HEADER VIRAL PROTEIN 02-OCT-21 7SEZ TITLE CRYSTAL STRUCTURE OF VACCINIA VIRUS DECAPPING ENZYME D9 IN COMPLEX TITLE 2 WITH M7GDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA REPAIR NTP-PHOSPHOHYDROLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MUTT MOTIF/MRNA DECAPPING ENZYME,NTP-PHOSPHOHYDROLASE, COMPND 5 PUTATIVE D9R; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VACCINIA VIRUS WESTERN RESERVE; SOURCE 3 ORGANISM_TAXID: 696871; SOURCE 4 GENE: D9R, VACV_BRZ_SERRO2_112, VACV_CTGV_ALEH2_114, SOURCE 5 VACV_CTGV_CG04_114, VACV_CTGV_MI233-114, VACV_CTGV_VI04_114, SOURCE 6 VAC_IHDW1_116, VAC_TKT3_104, VAC_TKT4_104, VAC_TP3_119, VAC_TP5_119, SOURCE 7 VACV_CTGV_CM01_114, VACV_TT10_141, VACV_TT11_141, VACV_TT12_141, SOURCE 8 VACV_TT8_141, VACV_TT9_141; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS NUDIX, DECAPPING, MRNA CAP, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.K.PETERS,R.W.TIBBLE,M.WARMINSKI,J.JEMIELITY,J.D.GROSS REVDAT 3 28-FEB-24 7SEZ 1 COMPND REMARK HET HETNAM REVDAT 3 2 1 FORMUL ATOM REVDAT 2 18-MAY-22 7SEZ 1 JRNL REVDAT 1 30-MAR-22 7SEZ 0 JRNL AUTH J.K.PETERS,R.W.TIBBLE,M.WARMINSKI,J.JEMIELITY,J.D.GROSS JRNL TITL STRUCTURE OF THE POXVIRUS DECAPPING ENZYME D9 REVEALS ITS JRNL TITL 2 MECHANISM OF CAP RECOGNITION AND CATALYSIS. JRNL REF STRUCTURE V. 30 721 2022 JRNL REFN ISSN 0969-2126 JRNL PMID 35290794 JRNL DOI 10.1016/J.STR.2022.02.012 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.348 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 31248 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.400 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 51.5018 - 4.0966 1.00 2236 153 0.1842 0.2054 REMARK 3 2 4.0966 - 3.2518 1.00 2129 145 0.1713 0.1861 REMARK 3 3 3.2518 - 2.8408 1.00 2125 146 0.1886 0.2191 REMARK 3 4 2.8408 - 2.5810 1.00 2080 142 0.2002 0.2480 REMARK 3 5 2.5810 - 2.3960 1.00 2092 143 0.2088 0.2385 REMARK 3 6 2.3960 - 2.2548 1.00 2094 143 0.2094 0.2464 REMARK 3 7 2.2548 - 2.1419 1.00 2070 142 0.2092 0.3021 REMARK 3 8 2.1419 - 2.0486 1.00 2071 141 0.2129 0.2325 REMARK 3 9 2.0486 - 1.9697 1.00 2050 141 0.1998 0.2270 REMARK 3 10 1.9697 - 1.9018 1.00 2074 142 0.2065 0.2456 REMARK 3 11 1.9018 - 1.8423 1.00 2062 141 0.2100 0.2788 REMARK 3 12 1.8423 - 1.7896 1.00 2072 141 0.2260 0.2613 REMARK 3 13 1.7896 - 1.7425 1.00 2042 140 0.2189 0.2784 REMARK 3 14 1.7425 - 1.7000 1.00 2051 140 0.2385 0.2910 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.165 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.83 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1787 REMARK 3 ANGLE : 1.218 2408 REMARK 3 CHIRALITY : 0.050 270 REMARK 3 PLANARITY : 0.006 301 REMARK 3 DIHEDRAL : 13.268 682 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7SEZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-OCT-21. REMARK 100 THE DEPOSITION ID IS D_1000260146. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.115869 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31249 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 51.502 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 12.80 REMARK 200 R MERGE (I) : 0.05312 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CITRATE, PEG 3350, BIS TRIS REMARK 280 PROPANE PH 7.5, MGCL2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.99000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.99000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 26.27500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 70.05000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 26.27500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 70.05000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 37.99000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 26.27500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 70.05000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 37.99000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 26.27500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 70.05000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NA NA A 303 LIES ON A SPECIAL POSITION. REMARK 375 NA NA A 304 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 401 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 474 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 553 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 LYS A 213 REMARK 465 LEU A 214 REMARK 465 GLU A 215 REMARK 465 HIS A 216 REMARK 465 HIS A 217 REMARK 465 HIS A 218 REMARK 465 HIS A 219 REMARK 465 HIS A 220 REMARK 465 HIS A 221 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 30 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 27 C - N - CA ANGL. DEV. = 9.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 28 102.53 61.52 REMARK 500 SER A 29 -114.34 -130.54 REMARK 500 LYS A 30 -94.59 -74.89 REMARK 500 ASN A 64 17.78 -150.89 REMARK 500 LYS A 116 27.00 47.06 REMARK 500 ASN A 211 50.49 -115.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 597 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A 598 DISTANCE = 7.78 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 302 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 100 OD2 REMARK 620 2 HOH A 462 O 35.9 REMARK 620 3 HOH A 484 O 44.0 11.1 REMARK 620 4 HOH A 528 O 44.0 8.6 5.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 305 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 134 O REMARK 620 2 GLN A 169 OE1 75.4 REMARK 620 3 HOH A 433 O 71.2 119.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 308 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 159 O REMARK 620 2 HOH A 515 O 63.5 REMARK 620 3 HOH A 591 O 108.4 88.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 306 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 201 OH REMARK 620 2 HOH A 436 O 156.3 REMARK 620 3 HOH A 453 O 92.2 67.8 REMARK 620 4 HOH A 475 O 69.2 93.6 78.3 REMARK 620 5 HOH A 512 O 135.1 61.6 129.2 99.6 REMARK 620 6 HOH A 526 O 75.4 114.5 147.3 69.0 60.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 303 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 589 O REMARK 620 2 HOH A 589 O 56.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 304 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 474 O REMARK 620 2 HOH A 474 O 0.0 REMARK 620 3 HOH A 556 O 90.6 90.6 REMARK 620 4 HOH A 556 O 90.6 90.6 178.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 307 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 418 O REMARK 620 2 HOH A 431 O 71.2 REMARK 620 3 HOH A 517 O 64.0 124.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 309 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 428 O REMARK 620 2 HOH A 449 O 134.9 REMARK 620 3 HOH A 454 O 55.7 105.5 REMARK 620 4 HOH A 505 O 72.2 74.8 104.1 REMARK 620 5 HOH A 517 O 121.5 98.9 140.7 111.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 310 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 416 O REMARK 620 2 HOH A 531 O 102.7 REMARK 620 3 HOH A 554 O 84.4 158.6 REMARK 620 N 1 2 DBREF 7SEZ A 1 213 UNP L7QJE0 L7QJE0_9POXV 1 213 SEQADV 7SEZ LEU A 214 UNP L7QJE0 EXPRESSION TAG SEQADV 7SEZ GLU A 215 UNP L7QJE0 EXPRESSION TAG SEQADV 7SEZ HIS A 216 UNP L7QJE0 EXPRESSION TAG SEQADV 7SEZ HIS A 217 UNP L7QJE0 EXPRESSION TAG SEQADV 7SEZ HIS A 218 UNP L7QJE0 EXPRESSION TAG SEQADV 7SEZ HIS A 219 UNP L7QJE0 EXPRESSION TAG SEQADV 7SEZ HIS A 220 UNP L7QJE0 EXPRESSION TAG SEQADV 7SEZ HIS A 221 UNP L7QJE0 EXPRESSION TAG SEQRES 1 A 221 MET GLY ILE THR MET ASP GLU GLU VAL ILE PHE GLU THR SEQRES 2 A 221 PRO ARG GLU LEU ILE SER ILE LYS ARG ILE LYS ASP ILE SEQRES 3 A 221 PRO ARG SER LYS ASP THR HIS VAL PHE ALA ALA CYS ILE SEQRES 4 A 221 THR SER ASP GLY TYR PRO LEU ILE GLY ALA ARG ARG THR SEQRES 5 A 221 SER PHE ALA PHE GLN ALA ILE LEU SER GLN GLN ASN SER SEQRES 6 A 221 ASP SER ILE PHE ARG VAL SER THR LYS LEU LEU ARG PHE SEQRES 7 A 221 MET TYR TYR ASN GLU LEU ARG GLU ILE PHE ARG ARG LEU SEQRES 8 A 221 ARG LYS GLY SER ILE ASN ASN ILE ASP PRO HIS PHE GLU SEQRES 9 A 221 GLU LEU ILE LEU LEU GLY GLY LYS LEU ASP LYS LYS GLU SEQRES 10 A 221 SER ILE LYS ASP CYS LEU ARG ARG GLU LEU LYS GLU GLU SEQRES 11 A 221 SER ASP GLU ARG ILE THR VAL LYS GLU PHE GLY ASN VAL SEQRES 12 A 221 ILE LEU LYS LEU THR THR ARG ASP LYS LEU PHE ASN LYS SEQRES 13 A 221 VAL TYR ILE GLY TYR CYS MET ALA CYS PHE ILE ASN GLN SEQRES 14 A 221 SER LEU GLU ASP LEU SER HIS THR SER ILE TYR ASN VAL SEQRES 15 A 221 GLU ILE ARG LYS ILE LYS SER LEU ASN ASP CYS ILE ASN SEQRES 16 A 221 ASP ASP LYS TYR GLU TYR LEU SER TYR ILE TYR ASN MET SEQRES 17 A 221 LEU VAL ASN SER LYS LEU GLU HIS HIS HIS HIS HIS HIS HET M7G A 301 29 HET NA A 302 1 HET NA A 303 1 HET NA A 304 1 HET NA A 305 1 HET NA A 306 1 HET NA A 307 1 HET NA A 308 1 HET NA A 309 1 HET NA A 310 1 HETNAM M7G 7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE HETNAM NA SODIUM ION FORMUL 2 M7G C11 H18 N5 O11 P2 1+ FORMUL 3 NA 9(NA 1+) FORMUL 12 HOH *198(H2 O) HELIX 1 AA1 SER A 53 GLN A 62 1 10 HELIX 2 AA2 SER A 72 MET A 79 5 8 HELIX 3 AA3 TYR A 80 ARG A 89 1 10 HELIX 4 AA4 SER A 118 SER A 131 1 14 HELIX 5 AA5 LEU A 171 SER A 175 5 5 HELIX 6 AA6 ASN A 191 CYS A 193 5 3 HELIX 7 AA7 LYS A 198 ASN A 211 1 14 SHEET 1 AA1 6 GLU A 8 GLU A 12 0 SHEET 2 AA1 6 GLU A 16 ILE A 23 -1 O ILE A 18 N PHE A 11 SHEET 3 AA1 6 VAL A 137 ASP A 151 -1 O LYS A 146 N LYS A 21 SHEET 4 AA1 6 LYS A 156 ILE A 167 -1 O GLY A 160 N LEU A 147 SHEET 5 AA1 6 HIS A 33 ILE A 39 1 N PHE A 35 O TYR A 161 SHEET 6 AA1 6 LEU A 109 LYS A 112 -1 O LEU A 109 N ALA A 36 SHEET 1 AA2 3 LEU A 106 ILE A 107 0 SHEET 2 AA2 3 LEU A 46 ARG A 50 -1 N GLY A 48 O ILE A 107 SHEET 3 AA2 3 ILE A 184 SER A 189 -1 O ARG A 185 N ALA A 49 LINK OD2 ASP A 100 NA NA A 302 1555 3454 2.79 LINK O ARG A 134 NA NA A 305 1555 1555 2.41 LINK O ILE A 159 NA NA A 308 1555 1555 2.93 LINK OE1 GLN A 169 NA NA A 305 1555 1555 3.14 LINK OH TYR A 201 NA NA A 306 1555 1555 2.76 LINK NA NA A 302 O HOH A 462 1555 1555 2.30 LINK NA NA A 302 O HOH A 484 1555 1555 2.35 LINK NA NA A 302 O HOH A 528 1555 3454 2.80 LINK NA NA A 303 O HOH A 589 1555 1555 2.42 LINK NA NA A 303 O HOH A 589 1555 3454 2.42 LINK NA NA A 304 O HOH A 474 1555 1555 2.62 LINK NA NA A 304 O HOH A 474 1555 4555 2.62 LINK NA NA A 304 O HOH A 556 1555 1555 3.18 LINK NA NA A 304 O HOH A 556 1555 4555 3.18 LINK NA NA A 305 O HOH A 433 1555 4555 3.01 LINK NA NA A 306 O HOH A 436 1555 1555 2.80 LINK NA NA A 306 O HOH A 453 1555 1555 2.38 LINK NA NA A 306 O HOH A 475 1555 1555 3.09 LINK NA NA A 306 O HOH A 512 1555 1555 2.92 LINK NA NA A 306 O HOH A 526 1555 1555 2.32 LINK NA NA A 307 O HOH A 418 1555 1555 2.48 LINK NA NA A 307 O HOH A 431 1555 1555 2.88 LINK NA NA A 307 O HOH A 517 1555 1555 2.36 LINK NA NA A 308 O HOH A 515 1555 1555 3.00 LINK NA NA A 308 O HOH A 591 1555 1555 2.57 LINK NA NA A 309 O HOH A 428 1555 1555 2.26 LINK NA NA A 309 O HOH A 449 1555 1555 2.97 LINK NA NA A 309 O HOH A 454 1555 1555 3.03 LINK NA NA A 309 O HOH A 505 1555 1555 2.47 LINK NA NA A 309 O HOH A 517 1555 1555 2.83 LINK NA NA A 310 O HOH A 416 1555 6444 2.41 LINK NA NA A 310 O HOH A 531 1555 1555 2.97 LINK NA NA A 310 O HOH A 554 1555 1555 2.33 CRYST1 52.550 140.100 75.980 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019029 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007138 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013161 0.00000