HEADER TRANSFERASE/TRANSFERASE INHIBITOR 12-OCT-21 7SIA TITLE HIV INTEGRASE CORE DOMAIN IN COMPLEX WITH INHIBITOR 2-[2-(2-{3-[(4-{2- TITLE 2 [(3-{2-[3-(CARBOXYMETHYL)-5-METHYL-1-BENZOFURAN-2-YL]ETHYNYL}PHENYL) TITLE 3 FORMAMIDO]ETHYL}PIPERAZIN-1-YL)METHYL]PHENYL}ETHYNYL)-5-METHYL-1- TITLE 4 BENZOFURAN-3-YL]ACETIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTEGRASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CORE DOMAIN (UNP RESIDUES 50-212); COMPND 5 EC: 2.7.7.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_COMMON: HIV-1; SOURCE 4 ORGANISM_TAXID: 11676; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INHIBITOR, HIV INTEGRASE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.A.GORMAN,M.W.PARKER REVDAT 2 18-OCT-23 7SIA 1 REMARK REVDAT 1 19-OCT-22 7SIA 0 JRNL AUTH M.A.GORMAN,M.W.PARKER JRNL TITL HIV INTEGRASE CORE DOMAIN IN COMPLEX WITH INHIBITOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.18.2_3874: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.28 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 7.620 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 47732 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.240 REMARK 3 FREE R VALUE TEST SET COUNT : 3934 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.2800 - 5.0300 0.91 2208 197 0.2083 0.2536 REMARK 3 2 5.0200 - 3.9900 0.91 2282 204 0.1517 0.1828 REMARK 3 3 3.9900 - 3.4800 0.91 2206 188 0.1695 0.1972 REMARK 3 4 3.4800 - 3.1700 0.92 2296 196 0.1944 0.2590 REMARK 3 5 3.1700 - 2.9400 0.92 2210 200 0.2083 0.1938 REMARK 3 6 2.9400 - 2.7700 0.92 2275 206 0.2111 0.2748 REMARK 3 7 2.7700 - 2.6300 0.92 2255 203 0.2231 0.2448 REMARK 3 8 2.6300 - 2.5100 0.92 2236 194 0.2249 0.2605 REMARK 3 9 2.5100 - 2.4200 0.92 2253 189 0.2416 0.3282 REMARK 3 10 2.4200 - 2.3300 0.91 2246 208 0.2567 0.2620 REMARK 3 11 2.3300 - 2.2600 0.90 2228 189 0.2963 0.4058 REMARK 3 12 2.2600 - 2.2000 0.82 1945 175 0.4392 0.4228 REMARK 3 13 2.2000 - 2.1400 0.92 2342 207 0.2433 0.2719 REMARK 3 14 2.1400 - 2.0900 0.92 2213 202 0.2518 0.2702 REMARK 3 15 2.0900 - 2.0400 0.92 2249 192 0.2452 0.2470 REMARK 3 16 2.0400 - 1.9900 0.92 2269 206 0.2622 0.2982 REMARK 3 17 1.9900 - 1.9500 0.92 2262 204 0.3035 0.3065 REMARK 3 18 1.9500 - 1.9200 0.81 1958 173 0.4874 0.4753 REMARK 3 19 1.9200 - 1.8800 0.78 1954 170 0.5845 0.6093 REMARK 3 20 1.8800 - 1.8500 0.82 1970 172 0.3729 0.4059 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 2280 REMARK 3 ANGLE : 1.850 3086 REMARK 3 CHIRALITY : 0.066 343 REMARK 3 PLANARITY : 0.010 378 REMARK 3 DIHEDRAL : 15.107 304 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 11.1266 12.0226 -18.4032 REMARK 3 T TENSOR REMARK 3 T11: 0.0994 T22: 0.0844 REMARK 3 T33: 0.0288 T12: 0.0518 REMARK 3 T13: -0.0048 T23: -0.0107 REMARK 3 L TENSOR REMARK 3 L11: 1.0675 L22: 0.8422 REMARK 3 L33: 1.4882 L12: 0.7039 REMARK 3 L13: 0.5575 L23: 0.3796 REMARK 3 S TENSOR REMARK 3 S11: 0.0826 S12: -0.1171 S13: 0.1469 REMARK 3 S21: 0.1379 S22: -0.0613 S23: -0.0228 REMARK 3 S31: -0.0098 S32: -0.0928 S33: -0.0384 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: TLS, ANOMALOUS, INDIVIDUAL ISOTROPIC B REMARK 3 FACTORS REMARK 4 REMARK 4 7SIA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-OCT-21. REMARK 100 THE DEPOSITION ID IS D_1000260324. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.956 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47732 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 46.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.74900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 7RQ0 REMARK 200 REMARK 200 REMARK: BI-PYAMIND REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.2 M AMMONIUM SULFATE, 100 MM REMARK 280 POTASSIUM IODIDE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.50150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 104.25225 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 34.75075 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -91.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 50 REMARK 465 HIS A 51 REMARK 465 GLY A 52 REMARK 465 GLU A 53 REMARK 465 VAL A 54 REMARK 465 ASP A 55 REMARK 465 SER A 56 REMARK 465 TYR A 143 REMARK 465 ASN A 144 REMARK 465 PRO A 145 REMARK 465 GLN A 146 REMARK 465 SER A 147 REMARK 465 GLN A 148 REMARK 465 GLY A 149 REMARK 465 VAL A 150 REMARK 465 ILE A 151 REMARK 465 GLY A 190 REMARK 465 ILE A 191 REMARK 465 LYS A 211 REMARK 465 GLU A 212 REMARK 465 MET B 50 REMARK 465 HIS B 51 REMARK 465 GLY B 52 REMARK 465 GLU B 53 REMARK 465 VAL B 54 REMARK 465 ASP B 55 REMARK 465 PRO B 90 REMARK 465 ALA B 91 REMARK 465 GLU B 92 REMARK 465 TYR B 143 REMARK 465 ASN B 144 REMARK 465 PRO B 145 REMARK 465 GLN B 146 REMARK 465 SER B 147 REMARK 465 GLN B 148 REMARK 465 GLY B 149 REMARK 465 VAL B 150 REMARK 465 ILE B 151 REMARK 465 GLU B 209 REMARK 465 THR B 210 REMARK 465 LYS B 211 REMARK 465 GLU B 212 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 401 O HOH A 422 2.02 REMARK 500 NZ LYS A 186 O HOH A 401 2.09 REMARK 500 O LEU B 63 O HOH B 401 2.15 REMARK 500 OH TYR A 83 OE2 GLU A 85 2.17 REMARK 500 NE2 GLN B 62 O HOH B 402 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 131 O GLY A 192 4565 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS B 103 CD LYS B 103 CE 0.170 REMARK 500 GLU B 157 CG GLU B 157 CD -0.207 REMARK 500 GLU B 157 CD GLU B 157 OE1 -0.117 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 131 OE1 - CD - OE2 ANGL. DEV. = -12.6 DEGREES REMARK 500 MET A 154 CG - SD - CE ANGL. DEV. = 14.3 DEGREES REMARK 500 LYS B 103 CA - CB - CG ANGL. DEV. = 17.4 DEGREES REMARK 500 GLU B 157 OE1 - CD - OE2 ANGL. DEV. = -11.3 DEGREES REMARK 500 ARG B 187 NE - CZ - NH1 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG B 187 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 91 -120.63 -98.34 REMARK 500 GLU A 92 -52.62 -143.34 REMARK 500 THR A 93 -152.97 -147.53 REMARK 500 ILE A 141 52.57 -159.95 REMARK 500 GLU A 209 58.90 -92.55 REMARK 500 ARG B 187 -134.95 -110.55 REMARK 500 ILE B 191 -60.07 173.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MET A 154 ASN A 155 140.21 REMARK 500 ARG B 187 GLY B 190 140.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 187 0.09 SIDE CHAIN REMARK 500 TYR B 194 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 MET A 154 -13.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7RQ0 RELATED DB: PDB REMARK 900 HIV INTEGRASE CORE DOMAIN IN COMPLEX WITH 2-{2-[2-(3-{[4-(2-{[(3-{2- REMARK 900 [3-(CARBOXYMETHYL)-5-METHYL-1-BENZOFURAN-2-YL]ETHYNYL}PHENYL)METHYL] REMARK 900 AMINO}ETHYL)PIPERAZIN-1-YL]METHYL}PHENYL)ETHYNYL]-5-METHYL-1- REMARK 900 BENZOFURAN-3-YL}ACETIC ACID DBREF 7SIA A 50 212 UNP Q76353 Q76353_9HIV1 50 212 DBREF 7SIA B 50 212 UNP Q76353 Q76353_9HIV1 50 212 SEQADV 7SIA GLU A 53 UNP Q76353 GLN 53 CONFLICT SEQADV 7SIA SER A 56 UNP Q76353 CYS 56 CONFLICT SEQADV 7SIA GLU A 131 UNP Q76353 TRP 131 CONFLICT SEQADV 7SIA LYS A 185 UNP Q76353 PHE 185 CONFLICT SEQADV 7SIA GLU A 209 UNP Q76353 GLN 209 CONFLICT SEQADV 7SIA GLU B 53 UNP Q76353 GLN 53 CONFLICT SEQADV 7SIA SER B 56 UNP Q76353 CYS 56 CONFLICT SEQADV 7SIA GLU B 131 UNP Q76353 TRP 131 CONFLICT SEQADV 7SIA LYS B 185 UNP Q76353 PHE 185 CONFLICT SEQADV 7SIA GLU B 209 UNP Q76353 GLN 209 CONFLICT SEQRES 1 A 161 MET HIS GLY GLU VAL ASP SER SER PRO GLY ILE TRP GLN SEQRES 2 A 161 LEU ASP CYS THR HIS LEU GLU GLY LYS VAL ILE LEU VAL SEQRES 3 A 161 ALA VAL HIS VAL ALA SER GLY TYR ILE GLU ALA GLU VAL SEQRES 4 A 161 ILE PRO ALA GLU THR GLY GLN GLU THR ALA TYR PHE LEU SEQRES 5 A 161 LEU LYS LEU ALA GLY ARG TRP PRO VAL LYS THR VAL HIS SEQRES 6 A 161 THR ASP ASN GLY SER ASN PHE THR SER THR THR VAL LYS SEQRES 7 A 161 ALA ALA CYS GLU TRP ALA GLY ILE LYS GLN GLU PHE GLY SEQRES 8 A 161 ILE PRO TYR ASN PRO GLN SER GLN GLY VAL ILE GLU SER SEQRES 9 A 161 MET ASN LYS GLU LEU LYS LYS ILE ILE GLY GLN VAL ARG SEQRES 10 A 161 ASP GLN ALA GLU HIS LEU LYS THR ALA VAL GLN MET ALA SEQRES 11 A 161 VAL PHE ILE HIS ASN LYS LYS ARG GLY ILE GLY GLY TYR SEQRES 12 A 161 SER ALA GLY GLU ARG ILE VAL ASP ILE ILE ALA THR ASP SEQRES 13 A 161 ILE GLU THR LYS GLU SEQRES 1 B 161 MET HIS GLY GLU VAL ASP SER SER PRO GLY ILE TRP GLN SEQRES 2 B 161 LEU ASP CYS THR HIS LEU GLU GLY LYS VAL ILE LEU VAL SEQRES 3 B 161 ALA VAL HIS VAL ALA SER GLY TYR ILE GLU ALA GLU VAL SEQRES 4 B 161 ILE PRO ALA GLU THR GLY GLN GLU THR ALA TYR PHE LEU SEQRES 5 B 161 LEU LYS LEU ALA GLY ARG TRP PRO VAL LYS THR VAL HIS SEQRES 6 B 161 THR ASP ASN GLY SER ASN PHE THR SER THR THR VAL LYS SEQRES 7 B 161 ALA ALA CYS GLU TRP ALA GLY ILE LYS GLN GLU PHE GLY SEQRES 8 B 161 ILE PRO TYR ASN PRO GLN SER GLN GLY VAL ILE GLU SER SEQRES 9 B 161 MET ASN LYS GLU LEU LYS LYS ILE ILE GLY GLN VAL ARG SEQRES 10 B 161 ASP GLN ALA GLU HIS LEU LYS THR ALA VAL GLN MET ALA SEQRES 11 B 161 VAL PHE ILE HIS ASN LYS LYS ARG GLY ILE GLY GLY TYR SEQRES 12 B 161 SER ALA GLY GLU ARG ILE VAL ASP ILE ILE ALA THR ASP SEQRES 13 B 161 ILE GLU THR LYS GLU HET 9I4 A 301 95 HET IOD A 302 1 HET IOD A 303 1 HET SO4 A 304 5 HET SO4 A 305 5 HET IOD B 301 1 HET IOD B 302 1 HET SO4 B 303 5 HET SO4 B 304 5 HET SO4 B 305 5 HETNAM 9I4 (2-{[3-({4-[2-(3-{[3-(CARBOXYMETHYL)-5-METHYL-1- HETNAM 2 9I4 BENZOFURAN-2-YL]ETHYNYL}BENZAMIDO)ETHYL]PIPERAZIN-1- HETNAM 3 9I4 YL}METHYL)PHENYL]ETHYNYL}-5-METHYL-1-BENZOFURAN-3-YL) HETNAM 4 9I4 ACETIC ACID HETNAM IOD IODIDE ION HETNAM SO4 SULFATE ION FORMUL 3 9I4 C46 H41 N3 O7 FORMUL 4 IOD 4(I 1-) FORMUL 6 SO4 5(O4 S 2-) FORMUL 13 HOH *45(H2 O) HELIX 1 AA1 GLY A 94 TRP A 108 1 15 HELIX 2 AA2 GLY A 118 THR A 122 5 5 HELIX 3 AA3 SER A 123 GLY A 134 1 12 HELIX 4 AA4 SER A 153 ARG A 166 1 14 HELIX 5 AA5 ASP A 167 ALA A 169 5 3 HELIX 6 AA6 HIS A 171 LYS A 186 1 16 HELIX 7 AA7 SER A 195 GLU A 209 1 15 HELIX 8 AA8 GLY B 94 GLY B 106 1 13 HELIX 9 AA9 GLY B 118 THR B 122 5 5 HELIX 10 AB1 SER B 123 GLY B 134 1 12 HELIX 11 AB2 SER B 153 ARG B 166 1 14 HELIX 12 AB3 ASP B 167 ALA B 169 5 3 HELIX 13 AB4 HIS B 171 LYS B 186 1 16 HELIX 14 AB5 SER B 195 ILE B 208 1 14 SHEET 1 AA1 5 ILE A 84 ILE A 89 0 SHEET 2 AA1 5 LYS A 71 HIS A 78 -1 N ALA A 76 O GLU A 85 SHEET 3 AA1 5 ILE A 60 LEU A 68 -1 N ASP A 64 O VAL A 75 SHEET 4 AA1 5 THR A 112 THR A 115 1 O THR A 112 N TRP A 61 SHEET 5 AA1 5 LYS A 136 PHE A 139 1 O GLU A 138 N VAL A 113 SHEET 1 AA2 5 ILE B 84 ILE B 89 0 SHEET 2 AA2 5 LYS B 71 HIS B 78 -1 N ALA B 76 O GLU B 85 SHEET 3 AA2 5 ILE B 60 LEU B 68 -1 N THR B 66 O ILE B 73 SHEET 4 AA2 5 THR B 112 THR B 115 1 O HIS B 114 N LEU B 63 SHEET 5 AA2 5 LYS B 136 PHE B 139 1 O GLU B 138 N VAL B 113 CRYST1 46.277 46.277 139.003 90.00 90.00 90.00 P 43 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021609 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021609 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007194 0.00000