HEADER DNA 29-SEP-21 7SDX TITLE [U:HG2+:MC] METAL-MEDIATED DNA BASE PAIR IN A SELF-ASSEMBLING TITLE 2 RHOMBOHEDRAL LATTICE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*UP*TP*GP*GP*AP*CP*AP*TP*CP*A)- COMPND 4 3'); COMPND 5 CHAIN: A; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(P*CP*CP*AP*(5CM)P*AP*CP*A)-3'); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'-D(P*GP*GP*CP*TP*GP*CP*T)-3'); COMPND 13 CHAIN: C; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'); COMPND 17 CHAIN: D; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 8 ORGANISM_TAXID: 32630; SOURCE 9 MOL_ID: 3; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630; SOURCE 13 MOL_ID: 4; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 16 ORGANISM_TAXID: 32630 KEYWDS TENSEGRITY TRIANGLE, SELF-ASSEMBLING CRYSTAL, METAL-MEDIATED KEYWDS 2 MISMATCH, DNA EXPDTA X-RAY DIFFRACTION AUTHOR B.LU,S.VECCHIONI,N.C.SEEMAN,R.SHA,Y.P.OHAYON REVDAT 3 22-MAY-24 7SDX 1 REMARK REVDAT 2 19-APR-23 7SDX 1 JRNL REVDAT 1 05-OCT-22 7SDX 0 JRNL AUTH S.VECCHIONI,B.LU,W.LIVERNOIS,Y.P.OHAYON,J.B.YODER,C.F.YANG, JRNL AUTH 2 K.WOLOSZYN,W.BERNFELD,M.P.ANANTRAM,J.W.CANARY, JRNL AUTH 3 W.A.HENDRICKSON,L.J.ROTHSCHILD,C.MAO,S.J.WIND,N.C.SEEMAN, JRNL AUTH 4 R.SHA JRNL TITL METAL-MEDIATED DNA NANOTECHNOLOGY IN 3D: STRUCTURAL LIBRARY JRNL TITL 2 BY TEMPLATED DIFFRACTION. JRNL REF ADV MATER 01938 2023 JRNL REFN ISSN 1521-4095 JRNL PMID 36939292 JRNL DOI 10.1002/ADMA.202201938 REMARK 2 REMARK 2 RESOLUTION. 3.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19_4092 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 68.0 REMARK 3 NUMBER OF REFLECTIONS : 2427 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.890 REMARK 3 FREE R VALUE TEST SET COUNT : 240 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.5500 - 4.9000 0.97 1547 170 0.2202 0.2375 REMARK 3 2 4.8900 - 3.8900 0.40 640 70 0.4338 0.4193 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.000 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 46.984 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 260.4 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 279.7 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 957 REMARK 3 ANGLE : 1.230 1469 REMARK 3 CHIRALITY : 0.060 162 REMARK 3 PLANARITY : 0.005 42 REMARK 3 DIHEDRAL : 37.996 417 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 1:21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.418 10.982 -21.937 REMARK 3 T TENSOR REMARK 3 T11: 2.4888 T22: 2.1720 REMARK 3 T33: 2.8056 T12: 0.0347 REMARK 3 T13: 0.2424 T23: -0.2610 REMARK 3 L TENSOR REMARK 3 L11: 3.3735 L22: 3.4624 REMARK 3 L33: 2.2487 L12: -0.7720 REMARK 3 L13: -1.3791 L23: -0.1839 REMARK 3 S TENSOR REMARK 3 S11: 1.7950 S12: 0.5892 S13: 0.8940 REMARK 3 S21: -1.4177 S22: 0.2556 S23: -1.3561 REMARK 3 S31: -0.7796 S32: -0.2073 S33: -1.6512 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN B AND RESID 1:7 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.543 11.816 -20.754 REMARK 3 T TENSOR REMARK 3 T11: 2.5630 T22: 2.6160 REMARK 3 T33: 2.1906 T12: 0.3403 REMARK 3 T13: 0.1518 T23: -0.7009 REMARK 3 L TENSOR REMARK 3 L11: 1.9655 L22: 1.9663 REMARK 3 L33: 4.9220 L12: -6.4478 REMARK 3 L13: 0.2617 L23: -1.4590 REMARK 3 S TENSOR REMARK 3 S11: 1.4778 S12: -0.3582 S13: 0.9025 REMARK 3 S21: 2.3346 S22: 0.0100 S23: -0.7712 REMARK 3 S31: -0.7957 S32: 1.9867 S33: -0.6976 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN C AND RESID 8:14 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.653 4.261 -33.600 REMARK 3 T TENSOR REMARK 3 T11: 2.1633 T22: 2.7767 REMARK 3 T33: 3.2571 T12: 0.3943 REMARK 3 T13: 1.2707 T23: 0.6190 REMARK 3 L TENSOR REMARK 3 L11: 2.0123 L22: 0.4987 REMARK 3 L33: 3.1409 L12: 1.5920 REMARK 3 L13: -4.7948 L23: -0.1782 REMARK 3 S TENSOR REMARK 3 S11: -0.8115 S12: 0.8379 S13: 0.5476 REMARK 3 S21: -1.5387 S22: 1.3748 S23: -1.3112 REMARK 3 S31: -0.9116 S32: -0.3012 S33: 0.0372 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN D AND RESID 1:7 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.476 20.230 -6.873 REMARK 3 T TENSOR REMARK 3 T11: 2.6855 T22: 1.2565 REMARK 3 T33: 1.7736 T12: 1.9160 REMARK 3 T13: 2.3860 T23: -0.5718 REMARK 3 L TENSOR REMARK 3 L11: 4.5525 L22: 5.2212 REMARK 3 L33: 1.9913 L12: -2.4290 REMARK 3 L13: -1.2877 L23: 2.2658 REMARK 3 S TENSOR REMARK 3 S11: -1.6317 S12: -2.0208 S13: -0.1645 REMARK 3 S21: 1.5139 S22: -1.1886 S23: -0.5202 REMARK 3 S31: -1.5586 S32: -0.1520 S33: 0.9391 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7SDX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-OCT-21. REMARK 100 THE DEPOSITION ID IS D_1000259419. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-OCT-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00744 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 2457 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.888 REMARK 200 RESOLUTION RANGE LOW (A) : 64.964 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.2 REMARK 200 DATA REDUNDANCY : 10.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 50.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: RHOMBOHEDRAL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 8.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MOPS, MAGNESIUM SULFATE, MERCURY REMARK 280 CHLORIDE, PH 7.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 53.19000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.70926 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 30.53967 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 53.19000 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 30.70926 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 30.53967 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 53.19000 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 30.70926 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 30.53967 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 61.41852 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 61.07933 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 61.41852 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 61.07933 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 61.41852 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 61.07933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O6 DG A 1 N4 DC D 1 7544 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DU A 12 C5' DU A 12 C4' -0.069 REMARK 500 DU A 12 C4' DU A 12 C3' 0.072 REMARK 500 DU A 12 C3' DU A 12 C2' -0.285 REMARK 500 DU A 12 C2' DU A 12 C1' 0.111 REMARK 500 DU A 12 O4' DU A 12 C1' -0.110 REMARK 500 DU A 12 O3' DU A 12 C3' 0.094 REMARK 500 DU A 12 N1 DU A 12 C2 0.099 REMARK 500 DU A 12 N1 DU A 12 C6 0.091 REMARK 500 DU A 12 C2 DU A 12 N3 0.125 REMARK 500 DU A 12 N3 DU A 12 C4 0.068 REMARK 500 DU A 12 C4 DU A 12 C5 0.068 REMARK 500 DU A 12 C5 DU A 12 C6 0.177 REMARK 500 DC D 1 P DC D 1 OP3 -0.125 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA A 2 O4' - C1' - N9 ANGL. DEV. = 4.8 DEGREES REMARK 500 DT A 11 O4' - C1' - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 DU A 12 C5' - C4' - O4' ANGL. DEV. = 8.5 DEGREES REMARK 500 DU A 12 C4' - C3' - C2' ANGL. DEV. = 6.3 DEGREES REMARK 500 DU A 12 O4' - C1' - N1 ANGL. DEV. = 5.7 DEGREES REMARK 500 DU A 12 C6 - N1 - C2 ANGL. DEV. = -5.7 DEGREES REMARK 500 DU A 12 N1 - C2 - N3 ANGL. DEV. = 8.5 DEGREES REMARK 500 DU A 12 C2 - N3 - C4 ANGL. DEV. = -5.9 DEGREES REMARK 500 DU A 12 N1 - C2 - O2 ANGL. DEV. = -6.3 DEGREES REMARK 500 DA B 7 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DT C 11 N3 - C4 - O4 ANGL. DEV. = 3.6 DEGREES REMARK 500 DC D 1 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DG D 3 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DT D 7 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7SD6 RELATED DB: PDB REMARK 900 CONTAINS A DIFFERENT BASE PAIR IN THE SAME MOTIF. DBREF 7SDX A 1 21 PDB 7SDX 7SDX 1 21 DBREF 7SDX B 1 7 PDB 7SDX 7SDX 1 7 DBREF 7SDX C 8 14 PDB 7SDX 7SDX 8 14 DBREF 7SDX D 1 7 PDB 7SDX 7SDX 1 7 SEQRES 1 A 21 DG DA DG DC DA DG DC DC DT DG DT DU DT SEQRES 2 A 21 DG DG DA DC DA DT DC DA SEQRES 1 B 7 DC DC DA 5CM DA DC DA SEQRES 1 C 7 DG DG DC DT DG DC DT SEQRES 1 D 7 DC DT DG DA DT DG DT HET 5CM B 4 20 HET HG B 101 1 HETNAM 5CM 5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE HETNAM HG MERCURY (II) ION FORMUL 2 5CM C10 H16 N3 O7 P FORMUL 5 HG HG 2+ LINK O3' DA B 3 P 5CM B 4 1555 1555 1.60 LINK O3' 5CM B 4 P DA B 5 1555 1555 1.59 LINK N4 5CM B 4 HG HG B 101 1555 1555 2.23 CRYST1 106.380 106.380 91.619 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009400 0.005427 0.000000 0.00000 SCALE2 0.000000 0.010854 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010915 0.00000