.7442 REMARK 3 S TENSOR REMARK 3 S11: 1.3240 S12: -0.1207 S13: 0.7392 REMARK 3 S21: -1.0615 S22: -0.0665 S23: -1.1993 REMARK 3 S31: -0.4969 S32: -0.0611 S33: -0.0073 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 1 THROUGH 7) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3001 12.1536 -22.2693 REMARK 3 T TENSOR REMARK 3 T11: 1.9142 T22: 2.0657 REMARK 3 T33: 1.8142 T12: 0.0756 REMARK 3 T13: 0.5758 T23: -0.2822 REMARK 3 L TENSOR REMARK 3 L11: 2.6591 L22: 0.4451 REMARK 3 L33: -0.4605 L12: -0.1933 REMARK 3 L13: 0.3141 L23: 0.3187 REMARK 3 S TENSOR REMARK 3 S11: 2.4842 S12: -0.6025 S13: 3.2506 REMARK 3 S21: -0.1477 S22: -0.2121 S23: 0.4803 REMARK 3 S31: -0.6605 S32: 0.8729 S33: 0.0201 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 8 THROUGH 14) REMARK 3 ORIGIN FOR THE GROUP (A): 26.0323 4.4247 -35.6169 REMARK 3 T TENSOR REMARK 3 T11: 2.2249 T22: 2.2881 REMARK 3 T33: 2.6464 T12: 0.3079 REMARK 3 T13: 0.8765 T23: -0.5179 REMARK 3 L TENSOR REMARK 3 L11: 0.7908 L22: 2.5031 REMARK 3 L33: 5.1346 L12: 0.3090 REMARK 3 L13: 0.6720 L23: -3.2189 REMARK 3 S TENSOR REMARK 3 S11: 2.7872 S12: 0.1994 S13: 2.6340 REMARK 3 S21: -0.5416 S22: 0.5112 S23: 0.4372 REMARK 3 S31: -0.5422 S32: -0.8407 S33: 0.7017 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 1 THROUGH 7) REMARK 3 ORIGIN FOR THE GROUP (A): -10.3715 21.2637 -8.5962 REMARK 3 T TENSOR REMARK 3 T11: 2.2187 T22: 3.2150 REMARK 3 T33: 2.3811 T12: 0.4468 REMARK 3 T13: 1.0246 T23: 0.2735 REMARK 3 L TENSOR REMARK 3 L11: 0.6007 L22: 3.1976 REMARK 3 L33: 1.3049 L12: -0.5914 REMARK 3 L13: 0.4771 L23: -0.8614 REMARK 3 S TENSOR REMARK 3 S11: 0.0363 S12: -3.8247 S13: -0.1857 REMARK 3 S21: 0.7491 S22: -0.6965 S23: 0.8570 REMARK 3 S31: -0.8198 S32: -0.2125 S33: 0.5221 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7SDF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-OCT-21. REMARK 100 THE DEPOSITION ID IS D_1000259461. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00743 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 3296 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.460 REMARK 200 RESOLUTION RANGE LOW (A) : 65.265 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.0 REMARK 200 DATA REDUNDANCY : 10.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.46 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 44.7 REMARK 200 DATA REDUNDANCY IN SHELL : 10.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: RHOMBOHEDRAL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 8.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MOPS, MAGNESIUM SULFATE, SILVER REMARK 280 NITRATE, PH 7.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 53.08650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.64951 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 30.88433 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 53.08650 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 30.64951 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 30.88433 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 53.08650 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 30.64951 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 30.88433 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 61.29901 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 61.76867 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 61.29901 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 61.76867 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 61.29901 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 61.76867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N3 IMC B 4 AG AG B 101 1.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O6 DG A 1 N4 DC D 1 7544 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC D 1 P DC D 1 OP3 -0.126 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA A 2 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DC A 7 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 DT A 11 O4' - C1' - N1 ANGL. DEV. = 4.1 DEGREES REMARK 500 DC A 12 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DA B 7 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 DC D 1 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DG D 3 C3' - C2' - C1' ANGL. DEV. = -5.7 DEGREES REMARK 500 DG D 3 O4' - C1' - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG B 101 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC A 12 N3 REMARK 620 2 DC A 12 N4 56.4 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7SD6 RELATED DB: PDB REMARK 900 7SD6 CONTAINS A DIFFERENT BASE PAIR IN THE SAME MOTIF. DBREF 7SDF A 1 21 PDB 7SDF 7SDF 1 21 DBREF 7SDF B 1 7 PDB 7SDF 7SDF 1 7 DBREF 7SDF C 8 14 PDB 7SDF 7SDF 8 14 DBREF 7SDF D 1 7 PDB 7SDF 7SDF 1 7 SEQRES 1 A 21 DG DA DG DC DA DG DC DC DT DG DT DC DT SEQRES 2 A 21 DG DG DA DC DA DT DC DA SEQRES 1 B 7 DC DC DA IMC DA DC DA SEQRES 1 C 7 DG DG DC DT DG DC DT SEQRES 1 D 7 DC DT DG DA DT DG DT HET IMC B 4 33 HET AG B 101 1 HETNAM IMC N1-[2-DEOXY-RIBOFURANOSYL]-[2-AMINO-5-METHYL-4-OXO-4H- HETNAM 2 IMC PYRIMIDINE]-5'-MONOPHOSPHATE HETNAM AG SILVER ION FORMUL 2 IMC C10 H16 N3 O7 P FORMUL 5 AG AG 1+ LINK O3' DA B 3 P IMC B 4 1555 1555 1.60 LINK O3' IMC B 4 P DA B 5 1555 1555 1.61 LINK N3 DC A 12 AG AG B 101 1555 1555 2.00 LINK N4 DC A 12 AG AG B 101 1555 1555 2.69 CRYST1 106.173 106.173 92.653 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009419 0.005438 0.000000 0.00000 SCALE2 0.000000 0.010876 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010793 0.00000