HEADER METAL BINDING PROTEIN 30-SEP-21 7SEK TITLE SOLUTION STRUCTURE OF THE ZINC FINGER DOMAIN OF MURINE METAP1, TITLE 2 COMPLEXED WITH ZNG N-TERMINAL PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: COBW DOMAIN-CONTAINING PROTEIN 1,METHIONINE AMINOPEPTIDASE COMPND 3 1 FUSION; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: COBALAMIN SYNTHASE W DOMAIN-CONTAINING PROTEIN 1,MAP 1,METAP COMPND 6 1,PEPTIDASE M 1; COMPND 7 EC: 3.4.11.18; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CBWD1, METAP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS METALLOCHAPERONE, ZINC FINGER, COG0523, METAP1, METAL BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.A.EDMONDS,M.R.JORDAN,K.THALLURI,H.WU,R.DI MARCHI,D.P.GIEDROC REVDAT 3 15-MAY-24 7SEK 1 REMARK REVDAT 2 22-JUN-22 7SEK 1 JRNL REVDAT 1 01-JUN-22 7SEK 0 JRNL AUTH A.WEISS,C.C.MURDOCH,K.A.EDMONDS,M.R.JORDAN,A.J.MONTEITH, JRNL AUTH 2 Y.R.PERERA,A.M.RODRIGUEZ NASSIF,A.M.PETOLETTI,W.N.BEAVERS, JRNL AUTH 3 M.J.MUNNEKE,S.L.DRURY,E.S.KRYSTOFIAK,K.THALLURI,H.WU, JRNL AUTH 4 A.R.S.KRUSE,R.D.DIMARCHI,R.M.CAPRIOLI,J.M.SPRAGGINS, JRNL AUTH 5 W.J.CHAZIN,D.P.GIEDROC,E.P.SKAAR JRNL TITL ZN-REGULATED GTPASE METALLOPROTEIN ACTIVATOR 1 MODULATES JRNL TITL 2 VERTEBRATE ZINC HOMEOSTASIS. JRNL REF CELL V. 185 2148 2022 JRNL REFN ISSN 1097-4172 JRNL PMID 35584702 JRNL DOI 10.1016/J.CELL.2022.04.011 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.98.13 REMARK 3 AUTHORS : GUNTERT P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7SEK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-OCT-21. REMARK 100 THE DEPOSITION ID IS D_1000260095. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.15 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 2 MM [U-13C; U-15N] ZNG-METAP1 REMARK 210 FUSION, 150 MM SODIUM CHLORIDE, REMARK 210 10 MM SODIUM PHOSPHATE, 2 MM REMARK 210 TCEP, 0.3 MM DSS, 90% H2O/10% REMARK 210 D2O; 2 MM [U-13C; U-15N] ZNG- REMARK 210 METAP1 FUSION, 150 MM SODIUM REMARK 210 CHLORIDE, 10 MM SODIUM PHOSPHATE, REMARK 210 2 MM TCEP, 0.3 MM DSS, 100% D2O; REMARK 210 2 MM [U-10% 13C; U-100% 15N] REMARK 210 ZNG-METAP1 FUSION, 150 MM SODIUM REMARK 210 CHLORIDE, 10 MM SODIUM PHOSPHATE, REMARK 210 2 MM TCEP, 0.3 MM DSS, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HNCO; 3D 1H-15N REMARK 210 NOESY; 3D HN(CA)CO; 3D HBHA(CO) REMARK 210 NH; 3D H(CCO)NH; 3D C(CO)NH; 3D REMARK 210 HCCH-TOCSY; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 2D HBCBCGCDHD; 2D REMARK 210 HBCBCGCDCEHE; 3D HAR(CC-TOCSY- REMARK 210 CGCBCACO)NH; 2D 1H-13C HSQC CT; REMARK 210 2D 1H-15N HSQC LONG-RANGE; 3D 1H- REMARK 210 13C NOESY ALIPHATIC; 3D 1H-13C REMARK 210 NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE NEO; VNMRS REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CARA, TOPSPIN 4.0.9, VNMRJ, REMARK 210 NMRFAM-SPARKY, NMRPIPE, HMSIST, REMARK 210 CYANA 3.98.13 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 2 -73.81 -100.22 REMARK 500 1 CYS A 9 76.21 -114.87 REMARK 500 1 LEU A 12 176.72 -57.55 REMARK 500 1 GLU A 16 101.65 -55.26 REMARK 500 1 ASN A 19 -179.16 -67.50 REMARK 500 1 ALA A 23 51.67 -95.15 REMARK 500 1 THR A 27 110.30 66.70 REMARK 500 1 SER A 36 44.40 -104.81 REMARK 500 2 CYS A 9 76.70 -113.70 REMARK 500 2 GLU A 11 171.01 -52.73 REMARK 500 2 SER A 36 40.40 -107.60 REMARK 500 3 ALA A 6 -73.53 -101.22 REMARK 500 3 CYS A 9 79.31 -111.67 REMARK 500 3 THR A 27 103.73 -57.89 REMARK 500 4 GLU A 2 106.21 -58.37 REMARK 500 4 ALA A 6 -73.84 -84.67 REMARK 500 4 CYS A 9 76.44 -112.75 REMARK 500 4 PRO A 10 -171.20 -69.74 REMARK 500 4 LEU A 12 171.66 -52.86 REMARK 500 4 LYS A 18 45.79 -95.39 REMARK 500 4 ALA A 24 139.46 -175.44 REMARK 500 5 ALA A 6 139.27 -175.24 REMARK 500 5 GLU A 11 173.99 -53.85 REMARK 500 5 LYS A 18 47.98 -109.81 REMARK 500 5 ALA A 23 49.57 -97.76 REMARK 500 5 GLU A 26 123.42 -174.49 REMARK 500 5 THR A 27 104.17 -163.34 REMARK 500 5 SER A 36 45.59 -104.34 REMARK 500 6 CYS A 9 78.09 -111.97 REMARK 500 6 PRO A 10 -173.68 -69.70 REMARK 500 6 LEU A 12 171.31 -52.93 REMARK 500 6 LYS A 18 170.72 -52.44 REMARK 500 6 ALA A 76 52.79 -95.89 REMARK 500 7 GLU A 2 68.68 -110.37 REMARK 500 7 ALA A 6 -62.09 -107.54 REMARK 500 7 CYS A 9 76.10 -112.81 REMARK 500 7 PRO A 10 -171.16 -69.71 REMARK 500 7 LEU A 12 172.99 -52.83 REMARK 500 7 GLU A 21 44.41 -95.30 REMARK 500 7 THR A 27 38.42 -98.33 REMARK 500 7 SER A 36 42.16 -93.58 REMARK 500 7 GLU A 79 -64.03 -98.64 REMARK 500 8 CYS A 9 77.15 -112.47 REMARK 500 8 GLU A 11 178.22 -56.35 REMARK 500 8 THR A 32 160.69 -49.23 REMARK 500 8 LYS A 74 50.79 -106.34 REMARK 500 8 ASP A 78 53.81 -114.00 REMARK 500 9 CYS A 9 78.82 -111.64 REMARK 500 9 ALA A 24 68.17 -107.76 REMARK 500 9 SER A 36 45.58 -105.21 REMARK 500 REMARK 500 THIS ENTRY HAS 119 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 30 SG REMARK 620 2 CYS A 35 SG 110.8 REMARK 620 3 CYS A 57 SG 111.2 109.1 REMARK 620 4 CYS A 61 SG 110.2 108.0 107.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 43 SG REMARK 620 2 CYS A 46 SG 104.4 REMARK 620 3 HIS A 69 NE2 112.0 106.3 REMARK 620 4 HIS A 73 NE2 112.0 106.2 115.1 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30956 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF THE ZINC FINGER DOMAIN OF MURINE METAP1, REMARK 900 COMPLEXED WITH ZNG N-TERMINAL PEPTIDE DBREF 7SEK A 1 21 UNP Q8VEH6 CBWD1_MOUSE 10 30 DBREF 7SEK A 22 80 UNP Q8BP48 MAP11_MOUSE 1 59 SEQRES 1 A 80 ALA GLU GLU GLU TYR ALA GLU ASP CYS PRO GLU LEU VAL SEQRES 2 A 80 PRO ILE GLU THR LYS ASN GLN GLU MET ALA ALA VAL GLU SEQRES 3 A 80 THR ARG VAL CYS GLU THR ASP GLY CYS SER SER GLU ALA SEQRES 4 A 80 LYS LEU GLN CYS PRO THR CYS ILE LYS LEU GLY ILE GLN SEQRES 5 A 80 GLY SER TYR PHE CYS SER GLN GLU CYS PHE LYS GLY SER SEQRES 6 A 80 TRP ALA THR HIS LYS LEU LEU HIS LYS LYS ALA LYS ASP SEQRES 7 A 80 GLU LYS HET ZN A 101 1 HET ZN A 102 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) HELIX 1 AA1 CYS A 43 GLY A 50 1 8 HELIX 2 AA2 SER A 58 LYS A 74 1 17 SHEET 1 AA1 3 VAL A 13 PRO A 14 0 SHEET 2 AA1 3 LEU A 41 GLN A 42 -1 O GLN A 42 N VAL A 13 SHEET 3 AA1 3 TYR A 55 PHE A 56 -1 O PHE A 56 N LEU A 41 LINK SG CYS A 30 ZN ZN A 101 1555 1555 2.30 LINK SG CYS A 35 ZN ZN A 101 1555 1555 2.36 LINK SG CYS A 43 ZN ZN A 102 1555 1555 2.30 LINK SG CYS A 46 ZN ZN A 102 1555 1555 2.49 LINK SG CYS A 57 ZN ZN A 101 1555 1555 2.36 LINK SG CYS A 61 ZN ZN A 101 1555 1555 2.39 LINK NE2 HIS A 69 ZN ZN A 102 1555 1555 2.21 LINK NE2 HIS A 73 ZN ZN A 102 1555 1555 2.21 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1