HEADER DNA 29-SEP-21 7SDK TITLE [MC:AG+:S] METAL-MEDIATED DNA BASE PAIR IN A SELF-ASSEMBLING TITLE 2 RHOMBOHEDRAL LATTICE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*(5CM) COMPND 3 P*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'); COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(P*CP*CP*AP*(IMC)P*AP*CP*A)-3'); COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (5'-D(P*GP*GP*CP*TP*GP*CP*T)-3'); COMPND 12 CHAIN: C; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 4; COMPND 15 MOLECULE: DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'); COMPND 16 CHAIN: D; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 8 ORGANISM_TAXID: 32630; SOURCE 9 MOL_ID: 3; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630; SOURCE 13 MOL_ID: 4; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 16 ORGANISM_TAXID: 32630 KEYWDS TENSEGRITY TRIANGLE, SELF-ASSEMBLING CRYSTAL, METAL-MEDIATED KEYWDS 2 MISMATCH, DNA EXPDTA X-RAY DIFFRACTION AUTHOR B.LU,S.VECCHIONI,N.C.SEEMAN,R.SHA,Y.P.OHAYON REVDAT 3 22-MAY-24 7SDK 1 REMARK REVDAT 2 19-APR-23 7SDK 1 JRNL REVDAT 1 05-OCT-22 7SDK 0 JRNL AUTH S.VECCHIONI,B.LU,W.LIVERNOIS,Y.P.OHAYON,J.B.YODER,C.F.YANG, JRNL AUTH 2 K.WOLOSZYN,W.BERNFELD,M.P.ANANTRAM,J.W.CANARY, JRNL AUTH 3 W.A.HENDRICKSON,L.J.ROTHSCHILD,C.MAO,S.J.WIND,N.C.SEEMAN, JRNL AUTH 4 R.SHA JRNL TITL METAL-MEDIATED DNA NANOTECHNOLOGY IN 3D: STRUCTURAL LIBRARY JRNL TITL 2 BY TEMPLATED DIFFRACTION. JRNL REF ADV MATER 01938 2023 JRNL REFN ISSN 1521-4095 JRNL PMID 36939292 JRNL DOI 10.1002/ADMA.202201938 REMARK 2 REMARK 2 RESOLUTION. 3.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 65.6 REMARK 3 NUMBER OF REFLECTIONS : 2382 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.450 REMARK 3 FREE R VALUE TEST SET COUNT : 106 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.5500 - 3.8600 0.66 2276 106 0.1918 0.2138 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.000 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 37.925 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 285.2 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 322.4 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 958 REMARK 3 ANGLE : 1.253 1471 REMARK 3 CHIRALITY : 0.053 159 REMARK 3 PLANARITY : 0.005 42 REMARK 3 DIHEDRAL : 36.574 435 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 1 THROUGH 21) REMARK 3 ORIGIN FOR THE GROUP (A): 10.4062 11.0871 -22.8992 REMARK 3 T TENSOR REMARK 3 T11: 2.6688 T22: 3.5188 REMARK 3 T33: 1.5987 T12: 0.9810 REMARK 3 T13: 0.8441 T23: -0.0565 REMARK 3 L TENSOR REMARK 3 L11: 9.8227 L22: 9.5502 REMARK 3 L33: 2.7037 L12: 7.9006 REMARK 3 L13: -3.4199 L23: 3.5451 REMARK 3 S TENSOR REMARK 3 S11: 4.5020 S12: -2.9004 S13: 6.7431 REMARK 3 S21: -3.4531 S22: 1.2156 S23: -5.8621 REMARK 3 S31: -1.7675 S32: 2.4333 S33: -2.4476 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 1 THROUGH 7) REMARK 3 ORIGIN FOR THE GROUP (A): 7.4336 11.9633 -21.5634 REMARK 3 T TENSOR REMARK 3 T11: 2.1579 T22: 2.1265 REMARK 3 T33: 1.6552 T12: -0.2666 REMARK 3 T13: 0.6118 T23: -0.2304 REMARK 3 L TENSOR REMARK 3 L11: 4.4324 L22: 4.0326 REMARK 3 L33: 5.2476 L12: 1.9084 REMARK 3 L13: 0.9961 L23: 4.7344 REMARK 3 S TENSOR REMARK 3 S11: 2.0177 S12: -3.1221 S13: 2.7301 REMARK 3 S21: 0.2110 S22: 0.6568 S23: -1.1466 REMARK 3 S31: -0.7066 S32: 2.3114 S33: -1.6926 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 8 THROUGH 14) REMARK 3 ORIGIN FOR THE GROUP (A): 26.3034 4.2709 -34.8218 REMARK 3 T TENSOR REMARK 3 T11: 2.8965 T22: 2.8178 REMARK 3 T33: 5.5705 T12: 0.1550 REMARK 3 T13: 0.6973 T23: -0.9129 REMARK 3 L TENSOR REMARK 3 L11: 1.7171 L22: 6.5411 REMARK 3 L33: 9.5655 L12: -0.8685 REMARK 3 L13: 1.8388 L23: -0.3919 REMARK 3 S TENSOR REMARK 3 S11: 3.3195 S12: -2.7811 S13: 7.9280 REMARK 3 S21: -4.1002 S22: 3.0404 S23: -0.8634 REMARK 3 S31: -2.6720 S32: 1.3197 S33: -4.6193 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 1 THROUGH 7) REMARK 3 ORIGIN FOR THE GROUP (A): -10.2291 20.7257 -7.7466 REMARK 3 T TENSOR REMARK 3 T11: 3.0889 T22: 3.3533 REMARK 3 T33: 3.4483 T12: 1.3799 REMARK 3 T13: 1.7873 T23: 0.0550 REMARK 3 L TENSOR REMARK 3 L11: 1.4430 L22: 7.0492 REMARK 3 L33: 5.2187 L12: 7.4554 REMARK 3 L13: -4.4836 L23: -5.3620 REMARK 3 S TENSOR REMARK 3 S11: 0.5926 S12: -14.6330 S13: 0.8303 REMARK 3 S21: 3.4512 S22: -6.8149 S23: -0.7987 REMARK 3 S31: -1.6298 S32: 2.0339 S33: 1.3850 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7SDK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-OCT-21. REMARK 100 THE DEPOSITION ID IS D_1000259431. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00743 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 2473 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.860 REMARK 200 RESOLUTION RANGE LOW (A) : 65.097 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.2 REMARK 200 DATA REDUNDANCY : 10.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 49.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: RHOMBOHEDRAL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 8.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MOPS, MAGNESIUM SULFATE, SILVER REMARK 280 NITRATE, PH 7.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 52.93050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.55944 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 30.81600 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 52.93050 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 30.55944 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 30.81600 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 52.93050 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 30.55944 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 30.81600 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 61.11888 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 61.63200 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 61.11888 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 61.63200 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 61.11888 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 61.63200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC D 1 P DC D 1 OP3 -0.127 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA A 2 O4' - C1' - N9 ANGL. DEV. = 4.9 DEGREES REMARK 500 DC A 7 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DT A 11 O4' - C1' - N1 ANGL. DEV. = 4.7 DEGREES REMARK 500 DT A 13 O3' - P - OP1 ANGL. DEV. = 6.7 DEGREES REMARK 500 DC D 1 O4' - C1' - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 DG D 3 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG B 101 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 5CM A 12 N3 REMARK 620 2 5CM A 12 N4 63.6 REMARK 620 3 IMC B 4 N3 159.5 119.1 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7SD6 RELATED DB: PDB REMARK 900 CONTAINS A DIFFERENT BASE PAIR IN THE SAME MOTIF. DBREF 7SDK A 1 21 PDB 7SDK 7SDK 1 21 DBREF 7SDK B 1 7 PDB 7SDK 7SDK 1 7 DBREF 7SDK C 8 14 PDB 7SDK 7SDK 8 14 DBREF 7SDK D 1 7 PDB 7SDK 7SDK 1 7 SEQRES 1 A 21 DG DA DG DC DA DG DC DC DT DG DT 5CM DT SEQRES 2 A 21 DG DG DA DC DA DT DC DA SEQRES 1 B 7 DC DC DA IMC DA DC DA SEQRES 1 C 7 DG DG DC DT DG DC DT SEQRES 1 D 7 DC DT DG DA DT DG DT HET 5CM A 12 20 HET IMC B 4 20 HET AG B 101 1 HETNAM 5CM 5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE HETNAM IMC N1-[2-DEOXY-RIBOFURANOSYL]-[2-AMINO-5-METHYL-4-OXO-4H- HETNAM 2 IMC PYRIMIDINE]-5'-MONOPHOSPHATE HETNAM AG SILVER ION FORMUL 1 5CM C10 H16 N3 O7 P FORMUL 2 IMC C10 H16 N3 O7 P FORMUL 5 AG AG 1+ LINK O3' DT A 11 P 5CM A 12 1555 1555 1.62 LINK O3' 5CM A 12 P DT A 13 1555 1555 1.61 LINK O3' DA B 3 P IMC B 4 1555 1555 1.61 LINK O3' IMC B 4 P DA B 5 1555 1555 1.61 LINK N3 5CM A 12 AG AG B 101 1555 1555 2.28 LINK N4 5CM A 12 AG AG B 101 1555 1555 2.29 LINK N3 IMC B 4 AG AG B 101 1555 1555 1.98 CRYST1 105.861 105.861 92.448 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009446 0.005454 0.000000 0.00000 SCALE2 0.000000 0.010908 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010817 0.00000