HEADER DNA BINDING PROTEIN/DNA 05-OCT-21 7SGC TITLE REPLICATION INITIATOR PROTEIN REPE54 AND COGNATE DNA SEQUENCE WITH TITLE 2 TERMINAL FIVE PRIME PHOSPHATES. COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(P*CP*CP*TP*GP*TP*GP*AP*CP*AP*AP*AP*TP*TP*GP*CP*CP*CP*TP*CP*AP*G)- COMPND 4 3'); COMPND 5 CHAIN: A; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(P*CP*TP*GP*AP*GP*GP*GP*CP*AP*AP*TP*TP*TP*GP*TP*CP*AP*CP*AP*GP*G)- COMPND 10 3'); COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: REPB FAMILY PLASMID REPLICATION INITIATOR PROTEIN; COMPND 15 CHAIN: C; COMPND 16 SYNONYM: REPE,REPE PROTEIN,REPLICATION INITIATION PROTEIN,REPLICATION COMPND 17 INITIATION PROTEIN FIA,REPLICATION INITIATION PROTEIN REPE, COMPND 18 REPLICATION INITIATION PROTEIN OF REPFIA,FIA,FIA REPLICON,REPLICATION COMPND 19 PROTEIN; COMPND 20 ENGINEERED: YES; COMPND 21 MUTATION: YES; COMPND 22 MOL_ID: 4; COMPND 23 MOLECULE: UNIDENTIFIED POLYMER; COMPND 24 CHAIN: G; COMPND 25 ENGINEERED: YES; COMPND 26 MOL_ID: 5; COMPND 27 MOLECULE: UNIDENTIFIED POLYMER; COMPND 28 CHAIN: D; COMPND 29 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 4 ORGANISM_TAXID: 562; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 8 ORGANISM_TAXID: 562; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 11 ORGANISM_TAXID: 562; SOURCE 12 GENE: REPE, REPE, REPE_1, REPE_2, A9P13_27925, ACN81_13795, SOURCE 13 AKG29_00005, AM270_25025, AM446_00510, AM465_27515, APX88_12585, SOURCE 14 B9N33_25510, BANRA_05159, BANRA_05459, BANRA_05682, BANRA_05685, SOURCE 15 BE930_02070, BE963_00170, BFD68_26000, BIU72_26315, BK334_12915, SOURCE 16 BON69_00085, BON86_02490, BTQ06_15345, BVCMSKSNP073_00547, SOURCE 17 BVCMSKSNP081_03109, C5F73_28740, C6669_28055, CCZ17_26065, SOURCE 18 CDL37_25390, CUB99_27055, D0X26_27580, D2188_23935, D6C57_20535, SOURCE 19 D6T60_26250, D9G11_25395, D9J60_24770, DL545_01395, DLU82_26460, SOURCE 20 DM102_26130, DMZ50_25125, DN808_25760, DNQ45_17165, DP277_27365, SOURCE 21 E0L04_25075, E4K51_24545, E5P24_21725, E5S56_18100, EA191_27055, SOURCE 22 EA214_24280, EA233_23655, EA834_24495, EC3234A_223C00190, SOURCE 23 ECTO124_05352, EGT48_00285, EIZ93_24320, EJC75_00275, ELT22_23490, SOURCE 24 ELT31_24090, ELT31_26285, ELT33_22145, ELU82_24155, ELU85_22525, SOURCE 25 ELV00_24275, ELV13_22345, ELV22_21715, ELV22_26415, ELV24_23180, SOURCE 26 ELV24_26400, ELX56_23450, ELX56_26570, ELX68_22815, ELX68_25985, SOURCE 27 ELX70_23725, ELX70_27680, ELX79_25360, ELX79_27900, ELX83_21670, SOURCE 28 ELX83_26905, ELY23_22635, ELY23_25820, ELY24_18745, ELY24_28685, SOURCE 29 ELY48_20420, ELY48_27905, ELY50_22820, ELY50_26360, EPS70_23590, SOURCE 30 EQ823_22980, EQ830_17775, ERS085362_04815, ERS150873_04643, SOURCE 31 EVY14_01415, EXPECSC065_01123, F0L67_01685, F7O57_26240, SOURCE 32 FAF34_003215, FKO60_21690, FVA71_27640, G3565_27065, G4276_24945, SOURCE 33 G4280_26215, G5603_23890, G5632_20220, G5697_22865, G5V60_25015, SOURCE 34 GE057_22565, GE087_25865, GE096_23180, GE400_25540, GE558_24730, SOURCE 35 GKE29_21080, GKE58_20235, GKE60_20510, GKE79_19945, GKE87_19350, SOURCE 36 GQY14_24020, GRC73_23425, HGR17_18615, HGR87_25030, HGR88_23710, SOURCE 37 HGS97_17250, HH117_25695, HH456_004544, HH814_004957, HIO03_005020, SOURCE 38 HIZ44_004944, HJ359_004520, HJI79_004024, HJL93_004672, SOURCE 39 HJM89_004053, HJT66_004466, HKA14_004545, HL186_24195, HLI97_004832, SOURCE 40 HMT01_25475, HMT08_23785, HNV94_24925, HNX16_24825, HNX34_21985, SOURCE 41 HPE39_26560, HR075_24855, HV055_25390, HV303_25935, HVW09_26465, SOURCE 42 HVW60_23575, HVW98_24555, HVX24_22925, HVX51_24935, HVY93_24645, SOURCE 43 HVZ71_26895, IB283_25495, IPF_37, PCTXM15_EC8_00107, RCS105_PI0165, SOURCE 44 RCS57_P0140, RCS59_P0063, SAMEA4370330_00165, SAMEA4370365_00054, SOURCE 45 SY51_26335, WP4S17E03_P11650, WP4S18E08_P10410, YDC107_5106; SOURCE 46 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 47 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 48 MOL_ID: 4; SOURCE 49 ORGANISM_SCIENTIFIC: ESCHERICIA COLI; SOURCE 50 ORGANISM_TAXID: 562; SOURCE 51 EXPRESSION_SYSTEM: ESCHERICIA COLI; SOURCE 52 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 53 MOL_ID: 5; SOURCE 54 ORGANISM_SCIENTIFIC: ESCHERICIA COLI; SOURCE 55 ORGANISM_TAXID: 562; SOURCE 56 EXPRESSION_SYSTEM: ESCHERICIA COLI; SOURCE 57 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS REPLICATION INITIATOR REPE COMPLEX CO-CRYSTAL, DNA BINDING PROTEIN- KEYWDS 2 DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.R.WARD,C.D.SNOW REVDAT 3 25-OCT-23 7SGC 1 REMARK REVDAT 2 14-DEC-22 7SGC 1 JRNL REVDAT 1 13-OCT-21 7SGC 0 JRNL AUTH A.R.WARD,S.DMYTRIW,A.VAJAPAYAJULA,C.D.SNOW JRNL TITL STABILIZING DNA-PROTEIN CO-CRYSTALS VIA INTRA-CRYSTAL JRNL TITL 2 CHEMICAL LIGATION OF THE DNA JRNL REF CRYSTALS V. 12 2022 JRNL REFN ESSN 2073-4352 JRNL DOI 10.3390/CRYST12010049 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.V.AFONINE,R.W.GROSSE-KUNSTLEVE,N.ECHOLS,J.J.HEADD, REMARK 1 AUTH 2 N.W.MORIARTY,M.MUSTYAKIMOV,T.C.TERWILLIGER,A.URZHUMTSEV, REMARK 1 AUTH 3 P.H.ZWART,P.D.ADAMS REMARK 1 TITL TOWARDS AUTOMATED CRYSTALLOGRAPHIC STRUCTURE REFINEMENT WITH REMARK 1 TITL 2 PHENIX.REFINE. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 68 352 2012 REMARK 1 REFN ESSN 1399-0047 REMARK 1 PMID 22505256 REMARK 1 DOI 10.1107/S0907444912001308 REMARK 1 REFERENCE 2 REMARK 1 AUTH D.LIEBSCHNER,P.V.AFONINE,M.L.BAKER,G.BUNKOCZI,V.B.CHEN, REMARK 1 AUTH 2 T.I.CROLL,B.HINTZE,L.W.HUNG,S.JAIN,A.J.MCCOY,N.W.MORIARTY, REMARK 1 AUTH 3 R.D.OEFFNER,B.K.POON,M.G.PRISANT,R.J.READ,J.S.RICHARDSON, REMARK 1 AUTH 4 D.C.RICHARDSON,M.D.SAMMITO,O.V.SOBOLEV,D.H.STOCKWELL, REMARK 1 AUTH 5 T.C.TERWILLIGER,A.G.URZHUMTSEV,L.L.VIDEAU,C.J.WILLIAMS, REMARK 1 AUTH 6 P.D.ADAMS REMARK 1 TITL MACROMOLECULAR STRUCTURE DETERMINATION USING X-RAYS, REMARK 1 TITL 2 NEUTRONS AND ELECTRONS: RECENT DEVELOPMENTS IN PHENIX. REMARK 1 REF ACTA CRYSTALLOGR D STRUCT V. 75 861 2019 REMARK 1 REF 2 BIOL REMARK 1 REFN ISSN 2059-7983 REMARK 1 PMID 31588918 REMARK 1 DOI 10.1107/S2059798319011471 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 14342 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.240 REMARK 3 FREE R VALUE TEST SET COUNT : 751 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.7700 - 4.6100 0.98 2871 151 0.1526 0.2030 REMARK 3 2 4.6100 - 3.6600 0.96 2790 164 0.1677 0.2250 REMARK 3 3 3.6600 - 3.2000 0.94 2692 148 0.2003 0.2546 REMARK 3 4 3.2000 - 2.9100 0.90 2570 142 0.2687 0.3694 REMARK 3 5 2.9100 - 2.7000 0.93 2668 146 0.3028 0.3860 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.414 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.274 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 61.14 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 75.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 2923 REMARK 3 ANGLE : 1.297 4135 REMARK 3 CHIRALITY : 0.073 445 REMARK 3 PLANARITY : 0.007 387 REMARK 3 DIHEDRAL : 27.756 686 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.4389 -27.3787 13.3983 REMARK 3 T TENSOR REMARK 3 T11: 0.6028 T22: 0.6138 REMARK 3 T33: 1.3748 T12: 0.1753 REMARK 3 T13: 0.1661 T23: 0.2031 REMARK 3 L TENSOR REMARK 3 L11: 5.2990 L22: 4.7303 REMARK 3 L33: 6.7156 L12: -1.9222 REMARK 3 L13: -1.1747 L23: 1.8068 REMARK 3 S TENSOR REMARK 3 S11: -0.6092 S12: 0.0686 S13: -1.7093 REMARK 3 S21: 0.6952 S22: 0.1184 S23: 1.3931 REMARK 3 S31: 0.7133 S32: -0.3020 S33: 0.3969 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.3226 -5.9287 14.0841 REMARK 3 T TENSOR REMARK 3 T11: 0.5831 T22: 0.9155 REMARK 3 T33: 1.4621 T12: 0.2538 REMARK 3 T13: 0.1124 T23: 0.2153 REMARK 3 L TENSOR REMARK 3 L11: 4.5176 L22: 0.2862 REMARK 3 L33: 1.6027 L12: -1.1656 REMARK 3 L13: -2.6804 L23: 0.7055 REMARK 3 S TENSOR REMARK 3 S11: -0.1770 S12: 0.0030 S13: -0.9540 REMARK 3 S21: 0.1699 S22: 0.2444 S23: 0.9817 REMARK 3 S31: -0.4111 S32: -0.8274 S33: 0.0576 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 23 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.9183 3.8566 14.2829 REMARK 3 T TENSOR REMARK 3 T11: 0.5990 T22: 1.0066 REMARK 3 T33: 1.3123 T12: 0.7569 REMARK 3 T13: 0.2020 T23: 0.4429 REMARK 3 L TENSOR REMARK 3 L11: 1.5017 L22: 0.7153 REMARK 3 L33: 1.1160 L12: -0.3802 REMARK 3 L13: 0.2470 L23: 0.4240 REMARK 3 S TENSOR REMARK 3 S11: 0.1076 S12: 0.0436 S13: -0.3608 REMARK 3 S21: -0.0260 S22: -0.2601 S23: 0.3565 REMARK 3 S31: 0.1476 S32: -0.0064 S33: -0.0091 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 28 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.9613 -13.9827 15.0922 REMARK 3 T TENSOR REMARK 3 T11: 0.7558 T22: 0.7283 REMARK 3 T33: 1.7371 T12: 0.1902 REMARK 3 T13: 0.2215 T23: 0.3462 REMARK 3 L TENSOR REMARK 3 L11: 8.1855 L22: 3.6343 REMARK 3 L33: 6.9590 L12: -3.8861 REMARK 3 L13: -1.1498 L23: 2.5442 REMARK 3 S TENSOR REMARK 3 S11: -0.6640 S12: -0.2964 S13: -1.6324 REMARK 3 S21: 1.2675 S22: 0.8394 S23: -0.1825 REMARK 3 S31: 0.4523 S32: -0.2534 S33: -0.1202 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 33 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.2070 -18.4530 12.6410 REMARK 3 T TENSOR REMARK 3 T11: 0.5127 T22: 0.5572 REMARK 3 T33: 1.0739 T12: 0.1608 REMARK 3 T13: 0.0561 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 0.9578 L22: 3.0133 REMARK 3 L33: 3.5257 L12: 1.3061 REMARK 3 L13: -1.3388 L23: -0.6347 REMARK 3 S TENSOR REMARK 3 S11: 0.0297 S12: -0.0816 S13: -1.3190 REMARK 3 S21: -0.1589 S22: -0.1547 S23: 1.2142 REMARK 3 S31: 0.6544 S32: 0.2832 S33: 0.1176 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 38 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.6107 -33.7454 13.9571 REMARK 3 T TENSOR REMARK 3 T11: 0.7201 T22: 0.9538 REMARK 3 T33: 1.5802 T12: 0.3596 REMARK 3 T13: 0.1628 T23: 0.1781 REMARK 3 L TENSOR REMARK 3 L11: 1.3009 L22: 5.9430 REMARK 3 L33: 5.9261 L12: 1.1892 REMARK 3 L13: -1.8116 L23: 1.7418 REMARK 3 S TENSOR REMARK 3 S11: -1.2401 S12: -0.8734 S13: -2.5670 REMARK 3 S21: 0.5858 S22: 0.7007 S23: 0.9630 REMARK 3 S31: 1.3286 S32: 0.7804 S33: 0.5169 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 11 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.9716 6.9443 12.6904 REMARK 3 T TENSOR REMARK 3 T11: 0.6095 T22: 0.4648 REMARK 3 T33: 0.8288 T12: 0.1340 REMARK 3 T13: 0.1295 T23: 0.2344 REMARK 3 L TENSOR REMARK 3 L11: 6.6271 L22: 1.6788 REMARK 3 L33: 1.3102 L12: -1.3417 REMARK 3 L13: -0.6039 L23: 1.4393 REMARK 3 S TENSOR REMARK 3 S11: 0.2399 S12: 0.5109 S13: 0.7084 REMARK 3 S21: -0.0948 S22: 0.0430 S23: 0.4078 REMARK 3 S31: -0.5972 S32: -0.1506 S33: -0.2440 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 90 THROUGH 132 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.1298 7.4562 24.3336 REMARK 3 T TENSOR REMARK 3 T11: 0.5070 T22: 0.5171 REMARK 3 T33: 0.7112 T12: 0.0605 REMARK 3 T13: 0.2620 T23: 0.1342 REMARK 3 L TENSOR REMARK 3 L11: 0.9712 L22: 4.8048 REMARK 3 L33: 7.4468 L12: 1.8919 REMARK 3 L13: 1.8674 L23: 1.5522 REMARK 3 S TENSOR REMARK 3 S11: 0.1104 S12: -0.0886 S13: 0.7091 REMARK 3 S21: 0.2200 S22: -0.0176 S23: -0.1145 REMARK 3 S31: -0.4832 S32: 0.2789 S33: -0.0453 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 133 THROUGH 208 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.7158 -2.5726 10.2206 REMARK 3 T TENSOR REMARK 3 T11: 0.3535 T22: 0.5635 REMARK 3 T33: 0.6228 T12: 0.0116 REMARK 3 T13: 0.0181 T23: 0.1328 REMARK 3 L TENSOR REMARK 3 L11: 4.4594 L22: 1.7613 REMARK 3 L33: 4.4509 L12: -1.1194 REMARK 3 L13: -2.1400 L23: 2.4050 REMARK 3 S TENSOR REMARK 3 S11: 0.2584 S12: 0.1679 S13: 0.4695 REMARK 3 S21: -0.0168 S22: 0.1783 S23: -0.0024 REMARK 3 S31: -0.5993 S32: 0.5617 S33: -0.4182 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 209 THROUGH 247 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.1277 -9.9092 1.1530 REMARK 3 T TENSOR REMARK 3 T11: 0.2989 T22: 0.5184 REMARK 3 T33: 0.4984 T12: 0.0429 REMARK 3 T13: 0.0201 T23: 0.0196 REMARK 3 L TENSOR REMARK 3 L11: 6.0585 L22: 9.2391 REMARK 3 L33: 8.4031 L12: -3.2570 REMARK 3 L13: 2.1183 L23: -3.6914 REMARK 3 S TENSOR REMARK 3 S11: 0.1276 S12: 0.4708 S13: -0.1740 REMARK 3 S21: -0.3683 S22: -0.1405 S23: 0.5132 REMARK 3 S31: -0.0033 S32: 0.2009 S33: 0.0181 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7SGC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-OCT-21. REMARK 100 THE DEPOSITION ID IS D_1000259263. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI (111) DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : RDI CMOS_8M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JAN 31, 2020 REMARK 200 DATA SCALING SOFTWARE : XSCALE JAN 31, 2020, SCALA REMARK 200 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14437 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 36.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.69500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: 7RVA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30 MM MGCL2, 18% PEG 400, 220 MM TRIS REMARK 280 HCL, PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 54.58050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.52550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 54.58050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 41.52550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C -11 REMARK 465 ARG C -10 REMARK 465 GLY C -9 REMARK 465 SER C -8 REMARK 465 HIS C -7 REMARK 465 HIS C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 GLU C 3 REMARK 465 THR C 4 REMARK 465 ALA C 5 REMARK 465 VAL C 6 REMARK 465 ILE C 7 REMARK 465 ASN C 8 REMARK 465 HIS C 9 REMARK 465 LYS C 10 REMARK 465 ASP C 50 REMARK 465 GLY C 51 REMARK 465 THR C 52 REMARK 465 LEU C 53 REMARK 465 GLN C 54 REMARK 465 ARG C 98 REMARK 465 PRO C 99 REMARK 465 GLU C 100 REMARK 465 GLU C 101 REMARK 465 ASP C 102 REMARK 465 ALA C 103 REMARK 465 GLY C 104 REMARK 465 ASP C 105 REMARK 465 GLU C 106 REMARK 465 MET C 248 REMARK 465 THR C 249 REMARK 465 THR C 250 REMARK 465 GLY C 251 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS C 11 CG CD CE NZ REMARK 470 LYS C 13 CG CD CE NZ REMARK 470 GLU C 55 CG CD OE1 OE2 REMARK 470 LYS C 80 NZ REMARK 470 LYS C 87 CD CE NZ REMARK 470 LYS C 107 CG CD CE NZ REMARK 470 LYS C 117 CD CE NZ REMARK 470 LEU C 142 CG CD1 CD2 REMARK 470 GLN C 143 CG CD OE1 NE2 REMARK 470 ASN C 144 CG OD1 ND2 REMARK 470 LYS C 230 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC A 1 P DC A 1 OP3 -0.116 REMARK 500 DC A 2 O3' DC A 2 C3' -0.047 REMARK 500 DT A 12 O3' DT A 12 C3' -0.043 REMARK 500 DC B 23 P DC B 23 OP3 -0.109 REMARK 500 DG B 25 O3' DG B 25 C3' -0.045 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG A 21 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 DG B 25 O4' - C1' - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 DC B 38 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG C 47 -18.67 -47.18 REMARK 500 ARG C 145 46.83 -148.67 REMARK 500 PHE C 208 -58.54 -124.91 REMARK 500 THR C 246 5.55 -65.74 REMARK 500 UNK D 5 175.06 -56.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 102 O REMARK 620 2 GLU C 77 OE2 83.2 REMARK 620 3 ASP C 81 OD1 154.9 71.7 REMARK 620 4 HOH C 403 O 119.1 155.1 85.8 REMARK 620 5 HOH C 405 O 77.9 71.9 95.5 100.5 REMARK 620 6 HOH C 407 O 100.7 81.9 74.6 102.8 153.8 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1REP RELATED DB: PDB REMARK 900 1REP CONTAINS THE SAME PROTEIN COMPLEXED WITH DSDNA. REMARK 900 RELATED ID: 7RVA RELATED DB: PDB REMARK 900 7RVA WAS THE STARTING MODEL FOR THIS STRUCTURE AND CONTAINS THE REMARK 900 SAME PROTEIN COMPLEXED WITH DSDNA. REMARK 900 RELATED ID: 7SDP RELATED DB: PDB REMARK 900 7SDP CONTAINS THE SAME PROTEIN COMPLEXED WITH DSDNA. DBREF 7SGC A 1 21 PDB 7SGC 7SGC 1 21 DBREF 7SGC B 23 43 PDB 7SGC 7SGC 23 43 DBREF 7SGC C 1 251 UNP Q0E856 Q0E856_ECOLX 1 251 DBREF 7SGC G 1 3 PDB 7SGC 7SGC 1 3 DBREF 7SGC D 4 7 PDB 7SGC 7SGC 4 7 SEQADV 7SGC MET C -11 UNP Q0E856 INITIATING METHIONINE SEQADV 7SGC ARG C -10 UNP Q0E856 EXPRESSION TAG SEQADV 7SGC GLY C -9 UNP Q0E856 EXPRESSION TAG SEQADV 7SGC SER C -8 UNP Q0E856 EXPRESSION TAG SEQADV 7SGC HIS C -7 UNP Q0E856 EXPRESSION TAG SEQADV 7SGC HIS C -6 UNP Q0E856 EXPRESSION TAG SEQADV 7SGC HIS C -5 UNP Q0E856 EXPRESSION TAG SEQADV 7SGC HIS C -4 UNP Q0E856 EXPRESSION TAG SEQADV 7SGC HIS C -3 UNP Q0E856 EXPRESSION TAG SEQADV 7SGC HIS C -2 UNP Q0E856 EXPRESSION TAG SEQADV 7SGC GLY C -1 UNP Q0E856 EXPRESSION TAG SEQADV 7SGC SER C 0 UNP Q0E856 EXPRESSION TAG SEQADV 7SGC PRO C 118 UNP Q0E856 ARG 118 ENGINEERED MUTATION SEQRES 1 A 21 DC DC DT DG DT DG DA DC DA DA DA DT DT SEQRES 2 A 21 DG DC DC DC DT DC DA DG SEQRES 1 B 21 DC DT DG DA DG DG DG DC DA DA DT DT DT SEQRES 2 B 21 DG DT DC DA DC DA DG DG SEQRES 1 C 263 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 C 263 ALA GLU THR ALA VAL ILE ASN HIS LYS LYS ARG LYS ASN SEQRES 3 C 263 SER PRO ARG ILE VAL GLN SER ASN ASP LEU THR GLU ALA SEQRES 4 C 263 ALA TYR SER LEU SER ARG ASP GLN LYS ARG MET LEU TYR SEQRES 5 C 263 LEU PHE VAL ASP GLN ILE ARG LYS SER ASP GLY THR LEU SEQRES 6 C 263 GLN GLU HIS ASP GLY ILE CYS GLU ILE HIS VAL ALA LYS SEQRES 7 C 263 TYR ALA GLU ILE PHE GLY LEU THR SER ALA GLU ALA SER SEQRES 8 C 263 LYS ASP ILE ARG GLN ALA LEU LYS SER PHE ALA GLY LYS SEQRES 9 C 263 GLU VAL VAL PHE TYR ARG PRO GLU GLU ASP ALA GLY ASP SEQRES 10 C 263 GLU LYS GLY TYR GLU SER PHE PRO TRP PHE ILE LYS PRO SEQRES 11 C 263 ALA HIS SER PRO SER ARG GLY LEU TYR SER VAL HIS ILE SEQRES 12 C 263 ASN PRO TYR LEU ILE PRO PHE PHE ILE GLY LEU GLN ASN SEQRES 13 C 263 ARG PHE THR GLN PHE ARG LEU SER GLU THR LYS GLU ILE SEQRES 14 C 263 THR ASN PRO TYR ALA MET ARG LEU TYR GLU SER LEU CYS SEQRES 15 C 263 GLN TYR ARG LYS PRO ASP GLY SER GLY ILE VAL SER LEU SEQRES 16 C 263 LYS ILE ASP TRP ILE ILE GLU ARG TYR GLN LEU PRO GLN SEQRES 17 C 263 SER TYR GLN ARG MET PRO ASP PHE ARG ARG ARG PHE LEU SEQRES 18 C 263 GLN VAL CYS VAL ASN GLU ILE ASN SER ARG THR PRO MET SEQRES 19 C 263 ARG LEU SER TYR ILE GLU LYS LYS LYS GLY ARG GLN THR SEQRES 20 C 263 THR HIS ILE VAL PHE SER PHE ARG ASP ILE THR SER MET SEQRES 21 C 263 THR THR GLY SEQRES 1 G 3 UNK UNK UNK SEQRES 1 D 4 UNK UNK UNK UNK HET MG C 301 1 HET MG C 302 1 HET MG C 303 1 HETNAM MG MAGNESIUM ION FORMUL 6 MG 3(MG 2+) FORMUL 9 HOH *27(H2 O) HELIX 1 AA1 LYS C 11 SER C 15 5 5 HELIX 2 AA2 ASN C 22 GLU C 26 1 5 HELIX 3 AA3 SER C 32 ARG C 47 1 16 HELIX 4 AA4 VAL C 64 GLY C 72 1 9 HELIX 5 AA5 THR C 74 SER C 88 1 15 HELIX 6 AA6 LEU C 135 ILE C 140 1 6 HELIX 7 AA7 LEU C 151 GLU C 156 1 6 HELIX 8 AA8 ASN C 159 TYR C 172 1 14 HELIX 9 AA9 ILE C 185 TYR C 192 1 8 HELIX 10 AB1 PRO C 195 GLN C 199 5 5 HELIX 11 AB2 ARG C 200 PHE C 208 1 9 HELIX 12 AB3 PHE C 208 THR C 220 1 13 SHEET 1 AA1 2 ARG C 17 SER C 21 0 SHEET 2 AA1 2 PHE C 146 ARG C 150 -1 O THR C 147 N GLN C 20 SHEET 1 AA2 3 ILE C 59 HIS C 63 0 SHEET 2 AA2 3 LEU C 126 HIS C 130 -1 O VAL C 129 N CYS C 60 SHEET 3 AA2 3 HIS C 120 SER C 123 -1 N HIS C 120 O SER C 128 SHEET 1 AA3 2 GLU C 93 PHE C 96 0 SHEET 2 AA3 2 GLU C 110 PRO C 113 -1 O PHE C 112 N VAL C 94 SHEET 1 AA4 3 GLY C 179 LYS C 184 0 SHEET 2 AA4 3 GLN C 234 ASP C 244 -1 O PHE C 240 N VAL C 181 SHEET 3 AA4 3 MET C 222 LYS C 231 -1 N LYS C 229 O THR C 236 LINK O HOH A 102 MG MG C 302 1555 1555 2.03 LINK O HOH A 103 MG MG C 301 1555 1555 2.81 LINK OE2 GLU C 77 MG MG C 302 1555 1555 2.40 LINK OD1 ASP C 81 MG MG C 302 1555 1555 2.39 LINK MG MG C 302 O HOH C 403 1555 1555 2.11 LINK MG MG C 302 O HOH C 405 1555 1555 2.27 LINK MG MG C 302 O HOH C 407 1555 1555 2.01 CRYST1 109.161 83.051 74.349 90.00 123.95 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009161 0.000000 0.006167 0.00000 SCALE2 0.000000 0.012041 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016214 0.00000