HEADER LIGASE 09-OCT-21 7SHL TITLE STRUCTURE OF XENOPUS LAEVIS CRL2LRR1 (STATE 2) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CULLIN_2 DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: TCEB2-PROV PROTEIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: ELONGIN-C; COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: LRR1; COMPND 15 CHAIN: L; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 5; COMPND 18 MOLECULE: RING-TYPE DOMAIN-CONTAINING PROTEIN; COMPND 19 CHAIN: R; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 3 ORGANISM_COMMON: AFRICAN CLAWED FROG; SOURCE 4 ORGANISM_TAXID: 8355; SOURCE 5 GENE: CUL2.L, CUL2, XELAEV_18030721MG; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 10 ORGANISM_COMMON: AFRICAN CLAWED FROG; SOURCE 11 ORGANISM_TAXID: 8355; SOURCE 12 GENE: ELOB.L, ELOB, TCEB2; SOURCE 13 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 17 ORGANISM_COMMON: AFRICAN CLAWED FROG; SOURCE 18 ORGANISM_TAXID: 8355; SOURCE 19 GENE: ELOC.L, ELOC, TCEB1, XELAEV_18031836MG, XELAEV_18033803MG; SOURCE 20 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 22 MOL_ID: 4; SOURCE 23 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 24 ORGANISM_COMMON: AFRICAN CLAWED FROG; SOURCE 25 ORGANISM_TAXID: 8355; SOURCE 26 GENE: LRR1.L, LRR1, MGC82386, XELAEV_18039633MG; SOURCE 27 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 28 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 29 MOL_ID: 5; SOURCE 30 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 31 ORGANISM_COMMON: AFRICAN CLAWED FROG; SOURCE 32 ORGANISM_TAXID: 8355; SOURCE 33 GENE: XELAEV_18023559MG; SOURCE 34 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 35 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS CULLIN RING E3 UBIQUITIN LIGASE, DNA REPLICATION TERMINATION, LIGASE EXPDTA ELECTRON MICROSCOPY AUTHOR H.ZHOU,A.BROWN REVDAT 2 29-DEC-21 7SHL 1 JRNL REVDAT 1 08-DEC-21 7SHL 0 JRNL AUTH H.ZHOU,M.S.ZAHER,J.C.WALTER,A.BROWN JRNL TITL STRUCTURE OF CRL2LRR1, THE E3 UBIQUITIN LIGASE THAT PROMOTES JRNL TITL 2 DNA REPLICATION TERMINATION IN VERTEBRATES. JRNL REF NUCLEIC ACIDS RES. V. 49 13194 2021 JRNL REFN ESSN 1362-4962 JRNL PMID 34850944 JRNL DOI 10.1093/NAR/GKAB1174 REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : COOT, PHENIX, RELION REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : OTHER REMARK 3 REFINEMENT TARGET : CORRELATION COEFFICIENT REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.500 REMARK 3 NUMBER OF PARTICLES : 406755 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7SHL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-OCT-21. REMARK 100 THE DEPOSITION ID IS D_1000260288. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : CRL2LRR1 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.80 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : BLOT 6 SECONDS WITH THE FORCE REMARK 245 12 REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.60 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 BIOQUANTUM (6K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5450.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, L, R REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 647 REMARK 465 ARG A 648 REMARK 465 THR A 649 REMARK 465 LYS A 650 REMARK 465 PHE A 651 REMARK 465 LYS A 652 REMARK 465 ILE A 653 REMARK 465 THR A 654 REMARK 465 THR A 655 REMARK 465 PRO A 656 REMARK 465 MET A 657 REMARK 465 GLN A 658 REMARK 465 LYS A 659 REMARK 465 ASP A 660 REMARK 465 THR A 661 REMARK 465 PRO A 662 REMARK 465 GLN A 663 REMARK 465 GLU A 664 REMARK 465 VAL A 665 REMARK 465 GLU A 666 REMARK 465 GLN A 667 REMARK 465 THR A 668 REMARK 465 ARG A 669 REMARK 465 SER A 670 REMARK 465 ALA A 671 REMARK 465 VAL A 672 REMARK 465 ASP A 673 REMARK 465 GLU A 674 REMARK 465 ASP A 675 REMARK 465 ARG A 676 REMARK 465 LYS A 677 REMARK 465 MET A 678 REMARK 465 TYR A 679 REMARK 465 LEU A 680 REMARK 465 GLN A 681 REMARK 465 ALA A 682 REMARK 465 ALA A 683 REMARK 465 ILE A 684 REMARK 465 VAL A 685 REMARK 465 ARG A 686 REMARK 465 ILE A 687 REMARK 465 MET A 688 REMARK 465 LYS A 689 REMARK 465 ALA A 690 REMARK 465 ARG A 691 REMARK 465 LYS A 692 REMARK 465 VAL A 693 REMARK 465 LEU A 694 REMARK 465 ARG A 695 REMARK 465 HIS A 696 REMARK 465 ASN A 697 REMARK 465 ALA A 698 REMARK 465 LEU A 699 REMARK 465 ILE A 700 REMARK 465 GLN A 701 REMARK 465 GLU A 702 REMARK 465 VAL A 703 REMARK 465 ILE A 704 REMARK 465 SER A 705 REMARK 465 GLN A 706 REMARK 465 SER A 707 REMARK 465 ARG A 708 REMARK 465 ALA A 709 REMARK 465 ARG A 710 REMARK 465 PHE A 711 REMARK 465 ASN A 712 REMARK 465 PRO A 713 REMARK 465 SER A 714 REMARK 465 ILE A 715 REMARK 465 SER A 716 REMARK 465 MET A 717 REMARK 465 ILE A 718 REMARK 465 LYS A 719 REMARK 465 LYS A 720 REMARK 465 CYS A 721 REMARK 465 ILE A 722 REMARK 465 GLU A 723 REMARK 465 VAL A 724 REMARK 465 LEU A 725 REMARK 465 ILE A 726 REMARK 465 ASP A 727 REMARK 465 LYS A 728 REMARK 465 GLN A 729 REMARK 465 TYR A 730 REMARK 465 ILE A 731 REMARK 465 GLU A 732 REMARK 465 ARG A 733 REMARK 465 SER A 734 REMARK 465 GLN A 735 REMARK 465 ALA A 736 REMARK 465 SER A 737 REMARK 465 ALA A 738 REMARK 465 ASP A 739 REMARK 465 GLU A 740 REMARK 465 TYR A 741 REMARK 465 SER A 742 REMARK 465 TYR A 743 REMARK 465 VAL A 744 REMARK 465 ALA A 745 REMARK 465 MET B 1 REMARK 465 GLU B 99 REMARK 465 LEU B 100 REMARK 465 PRO B 101 REMARK 465 ASP B 102 REMARK 465 VAL B 103 REMARK 465 MET B 104 REMARK 465 LYS B 105 REMARK 465 PRO B 106 REMARK 465 GLN B 107 REMARK 465 GLU B 108 REMARK 465 THR B 109 REMARK 465 SER B 110 REMARK 465 GLY B 111 REMARK 465 SER B 112 REMARK 465 ALA B 113 REMARK 465 ASN B 114 REMARK 465 GLU B 115 REMARK 465 GLN B 116 REMARK 465 ALA B 117 REMARK 465 VAL B 118 REMARK 465 GLN B 119 REMARK 465 MET C 1 REMARK 465 ASP C 2 REMARK 465 GLY C 3 REMARK 465 GLU C 4 REMARK 465 GLU C 5 REMARK 465 LYS C 6 REMARK 465 THR C 7 REMARK 465 TYR C 8 REMARK 465 GLY C 9 REMARK 465 GLY C 10 REMARK 465 CYS C 11 REMARK 465 GLU C 12 REMARK 465 GLY C 13 REMARK 465 PRO C 14 REMARK 465 MET L 1 REMARK 465 LYS L 2 REMARK 465 LEU L 3 REMARK 465 GLN L 4 REMARK 465 CYS L 5 REMARK 465 GLU L 6 REMARK 465 VAL L 7 REMARK 465 GLU L 8 REMARK 465 VAL L 9 REMARK 465 ILE L 10 REMARK 465 ASN L 11 REMARK 465 ARG L 12 REMARK 465 MET L 13 REMARK 465 LEU L 14 REMARK 465 PRO L 15 REMARK 465 THR L 16 REMARK 465 PHE L 17 REMARK 465 GLY L 18 REMARK 465 LEU L 19 REMARK 465 LYS L 20 REMARK 465 ASN L 21 REMARK 465 ARG L 22 REMARK 465 GLY L 23 REMARK 465 LYS L 24 REMARK 465 GLY L 25 REMARK 465 THR L 26 REMARK 465 ARG L 27 REMARK 465 ALA L 28 REMARK 465 VAL L 29 REMARK 465 LEU L 30 REMARK 465 SER L 31 REMARK 465 VAL L 32 REMARK 465 GLY L 33 REMARK 465 ARG L 34 REMARK 465 GLN L 35 REMARK 465 GLU L 36 REMARK 465 GLY L 37 REMARK 465 LYS L 38 REMARK 465 ARG L 39 REMARK 465 GLY L 40 REMARK 465 ALA L 41 REMARK 465 ALA L 42 REMARK 465 TYR L 43 REMARK 465 LEU L 44 REMARK 465 MET L 45 REMARK 465 ILE L 46 REMARK 465 CYS L 47 REMARK 465 THR L 48 REMARK 465 LEU L 49 REMARK 465 LYS L 50 REMARK 465 ASP L 51 REMARK 465 LYS L 52 REMARK 465 SER L 53 REMARK 465 GLY L 54 REMARK 465 SER L 55 REMARK 465 ARG L 56 REMARK 465 TYR L 57 REMARK 465 LYS L 58 REMARK 465 LEU L 59 REMARK 465 GLU L 60 REMARK 465 ASN L 61 REMARK 465 ASN L 62 REMARK 465 ILE L 63 REMARK 465 GLU L 64 REMARK 465 GLN L 65 REMARK 465 LEU L 66 REMARK 465 PHE L 67 REMARK 465 THR L 68 REMARK 465 ARG L 69 REMARK 465 PHE L 70 REMARK 465 VAL L 71 REMARK 465 GLY L 72 REMARK 465 GLU L 73 REMARK 465 GLY L 74 REMARK 465 LYS L 75 REMARK 465 ALA L 76 REMARK 465 THR L 77 REMARK 465 LEU L 78 REMARK 465 ARG L 79 REMARK 465 LEU L 80 REMARK 465 LYS L 81 REMARK 465 GLU L 82 REMARK 465 PRO L 83 REMARK 465 ALA L 84 REMARK 465 LEU L 85 REMARK 465 ASP L 86 REMARK 465 ILE L 87 REMARK 465 CYS L 88 REMARK 465 LEU L 89 REMARK 465 SER L 90 REMARK 465 LYS L 91 REMARK 465 ALA L 92 REMARK 465 GLU L 93 REMARK 465 ILE L 94 REMARK 465 CYS L 95 REMARK 465 GLY L 96 REMARK 465 LEU L 97 REMARK 465 ARG L 98 REMARK 465 ASN L 99 REMARK 465 PHE L 100 REMARK 465 ILE L 101 REMARK 465 SER L 102 REMARK 465 THR L 103 REMARK 465 VAL L 104 REMARK 465 GLY L 105 REMARK 465 LEU L 106 REMARK 465 ALA L 107 REMARK 465 ASN L 108 REMARK 465 LYS L 109 REMARK 465 GLY L 110 REMARK 465 THR L 111 REMARK 465 ASP L 112 REMARK 465 ILE L 113 REMARK 465 GLY L 114 REMARK 465 THR L 115 REMARK 465 VAL L 116 REMARK 465 SER L 117 REMARK 465 LEU L 118 REMARK 465 PRO L 119 REMARK 465 ARG L 120 REMARK 465 LEU L 121 REMARK 465 THR L 122 REMARK 465 PRO L 123 REMARK 465 ALA L 124 REMARK 465 LYS L 125 REMARK 465 THR L 126 REMARK 465 SER L 127 REMARK 465 GLU L 128 REMARK 465 ILE L 129 REMARK 465 GLU L 130 REMARK 465 LYS L 131 REMARK 465 PRO L 132 REMARK 465 ARG L 133 REMARK 465 THR L 416 REMARK 465 ARG L 417 REMARK 465 VAL L 418 REMARK 465 MET R 1 REMARK 465 ALA R 2 REMARK 465 ALA R 3 REMARK 465 ALA R 4 REMARK 465 MET R 5 REMARK 465 ASP R 6 REMARK 465 VAL R 7 REMARK 465 ASP R 8 REMARK 465 THR R 9 REMARK 465 PRO R 10 REMARK 465 SER R 11 REMARK 465 GLY R 12 REMARK 465 ALA R 13 REMARK 465 ASN R 14 REMARK 465 ASN R 15 REMARK 465 SER R 16 REMARK 465 ALA R 17 REMARK 465 GLY R 18 REMARK 465 LYS R 19 REMARK 465 LYS R 20 REMARK 465 ILE R 37 REMARK 465 VAL R 38 REMARK 465 VAL R 39 REMARK 465 ASP R 40 REMARK 465 ASN R 41 REMARK 465 CYS R 42 REMARK 465 ALA R 43 REMARK 465 ILE R 44 REMARK 465 CYS R 45 REMARK 465 ARG R 46 REMARK 465 ASN R 47 REMARK 465 HIS R 48 REMARK 465 ILE R 49 REMARK 465 MET R 50 REMARK 465 ASP R 51 REMARK 465 LEU R 52 REMARK 465 CYS R 53 REMARK 465 ILE R 54 REMARK 465 GLU R 55 REMARK 465 CYS R 56 REMARK 465 GLN R 57 REMARK 465 ALA R 58 REMARK 465 ASN R 59 REMARK 465 GLN R 60 REMARK 465 ALA R 61 REMARK 465 SER R 62 REMARK 465 ALA R 63 REMARK 465 THR R 64 REMARK 465 SER R 65 REMARK 465 GLU R 66 REMARK 465 GLU R 67 REMARK 465 CYS R 68 REMARK 465 THR R 69 REMARK 465 VAL R 70 REMARK 465 ALA R 71 REMARK 465 TRP R 72 REMARK 465 GLY R 73 REMARK 465 VAL R 74 REMARK 465 CYS R 75 REMARK 465 ASN R 76 REMARK 465 HIS R 77 REMARK 465 ALA R 78 REMARK 465 PHE R 79 REMARK 465 HIS R 80 REMARK 465 PHE R 81 REMARK 465 HIS R 82 REMARK 465 CYS R 83 REMARK 465 ILE R 84 REMARK 465 SER R 85 REMARK 465 ARG R 86 REMARK 465 TRP R 87 REMARK 465 LEU R 88 REMARK 465 LYS R 89 REMARK 465 THR R 90 REMARK 465 ARG R 91 REMARK 465 GLN R 92 REMARK 465 VAL R 93 REMARK 465 CYS R 94 REMARK 465 PRO R 95 REMARK 465 LEU R 96 REMARK 465 ASP R 97 REMARK 465 ASN R 98 REMARK 465 ARG R 99 REMARK 465 GLU R 100 REMARK 465 TRP R 101 REMARK 465 GLU R 102 REMARK 465 PHE R 103 REMARK 465 GLN R 104 REMARK 465 LYS R 105 REMARK 465 TYR R 106 REMARK 465 VAL R 107 REMARK 465 GLY R 108 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 611 NZ LYS A 615 2.09 REMARK 500 O LEU A 226 OG SER A 230 2.14 REMARK 500 OG1 THR C 57 OE1 GLU C 59 2.17 REMARK 500 O GLY A 183 OG SER A 187 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 81 -4.75 69.05 REMARK 500 LEU A 123 -8.63 72.47 REMARK 500 GLU A 134 75.44 52.71 REMARK 500 VAL A 271 -61.80 -125.34 REMARK 500 SER A 402 -7.08 -59.92 REMARK 500 THR A 526 51.71 36.71 REMARK 500 LYS A 621 63.89 60.33 REMARK 500 HIS B 10 -123.39 59.24 REMARK 500 ALA B 71 78.22 -161.91 REMARK 500 ARG B 90 50.57 -92.34 REMARK 500 ASN C 55 31.59 -93.23 REMARK 500 LEU L 177 98.83 -66.40 REMARK 500 PRO L 265 47.95 -89.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN L 500 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS L 356 SG REMARK 620 2 CYS L 358 SG 109.6 REMARK 620 3 CYS L 400 SG 112.6 110.6 REMARK 620 4 CYS L 404 SG 107.9 110.4 105.6 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-25128 RELATED DB: EMDB REMARK 900 STRUCTURE OF XENOPUS LAEVIS CRL2LRR1 (STATE 2) DBREF1 7SHL A 1 745 UNP A0A1L8FVB6_XENLA DBREF2 7SHL A A0A1L8FVB6 1 745 DBREF 7SHL B 1 119 UNP Q6PHL7 Q6PHL7_XENLA 1 119 DBREF 7SHL C 1 112 UNP Q6PHW7 Q6PHW7_XENLA 1 112 DBREF 7SHL L 1 418 UNP A4QNS4 A4QNS4_XENLA 1 418 DBREF1 7SHL R 1 108 UNP A0A1L8GNG7_XENLA DBREF2 7SHL R A0A1L8GNG7 23 130 SEQADV 7SHL ASN L 281 UNP A4QNS4 LYS 281 CONFLICT SEQADV 7SHL ILE L 370 UNP A4QNS4 VAL 370 CONFLICT SEQRES 1 A 745 MET SER LEU LYS PRO ARG VAL VAL ASP PHE ASP GLU THR SEQRES 2 A 745 TRP ASN LYS LEU LEU THR THR ILE LYS ALA VAL VAL MET SEQRES 3 A 745 LEU ASP TYR VAL GLU ARG ALA THR TRP ASN ASP ARG PHE SEQRES 4 A 745 SER ASP ILE TYR ALA LEU CYS VAL ALA TYR PRO GLU PRO SEQRES 5 A 745 LEU GLY GLU ARG LEU TYR THR GLU THR LYS ILE PHE LEU SEQRES 6 A 745 GLU ASN HIS VAL GLN GLN LEU HIS THR ARG VAL LEU ASP SEQRES 7 A 745 SER ALA GLU GLN VAL LEU VAL MET TYR PHE ARG TYR TRP SEQRES 8 A 745 GLU GLU TYR SER ARG GLY ALA ASP TYR MET ASP CYS LEU SEQRES 9 A 745 TYR ARG TYR LEU ASN THR GLN TYR ILE LYS LYS ASN LYS SEQRES 10 A 745 LEU THR GLU ALA ASP LEU GLN TYR GLY TYR GLY GLY VAL SEQRES 11 A 745 ASP MET ASN GLU PRO LEU MET GLU ILE GLY GLU LEU ALA SEQRES 12 A 745 LEU ASP LEU TRP ARG LYS LEU MET ILE GLU PRO LEU GLN SEQRES 13 A 745 ASP THR LEU LEU ILE MET LEU LEU ARG GLU ILE LYS ARG SEQRES 14 A 745 ASP ARG CYS GLY GLU ASP PRO ASN GLN LYS VAL ILE HIS SEQRES 15 A 745 GLY VAL ILE ASN SER PHE VAL HIS VAL GLU GLN TYR LYS SEQRES 16 A 745 LYS LYS PHE PRO LEU LYS PHE TYR GLN GLU ILE PHE GLU SEQRES 17 A 745 SER PRO PHE LEU ALA GLU THR GLY GLU TYR TYR LYS GLN SEQRES 18 A 745 GLU ALA SER ASN LEU LEU GLN GLU SER ASN CYS SER GLN SEQRES 19 A 745 TYR MET GLU LYS ILE LEU GLY ARG LEU LYS ASP GLU GLU SEQRES 20 A 745 ILE ARG CYS ARG LYS TYR LEU HIS PRO SER SER TYR ASN SEQRES 21 A 745 LYS VAL ILE HIS GLU CYS GLN GLN ARG MET VAL ALA ASP SEQRES 22 A 745 HIS LEU GLN PHE LEU HIS ALA GLU CYS HIS ASN ILE ILE SEQRES 23 A 745 ARG GLN GLU ARG ARG ASN ASP MET ALA ASN MET TYR THR SEQRES 24 A 745 LEU LEU ARG ALA VAL SER SER GLY LEU PRO HIS MET ILE SEQRES 25 A 745 GLN GLU LEU GLN ASN HIS ILE HIS ASP GLU GLY LEU ARG SEQRES 26 A 745 ALA ILE SER ASN LEU SER GLN GLU ASN MET PRO THR GLN SEQRES 27 A 745 PHE VAL GLU SER VAL LEU GLU VAL HIS SER LYS PHE VAL SEQRES 28 A 745 GLN LEU VAL ASN CYS VAL LEU ASN GLY ASP GLN HIS PHE SEQRES 29 A 745 MET SER ALA LEU ASP LYS ALA LEU THR CYS VAL VAL ASN SEQRES 30 A 745 TYR ARG GLU PRO LYS SER VAL CYS LYS ALA PRO GLU LEU SEQRES 31 A 745 LEU ALA LYS TYR CYS ASP ASN MET LEU LYS LYS SER ALA SEQRES 32 A 745 LYS GLY MET THR GLU ASN GLU VAL GLU ASP LYS LEU THR SEQRES 33 A 745 SER PHE ILE THR VAL PHE LYS TYR ILE ASP ASP LYS ASP SEQRES 34 A 745 VAL PHE GLN LYS PHE TYR ALA ARG MET LEU ALA LYS ARG SEQRES 35 A 745 LEU ILE HIS GLY LEU SER MET SER MET ASP SER GLU GLU SEQRES 36 A 745 THR MET ILE ASN LYS LEU LYS GLN ALA CYS GLY TYR GLU SEQRES 37 A 745 PHE THR SER LYS LEU HIS ARG MET TYR THR ASP MET SER SEQRES 38 A 745 VAL SER ALA ASP LEU ASN ASN LYS PHE ASN ASN PHE ILE SEQRES 39 A 745 LYS SER GLN ASP THR VAL ILE ASP LEU GLY ILE SER PHE SEQRES 40 A 745 GLN ILE TYR VAL LEU GLN ALA GLY ALA TRP PRO LEU THR SEQRES 41 A 745 GLN ALA PRO SER SER THR PHE ALA ILE PRO GLN GLU LEU SEQRES 42 A 745 GLU LYS SER VAL GLN MET PHE GLU LEU PHE TYR ASN GLN SEQRES 43 A 745 HIS PHE SER GLY ARG LYS LEU THR TRP LEU HIS TYR LEU SEQRES 44 A 745 CYS THR GLY GLU VAL LYS MET ASN TYR LEU CYS LYS PRO SEQRES 45 A 745 TYR VAL ALA MET VAL THR THR TYR GLN MET ALA VAL LEU SEQRES 46 A 745 LEU ALA PHE ASN ASN SER GLU ILE ILE THR TYR LYS GLU SEQRES 47 A 745 LEU GLN ASP SER THR GLN MET ASN GLU LYS GLU LEU THR SEQRES 48 A 745 LYS THR ILE LYS SER LEU LEU ASP VAL LYS MET ILE ASN SEQRES 49 A 745 HIS ASP SER ASP LYS GLU ASP ILE GLU GLY GLU SER THR SEQRES 50 A 745 PHE SER LEU ASN MET ASN PHE SER SER LYS ARG THR LYS SEQRES 51 A 745 PHE LYS ILE THR THR PRO MET GLN LYS ASP THR PRO GLN SEQRES 52 A 745 GLU VAL GLU GLN THR ARG SER ALA VAL ASP GLU ASP ARG SEQRES 53 A 745 LYS MET TYR LEU GLN ALA ALA ILE VAL ARG ILE MET LYS SEQRES 54 A 745 ALA ARG LYS VAL LEU ARG HIS ASN ALA LEU ILE GLN GLU SEQRES 55 A 745 VAL ILE SER GLN SER ARG ALA ARG PHE ASN PRO SER ILE SEQRES 56 A 745 SER MET ILE LYS LYS CYS ILE GLU VAL LEU ILE ASP LYS SEQRES 57 A 745 GLN TYR ILE GLU ARG SER GLN ALA SER ALA ASP GLU TYR SEQRES 58 A 745 SER TYR VAL ALA SEQRES 1 B 119 MET ASP VAL PHE LEU MET ILE ARG HIS HIS LYS THR THR SEQRES 2 B 119 ILE PHE THR ASP ALA LYS GLU ASN THR THR VAL TYR GLU SEQRES 3 B 119 LEU LYS ARG ILE VAL GLU GLY ILE LEU LYS ARG PRO PRO SEQRES 4 B 119 GLU ASP GLN LYS LEU TYR LYS ASP ASP GLN LEU LEU ASP SEQRES 5 B 119 ASP ASN LYS THR LEU GLY ASP CYS GLY PHE THR SER GLN SEQRES 6 B 119 THR ALA ARG PRO GLN ALA PRO ALA THR VAL GLY LEU ALA SEQRES 7 B 119 PHE ARG SER SER GLY ASP SER PHE GLU PRO LEU ARG VAL SEQRES 8 B 119 GLU PRO PHE SER SER PRO PRO GLU LEU PRO ASP VAL MET SEQRES 9 B 119 LYS PRO GLN GLU THR SER GLY SER ALA ASN GLU GLN ALA SEQRES 10 B 119 VAL GLN SEQRES 1 C 112 MET ASP GLY GLU GLU LYS THR TYR GLY GLY CYS GLU GLY SEQRES 2 C 112 PRO ASP ALA MET TYR VAL LYS LEU ILE SER SER ASP GLY SEQRES 3 C 112 HIS GLU PHE ILE VAL LYS ARG GLU HIS ALA LEU THR SER SEQRES 4 C 112 GLY THR ILE LYS ALA MET LEU SER GLY PRO GLY GLN PHE SEQRES 5 C 112 ALA GLU ASN GLU THR ASN GLU VAL ASN PHE ARG GLU ILE SEQRES 6 C 112 PRO SER HIS VAL LEU SER LYS VAL CYS MET TYR PHE THR SEQRES 7 C 112 TYR LYS VAL ARG TYR THR ASN SER SER THR GLU ILE PRO SEQRES 8 C 112 GLU PHE PRO ILE ALA PRO GLU ILE ALA LEU GLU LEU LEU SEQRES 9 C 112 MET ALA ALA ASN PHE LEU ASP CYS SEQRES 1 L 418 MET LYS LEU GLN CYS GLU VAL GLU VAL ILE ASN ARG MET SEQRES 2 L 418 LEU PRO THR PHE GLY LEU LYS ASN ARG GLY LYS GLY THR SEQRES 3 L 418 ARG ALA VAL LEU SER VAL GLY ARG GLN GLU GLY LYS ARG SEQRES 4 L 418 GLY ALA ALA TYR LEU MET ILE CYS THR LEU LYS ASP LYS SEQRES 5 L 418 SER GLY SER ARG TYR LYS LEU GLU ASN ASN ILE GLU GLN SEQRES 6 L 418 LEU PHE THR ARG PHE VAL GLY GLU GLY LYS ALA THR LEU SEQRES 7 L 418 ARG LEU LYS GLU PRO ALA LEU ASP ILE CYS LEU SER LYS SEQRES 8 L 418 ALA GLU ILE CYS GLY LEU ARG ASN PHE ILE SER THR VAL SEQRES 9 L 418 GLY LEU ALA ASN LYS GLY THR ASP ILE GLY THR VAL SER SEQRES 10 L 418 LEU PRO ARG LEU THR PRO ALA LYS THR SER GLU ILE GLU SEQRES 11 L 418 LYS PRO ARG SER LYS LEU PHE ILE THR THR LYS LYS ASP SEQRES 12 L 418 TYR PRO ILE THR LYS SER PHE PRO TYR SER LEU GLU HIS SEQRES 13 L 418 LEU GLN VAL SER TYR CYS LYS LEU ALA ARG VAL ASP MET SEQRES 14 L 418 ARG MET LEU CYS LEU LYS LYS LEU GLN LYS LEU ASP LEU SEQRES 15 L 418 SER ASN ASN HIS ILE LYS LYS LEU PRO LYS THR ILE GLY SEQRES 16 L 418 ASP LEU VAL CYS LEU GLN GLU LEU ILE LEU ASN HIS ASN SEQRES 17 L 418 PHE LEU GLU SER PHE GLU VAL VAL LEU CYS SER THR THR SEQRES 18 L 418 LEU ARG ASP THR LEU LYS SER LEU ASP LEU SER ALA ASN SEQRES 19 L 418 LYS LEU LYS ALA LEU PRO VAL GLN ILE CYS ASN PHE LYS SEQRES 20 L 418 GLU LEU VAL SER LEU LYS LEU ASP GLU ASN GLU LEU LEU SEQRES 21 L 418 GLN LEU PRO PHE PRO ILE GLY GLN LEU SER LYS LEU ARG SEQRES 22 L 418 PHE LEU SER ALA THR LYS ASN ASN LEU GLN CYS LEU PRO SEQRES 23 L 418 ASN THR PHE LYS LYS LEU THR LEU GLU ASN LEU ASP LEU SEQRES 24 L 418 PHE GLY ASN PRO PHE MET GLN ALA THR PRO LEU VAL PRO SEQRES 25 L 418 ASP ILE GLN LEU LYS ILE PRO LEU PRO LEU LEU GLU THR SEQRES 26 L 418 ALA ALA ARG ALA THR LEU LYS TYR ARG ILE PRO TYR GLY SEQRES 27 L 418 PRO HIS LEU ILE PRO ALA THR LEU CYS GLN ASP LEU SER SEQRES 28 L 418 LEU ALA LYS THR CYS ASP CYS GLY LEU PRO CYS LEU ASN SEQRES 29 L 418 SER PHE ILE GLN THR ILE VAL LEU MET ASN LEU HIS GLN SEQRES 30 L 418 VAL SER GLN THR VAL VAL LEU VAL ASP THR MET GLY GLY SEQRES 31 L 418 THR ASP GLY PRO ILE VAL CYS TYR PHE CYS SER LEU THR SEQRES 32 L 418 CYS TYR SER GLN PHE LEU ASP LYS TYR LEU GLN SER THR SEQRES 33 L 418 ARG VAL SEQRES 1 R 108 MET ALA ALA ALA MET ASP VAL ASP THR PRO SER GLY ALA SEQRES 2 R 108 ASN ASN SER ALA GLY LYS LYS ARG PHE GLU VAL LYS LYS SEQRES 3 R 108 TRP ASN ALA VAL ALA LEU TRP ALA TRP ASP ILE VAL VAL SEQRES 4 R 108 ASP ASN CYS ALA ILE CYS ARG ASN HIS ILE MET ASP LEU SEQRES 5 R 108 CYS ILE GLU CYS GLN ALA ASN GLN ALA SER ALA THR SER SEQRES 6 R 108 GLU GLU CYS THR VAL ALA TRP GLY VAL CYS ASN HIS ALA SEQRES 7 R 108 PHE HIS PHE HIS CYS ILE SER ARG TRP LEU LYS THR ARG SEQRES 8 R 108 GLN VAL CYS PRO LEU ASP ASN ARG GLU TRP GLU PHE GLN SEQRES 9 R 108 LYS TYR VAL GLY HET ZN L 500 1 HETNAM ZN ZINC ION FORMUL 6 ZN ZN 2+ HELIX 1 AA1 ASP A 9 MET A 26 1 18 HELIX 2 AA2 GLU A 31 VAL A 47 1 17 HELIX 3 AA3 LEU A 53 ASP A 78 1 26 HELIX 4 AA4 GLN A 82 TYR A 105 1 24 HELIX 5 AA5 TYR A 105 TYR A 112 1 8 HELIX 6 AA6 GLU A 138 MET A 151 1 14 HELIX 7 AA7 ILE A 152 PRO A 154 5 3 HELIX 8 AA8 LEU A 155 CYS A 172 1 18 HELIX 9 AA9 ASN A 177 GLN A 193 1 17 HELIX 10 AB1 LEU A 200 PHE A 207 1 8 HELIX 11 AB2 PHE A 207 SER A 230 1 24 HELIX 12 AB3 ASN A 231 LEU A 254 1 24 HELIX 13 AB4 HIS A 255 SER A 257 5 3 HELIX 14 AB5 SER A 258 CYS A 266 1 9 HELIX 15 AB6 HIS A 274 ARG A 287 1 14 HELIX 16 AB7 ARG A 290 VAL A 304 1 15 HELIX 17 AB8 SER A 306 SER A 328 1 23 HELIX 18 AB9 SER A 331 GLU A 333 5 3 HELIX 19 AC1 ASN A 334 VAL A 357 1 24 HELIX 20 AC2 ASP A 361 ASN A 377 1 17 HELIX 21 AC3 LYS A 386 LYS A 400 1 15 HELIX 22 AC4 THR A 407 TYR A 424 1 18 HELIX 23 AC5 ASP A 427 GLY A 446 1 20 HELIX 24 AC6 SER A 450 GLY A 466 1 17 HELIX 25 AC7 TYR A 467 PHE A 469 5 3 HELIX 26 AC8 THR A 470 GLN A 497 1 28 HELIX 27 AC9 PRO A 530 PHE A 548 1 19 HELIX 28 AD1 THR A 579 SER A 591 1 13 HELIX 29 AD2 TYR A 596 GLN A 604 1 9 HELIX 30 AD3 ASN A 606 VAL A 620 1 15 HELIX 31 AD4 THR B 23 LYS B 36 1 14 HELIX 32 AD5 ARG C 33 LEU C 37 1 5 HELIX 33 AD6 SER C 39 SER C 47 1 9 HELIX 34 AD7 PRO C 66 TYR C 83 1 18 HELIX 35 AD8 ILE C 99 ASP C 111 1 13 HELIX 36 AD9 ARG L 170 LEU L 174 5 5 HELIX 37 AE1 VAL L 215 THR L 225 5 11 HELIX 38 AE2 PRO L 240 PHE L 246 5 7 HELIX 39 AE3 PHE L 264 LEU L 269 5 6 HELIX 40 AE4 ASN L 287 LEU L 292 5 6 HELIX 41 AE5 PRO L 321 ARG L 334 1 14 HELIX 42 AE6 PRO L 343 LEU L 352 1 10 HELIX 43 AE7 LEU L 375 VAL L 378 1 4 HELIX 44 AE8 SER L 401 SER L 415 1 15 SHEET 1 AA1 4 SER A 506 GLN A 508 0 SHEET 2 AA1 4 GLU R 23 ASN R 28 1 O LYS R 25 N SER A 506 SHEET 3 AA1 4 THR A 561 LYS A 565 -1 N THR A 561 O ASN R 28 SHEET 4 AA1 4 VAL A 574 THR A 578 -1 O ALA A 575 N VAL A 564 SHEET 1 AA2 3 VAL A 511 GLN A 513 0 SHEET 2 AA2 3 ALA R 31 TRP R 35 1 O ALA R 31 N LEU A 512 SHEET 3 AA2 3 ARG A 551 TRP A 555 -1 N THR A 554 O LEU R 32 SHEET 1 AA3 3 ILE A 593 THR A 595 0 SHEET 2 AA3 3 THR A 637 LEU A 640 -1 O PHE A 638 N ILE A 594 SHEET 3 AA3 3 ILE A 623 HIS A 625 -1 N ASN A 624 O SER A 639 SHEET 1 AA4 7 LYS B 43 LEU B 44 0 SHEET 2 AA4 7 ALA B 73 ALA B 78 -1 O ALA B 78 N LYS B 43 SHEET 3 AA4 7 VAL B 3 ARG B 8 1 N MET B 6 O ALA B 73 SHEET 4 AA4 7 THR B 13 ALA B 18 -1 O THR B 16 N LEU B 5 SHEET 5 AA4 7 GLU C 28 LYS C 32 1 O ILE C 30 N THR B 13 SHEET 6 AA4 7 TYR C 18 ILE C 22 -1 N VAL C 19 O VAL C 31 SHEET 7 AA4 7 GLU C 59 ASN C 61 1 O VAL C 60 N ILE C 22 SHEET 1 AA5 6 LYS L 135 ILE L 138 0 SHEET 2 AA5 6 HIS L 156 VAL L 159 1 O GLN L 158 N ILE L 138 SHEET 3 AA5 6 LYS L 179 ASP L 181 1 O ASP L 181 N VAL L 159 SHEET 4 AA5 6 GLU L 202 ILE L 204 1 O GLU L 202 N LEU L 180 SHEET 5 AA5 6 SER L 228 ASP L 230 1 O SER L 228 N LEU L 203 SHEET 6 AA5 6 SER L 251 LYS L 253 1 O SER L 251 N LEU L 229 SHEET 1 AA6 3 PHE L 274 SER L 276 0 SHEET 2 AA6 3 LEU L 294 ASP L 298 1 O ASP L 298 N LEU L 275 SHEET 3 AA6 3 SER L 379 VAL L 383 1 O VAL L 383 N LEU L 297 SHEET 1 AA7 3 ASP L 313 ILE L 314 0 SHEET 2 AA7 3 ILE L 367 ASN L 374 -1 O GLN L 368 N ASP L 313 SHEET 3 AA7 3 ASP L 392 PHE L 399 -1 O ILE L 395 N VAL L 371 SHEET 1 AA8 2 LYS L 354 THR L 355 0 SHEET 2 AA8 2 PRO L 361 CYS L 362 -1 O CYS L 362 N LYS L 354 LINK SG CYS L 356 ZN ZN L 500 1555 1555 2.33 LINK SG CYS L 358 ZN ZN L 500 1555 1555 2.33 LINK SG CYS L 400 ZN ZN L 500 1555 1555 2.33 LINK SG CYS L 404 ZN ZN L 500 1555 1555 2.33 CISPEP 1 TYR A 49 PRO A 50 0 -2.15 CISPEP 2 ILE L 318 PRO L 319 0 -0.41 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000