data_7SKX # _entry.id 7SKX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.359 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7SKX pdb_00007skx 10.2210/pdb7skx/pdb WWPDB D_1000260656 ? ? EMDB EMD-25185 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type EMDB 'Ab initio structure of proteinase K from electron-counted MicroED data' EMD-25185 'associated EM volume' EMDB 'Ab initio structure of triclinic lysozyme from electron-counted MicroED data' EMD-25184 'other EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7SKX _pdbx_database_status.recvd_initial_deposition_date 2021-10-21 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Martynowycz, M.W.' 1 0000-0003-0055-230X 'Clabbers, M.T.B.' 2 0000-0002-5466-6508 'Hattne, J.' 3 0000-0002-8936-0912 'Gonen, T.' 4 0000-0002-9254-4069 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Nat.Methods _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1548-7105 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 19 _citation.language ? _citation.page_first 724 _citation.page_last 729 _citation.title 'Ab initio phasing macromolecular structures using electron-counted MicroED data.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41592-022-01485-4 _citation.pdbx_database_id_PubMed 35637302 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Martynowycz, M.W.' 1 ? primary 'Clabbers, M.T.B.' 2 ? primary 'Hattne, J.' 3 ? primary 'Gonen, T.' 4 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 7SKX _cell.details ? _cell.formula_units_Z ? _cell.length_a 67.080 _cell.length_a_esd ? _cell.length_b 67.080 _cell.length_b_esd ? _cell.length_c 106.780 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7SKX _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Proteinase K' 28930.783 1 3.4.21.64 ? ? ? 2 non-polymer syn '5-amino-2,4,6-triiodobenzene-1,3-dicarboxylic acid' 558.835 2 ? ? ? ? 3 non-polymer syn 'CALCIUM ION' 40.078 5 ? ? ? ? 4 water nat water 18.015 234 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Endopeptidase K, Tritirachium alkaline proteinase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;AAQTNAPWGLARISSTSPGTSTYYYDESAGQGSCVYVIDTGIEASHPEFEGRAQMVKTYYYSSRDGNGHGTHCAGTVGSR TYGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGGYSSSVNSAAARLQSSGVMVAVAAG NNNADARNYSPASEPSVCTVGASDRYDRRSSFSNYGSVLDIFGPGTSILSTWIGGSTRSISGTSMATPHVAGLAAYLMTL GKTTAASACRYIADTANKGDLSNIPFGTVNLLAYNNYQA ; _entity_poly.pdbx_seq_one_letter_code_can ;AAQTNAPWGLARISSTSPGTSTYYYDESAGQGSCVYVIDTGIEASHPEFEGRAQMVKTYYYSSRDGNGHGTHCAGTVGSR TYGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGGYSSSVNSAAARLQSSGVMVAVAAG NNNADARNYSPASEPSVCTVGASDRYDRRSSFSNYGSVLDIFGPGTSILSTWIGGSTRSISGTSMATPHVAGLAAYLMTL GKTTAASACRYIADTANKGDLSNIPFGTVNLLAYNNYQA ; _entity_poly.pdbx_strand_id C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 ALA n 1 3 GLN n 1 4 THR n 1 5 ASN n 1 6 ALA n 1 7 PRO n 1 8 TRP n 1 9 GLY n 1 10 LEU n 1 11 ALA n 1 12 ARG n 1 13 ILE n 1 14 SER n 1 15 SER n 1 16 THR n 1 17 SER n 1 18 PRO n 1 19 GLY n 1 20 THR n 1 21 SER n 1 22 THR n 1 23 TYR n 1 24 TYR n 1 25 TYR n 1 26 ASP n 1 27 GLU n 1 28 SER n 1 29 ALA n 1 30 GLY n 1 31 GLN n 1 32 GLY n 1 33 SER n 1 34 CYS n 1 35 VAL n 1 36 TYR n 1 37 VAL n 1 38 ILE n 1 39 ASP n 1 40 THR n 1 41 GLY n 1 42 ILE n 1 43 GLU n 1 44 ALA n 1 45 SER n 1 46 HIS n 1 47 PRO n 1 48 GLU n 1 49 PHE n 1 50 GLU n 1 51 GLY n 1 52 ARG n 1 53 ALA n 1 54 GLN n 1 55 MET n 1 56 VAL n 1 57 LYS n 1 58 THR n 1 59 TYR n 1 60 TYR n 1 61 TYR n 1 62 SER n 1 63 SER n 1 64 ARG n 1 65 ASP n 1 66 GLY n 1 67 ASN n 1 68 GLY n 1 69 HIS n 1 70 GLY n 1 71 THR n 1 72 HIS n 1 73 CYS n 1 74 ALA n 1 75 GLY n 1 76 THR n 1 77 VAL n 1 78 GLY n 1 79 SER n 1 80 ARG n 1 81 THR n 1 82 TYR n 1 83 GLY n 1 84 VAL n 1 85 ALA n 1 86 LYS n 1 87 LYS n 1 88 THR n 1 89 GLN n 1 90 LEU n 1 91 PHE n 1 92 GLY n 1 93 VAL n 1 94 LYS n 1 95 VAL n 1 96 LEU n 1 97 ASP n 1 98 ASP n 1 99 ASN n 1 100 GLY n 1 101 SER n 1 102 GLY n 1 103 GLN n 1 104 TYR n 1 105 SER n 1 106 THR n 1 107 ILE n 1 108 ILE n 1 109 ALA n 1 110 GLY n 1 111 MET n 1 112 ASP n 1 113 PHE n 1 114 VAL n 1 115 ALA n 1 116 SER n 1 117 ASP n 1 118 LYS n 1 119 ASN n 1 120 ASN n 1 121 ARG n 1 122 ASN n 1 123 CYS n 1 124 PRO n 1 125 LYS n 1 126 GLY n 1 127 VAL n 1 128 VAL n 1 129 ALA n 1 130 SER n 1 131 LEU n 1 132 SER n 1 133 LEU n 1 134 GLY n 1 135 GLY n 1 136 GLY n 1 137 TYR n 1 138 SER n 1 139 SER n 1 140 SER n 1 141 VAL n 1 142 ASN n 1 143 SER n 1 144 ALA n 1 145 ALA n 1 146 ALA n 1 147 ARG n 1 148 LEU n 1 149 GLN n 1 150 SER n 1 151 SER n 1 152 GLY n 1 153 VAL n 1 154 MET n 1 155 VAL n 1 156 ALA n 1 157 VAL n 1 158 ALA n 1 159 ALA n 1 160 GLY n 1 161 ASN n 1 162 ASN n 1 163 ASN n 1 164 ALA n 1 165 ASP n 1 166 ALA n 1 167 ARG n 1 168 ASN n 1 169 TYR n 1 170 SER n 1 171 PRO n 1 172 ALA n 1 173 SER n 1 174 GLU n 1 175 PRO n 1 176 SER n 1 177 VAL n 1 178 CYS n 1 179 THR n 1 180 VAL n 1 181 GLY n 1 182 ALA n 1 183 SER n 1 184 ASP n 1 185 ARG n 1 186 TYR n 1 187 ASP n 1 188 ARG n 1 189 ARG n 1 190 SER n 1 191 SER n 1 192 PHE n 1 193 SER n 1 194 ASN n 1 195 TYR n 1 196 GLY n 1 197 SER n 1 198 VAL n 1 199 LEU n 1 200 ASP n 1 201 ILE n 1 202 PHE n 1 203 GLY n 1 204 PRO n 1 205 GLY n 1 206 THR n 1 207 SER n 1 208 ILE n 1 209 LEU n 1 210 SER n 1 211 THR n 1 212 TRP n 1 213 ILE n 1 214 GLY n 1 215 GLY n 1 216 SER n 1 217 THR n 1 218 ARG n 1 219 SER n 1 220 ILE n 1 221 SER n 1 222 GLY n 1 223 THR n 1 224 SER n 1 225 MET n 1 226 ALA n 1 227 THR n 1 228 PRO n 1 229 HIS n 1 230 VAL n 1 231 ALA n 1 232 GLY n 1 233 LEU n 1 234 ALA n 1 235 ALA n 1 236 TYR n 1 237 LEU n 1 238 MET n 1 239 THR n 1 240 LEU n 1 241 GLY n 1 242 LYS n 1 243 THR n 1 244 THR n 1 245 ALA n 1 246 ALA n 1 247 SER n 1 248 ALA n 1 249 CYS n 1 250 ARG n 1 251 TYR n 1 252 ILE n 1 253 ALA n 1 254 ASP n 1 255 THR n 1 256 ALA n 1 257 ASN n 1 258 LYS n 1 259 GLY n 1 260 ASP n 1 261 LEU n 1 262 SER n 1 263 ASN n 1 264 ILE n 1 265 PRO n 1 266 PHE n 1 267 GLY n 1 268 THR n 1 269 VAL n 1 270 ASN n 1 271 LEU n 1 272 LEU n 1 273 ALA n 1 274 TYR n 1 275 ASN n 1 276 ASN n 1 277 TYR n 1 278 GLN n 1 279 ALA n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name 'Engyodontium album, Tritirachium album' _entity_src_nat.pdbx_organism_scientific 'Parengyodontium album' _entity_src_nat.pdbx_ncbi_taxonomy_id 37998 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PRTK_PARAQ _struct_ref.pdbx_db_accession P06873 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;AAQTNAPWGLARISSTSPGTSTYYYDESAGQGSCVYVIDTGIEASHPEFEGRAQMVKTYYYSSRDGNGHGTHCAGTVGSR TYGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGGYSSSVNSAAARLQSSGVMVAVAAG NNNADARNYSPASEPSVCTVGASDRYDRRSSFSNYGSVLDIFGPGTSILSTWIGGSTRSISGTSMATPHVAGLAAYLMTL GKTTAASACRYIADTANKGDLSNIPFGTVNLLAYNNYQA ; _struct_ref.pdbx_align_begin 106 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7SKX _struct_ref_seq.pdbx_strand_id C _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 279 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P06873 _struct_ref_seq.db_align_beg 106 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 384 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 279 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 I3C non-polymer . '5-amino-2,4,6-triiodobenzene-1,3-dicarboxylic acid' '5-Amino-2,4,6-triiodoisophthalic acid' 'C8 H4 I3 N O4' 558.835 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7SKX _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON CRYSTALLOGRAPHY' _exptl.method_details ? # _refine.aniso_B[1][1] -0.470 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][2] -0.470 _refine.aniso_B[2][3] 0.000 _refine.aniso_B[3][3] 0.939 _refine.B_iso_max ? _refine.B_iso_mean 14.137 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.969 _refine.correlation_coeff_Fo_to_Fc_free 0.950 _refine.details 'Hydrogens have been added in their riding positions' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7SKX _refine.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.500 _refine.ls_d_res_low 43.386 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 39303 _refine.ls_number_reflns_R_free 2001 _refine.ls_number_reflns_R_work 37302 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.848 _refine.ls_percent_reflns_R_free 5.091 _refine.ls_R_factor_all 0.152 _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free 0.2046 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1495 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'MASK BULK SOLVENT' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details Random _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.085 _refine.pdbx_overall_ESU_R_Free 0.078 _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 4.529 _refine.overall_SU_ML 0.067 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.500 _refine_hist.d_res_low 43.386 _refine_hist.number_atoms_solvent 234 _refine_hist.number_atoms_total 2300 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 2029 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 37 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON CRYSTALLOGRAPHY' ? 0.016 0.013 2102 ? r_bond_refined_d ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.001 0.018 1858 ? r_bond_other_d ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 1.691 1.637 2862 ? r_angle_refined_deg ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 1.721 1.577 4266 ? r_angle_other_deg ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 6.758 5.000 278 ? r_dihedral_angle_1_deg ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 34.941 21.895 95 ? r_dihedral_angle_2_deg ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 12.286 15.000 299 ? r_dihedral_angle_3_deg ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 21.837 15.000 12 ? r_dihedral_angle_4_deg ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.083 0.200 279 ? r_chiral_restr ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.009 0.020 2497 ? r_gen_planes_refined ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.001 0.020 499 ? r_gen_planes_other ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.221 0.200 554 ? r_nbd_refined ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.202 0.200 2047 ? r_symmetry_nbd_other ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.187 0.200 1155 ? r_nbtor_refined ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.090 0.200 1002 ? r_symmetry_nbtor_other ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.179 0.200 218 ? r_xyhbond_nbd_refined ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.098 0.200 1 ? r_symmetry_xyhbond_nbd_other ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.039 0.200 4 ? r_metal_ion_refined ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.333 0.200 20 ? r_symmetry_nbd_refined ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.239 0.200 42 ? r_nbd_other ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.405 0.200 17 ? r_symmetry_xyhbond_nbd_refined ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.127 0.200 2 ? r_xyhbond_nbd_other ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 1.877 1.163 1115 ? r_mcbond_it ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 1.858 1.160 1114 ? r_mcbond_other ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 2.350 1.753 1392 ? r_mcangle_it ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 2.350 1.757 1393 ? r_mcangle_other ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 3.624 1.701 987 ? r_scbond_it ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 3.589 1.683 981 ? r_scbond_other ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 4.493 2.398 1470 ? r_scangle_it ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 4.491 2.399 1471 ? r_scangle_other ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 5.137 17.264 2729 ? r_lrange_it ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 4.919 16.634 2661 ? r_lrange_other ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 2.679 3.000 3960 ? r_rigid_bond_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'ELECTRON CRYSTALLOGRAPHY' 1.500 1.539 . . 156 2501 92.4817 . . . 0.323 . 0.331 . . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 1.539 1.581 . . 127 2673 99.4318 . . . 0.329 . 0.280 . . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 1.581 1.627 . . 141 2595 99.7085 . . . 0.303 . 0.238 . . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 1.627 1.677 . . 120 2538 99.4760 . . . 0.284 . 0.226 . . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 1.677 1.732 . . 141 2413 99.4161 . . . 0.254 . 0.192 . . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 1.732 1.793 . . 124 2360 99.4794 . . . 0.250 . 0.173 . . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 1.793 1.861 . . 134 2295 99.4269 . . . 0.237 . 0.154 . . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 1.861 1.937 . . 122 2187 99.4830 . . . 0.222 . 0.133 . . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 1.937 2.023 . . 114 2120 99.5100 . . . 0.206 . 0.127 . . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 2.023 2.121 . . 110 2034 99.4896 . . . 0.196 . 0.118 . . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 2.121 2.236 . . 90 1950 99.4637 . . . 0.165 . 0.106 . . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 2.236 2.372 . . 89 1847 99.1295 . . . 0.195 . 0.114 . . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 2.372 2.535 . . 91 1720 99.3963 . . . 0.189 . 0.118 . . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 2.535 2.738 . . 84 1627 99.4189 . . . 0.215 . 0.117 . . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 2.738 2.999 . . 89 1492 99.1844 . . . 0.174 . 0.123 . . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 2.999 3.353 . . 75 1370 99.3810 . . . 0.165 . 0.129 . . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 3.353 3.871 . . 60 1208 98.9852 . . . 0.150 . 0.130 . . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 3.871 4.740 . . 71 1039 98.9305 . . . 0.136 . 0.129 . . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 4.740 6.696 . . 43 834 99.2081 . . . 0.159 . 0.138 . . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 6.696 43.38 . . 20 499 96.8284 . . . 0.374 . 0.270 . . . . . . . . . . . # _struct.entry_id 7SKX _struct.title 'Ab initio structure of proteinase K from electron-counted MicroED data' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7SKX _struct_keywords.text Hydrolase _struct_keywords.pdbx_keywords HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PRO A 7 ? SER A 14 ? PRO C 7 SER C 14 1 ? 8 HELX_P HELX_P2 AA2 HIS A 46 ? GLU A 50 ? HIS C 46 GLU C 50 5 ? 5 HELX_P HELX_P3 AA3 GLY A 68 ? SER A 79 ? GLY C 68 SER C 79 1 ? 12 HELX_P HELX_P4 AA4 GLN A 103 ? LYS A 118 ? GLN C 103 LYS C 118 1 ? 16 HELX_P HELX_P5 AA5 ASN A 119 ? ARG A 121 ? ASN C 119 ARG C 121 5 ? 3 HELX_P HELX_P6 AA6 SER A 138 ? SER A 151 ? SER C 138 SER C 151 1 ? 14 HELX_P HELX_P7 AA7 ASP A 165 ? ARG A 167 ? ASP C 165 ARG C 167 5 ? 3 HELX_P HELX_P8 AA8 GLY A 222 ? LEU A 240 ? GLY C 222 LEU C 240 1 ? 19 HELX_P HELX_P9 AA9 SER A 247 ? THR A 255 ? SER C 247 THR C 255 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 34 SG ? ? ? 1_555 A CYS 123 SG ? ? C CYS 34 C CYS 123 1_555 ? ? ? ? ? ? ? 2.006 ? ? disulf2 disulf ? ? A CYS 178 SG ? ? ? 1_555 A CYS 249 SG ? ? C CYS 178 C CYS 249 1_555 ? ? ? ? ? ? ? 2.123 ? ? metalc1 metalc ? ? A THR 16 O ? ? ? 1_555 E CA . CA ? ? C THR 16 C CA 304 1_555 ? ? ? ? ? ? ? 2.384 ? ? metalc2 metalc ? ? A PRO 175 O ? ? ? 1_555 D CA . CA ? ? C PRO 175 C CA 303 1_555 ? ? ? ? ? ? ? 2.360 ? ? metalc3 metalc ? ? A VAL 177 O ? ? ? 1_555 D CA . CA ? ? C VAL 177 C CA 303 1_555 ? ? ? ? ? ? ? 2.384 ? ? metalc4 metalc ? ? A ASP 200 OD1 ? ? ? 1_555 D CA . CA ? ? C ASP 200 C CA 303 1_555 ? ? ? ? ? ? ? 2.596 ? ? metalc5 metalc ? ? A ASP 200 OD2 ? ? ? 1_555 D CA . CA ? ? C ASP 200 C CA 303 1_555 ? ? ? ? ? ? ? 2.468 ? ? metalc6 metalc ? ? A ASP 260 OD1 ? ? ? 1_555 E CA . CA ? ? C ASP 260 C CA 304 1_555 ? ? ? ? ? ? ? 2.503 ? ? metalc7 metalc ? ? A ASP 260 OD2 ? ? ? 1_555 E CA . CA ? ? C ASP 260 C CA 304 1_555 ? ? ? ? ? ? ? 2.456 ? ? metalc8 metalc ? ? D CA . CA ? ? ? 1_555 I HOH . O ? ? C CA 303 C HOH 419 1_555 ? ? ? ? ? ? ? 2.541 ? ? metalc9 metalc ? ? D CA . CA ? ? ? 1_555 I HOH . O ? ? C CA 303 C HOH 432 1_555 ? ? ? ? ? ? ? 2.510 ? ? metalc10 metalc ? ? D CA . CA ? ? ? 1_555 I HOH . O ? ? C CA 303 C HOH 458 1_555 ? ? ? ? ? ? ? 2.475 ? ? metalc11 metalc ? ? D CA . CA ? ? ? 1_555 I HOH . O ? ? C CA 303 C HOH 533 1_555 ? ? ? ? ? ? ? 2.549 ? ? metalc12 metalc ? ? E CA . CA ? ? ? 1_555 I HOH . O ? ? C CA 304 C HOH 506 1_555 ? ? ? ? ? ? ? 2.419 ? ? metalc13 metalc ? ? E CA . CA ? ? ? 1_555 I HOH . O ? ? C CA 304 C HOH 559 1_555 ? ? ? ? ? ? ? 2.427 ? ? metalc14 metalc ? ? E CA . CA ? ? ? 1_555 I HOH . O ? ? C CA 304 C HOH 561 1_555 ? ? ? ? ? ? ? 2.845 ? ? metalc15 metalc ? ? G CA . CA ? ? ? 1_555 I HOH . O ? ? C CA 306 C HOH 624 1_555 ? ? ? ? ? ? ? 3.146 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id SER _struct_mon_prot_cis.label_seq_id 170 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id SER _struct_mon_prot_cis.auth_seq_id 170 _struct_mon_prot_cis.auth_asym_id C _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 171 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 171 _struct_mon_prot_cis.pdbx_auth_asym_id_2 C _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 1.40 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 7 ? AA3 ? 2 ? AA4 ? 2 ? AA5 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA2 3 4 ? parallel AA2 4 5 ? parallel AA2 5 6 ? parallel AA2 6 7 ? parallel AA3 1 2 ? anti-parallel AA4 1 2 ? anti-parallel AA5 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ALA A 2 ? GLN A 3 ? ALA C 2 GLN C 3 AA1 2 TYR A 23 ? TYR A 24 ? TYR C 23 TYR C 24 AA2 1 ALA A 53 ? THR A 58 ? ALA C 53 THR C 58 AA2 2 GLN A 89 ? LYS A 94 ? GLN C 89 LYS C 94 AA2 3 SER A 33 ? ASP A 39 ? SER C 33 ASP C 39 AA2 4 GLY A 126 ? LEU A 131 ? GLY C 126 LEU C 131 AA2 5 VAL A 153 ? ALA A 158 ? VAL C 153 ALA C 158 AA2 6 CYS A 178 ? SER A 183 ? CYS C 178 SER C 183 AA2 7 ILE A 201 ? PRO A 204 ? ILE C 201 PRO C 204 AA3 1 GLY A 135 ? GLY A 136 ? GLY C 135 GLY C 136 AA3 2 TYR A 169 ? SER A 170 ? TYR C 169 SER C 170 AA4 1 ILE A 208 ? TRP A 212 ? ILE C 208 TRP C 212 AA4 2 SER A 216 ? ILE A 220 ? SER C 216 ILE C 220 AA5 1 ASN A 257 ? LYS A 258 ? ASN C 257 LYS C 258 AA5 2 LEU A 271 ? LEU A 272 ? LEU C 271 LEU C 272 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N GLN A 3 ? N GLN C 3 O TYR A 23 ? O TYR C 23 AA2 1 2 N VAL A 56 ? N VAL C 56 O GLY A 92 ? O GLY C 92 AA2 2 3 O PHE A 91 ? O PHE C 91 N VAL A 37 ? N VAL C 37 AA2 3 4 N TYR A 36 ? N TYR C 36 O SER A 130 ? O SER C 130 AA2 4 5 N LEU A 131 ? N LEU C 131 O ALA A 156 ? O ALA C 156 AA2 5 6 N VAL A 157 ? N VAL C 157 O VAL A 180 ? O VAL C 180 AA2 6 7 N GLY A 181 ? N GLY C 181 O ILE A 201 ? O ILE C 201 AA3 1 2 N GLY A 135 ? N GLY C 135 O SER A 170 ? O SER C 170 AA4 1 2 N ILE A 208 ? N ILE C 208 O ILE A 220 ? O ILE C 220 AA5 1 2 N ASN A 257 ? N ASN C 257 O LEU A 272 ? O LEU C 272 # _atom_sites.entry_id 7SKX _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.014908 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014908 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009365 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c C 2.310 20.844 1.020 10.208 1.589 0.569 0.865 51.651 0.216 CA 8.627 10.442 7.387 0.660 1.590 85.748 1.021 178.437 1.375 H 0.493 10.511 0.323 26.126 0.140 3.142 0.041 57.800 0.003 I 20.147 4.347 18.995 0.381 7.514 27.766 2.273 66.878 4.071 N 12.222 0.006 3.135 9.893 2.014 28.997 1.167 0.583 -11.538 O 3.049 13.277 2.287 5.701 1.546 0.324 0.867 32.909 0.251 S 6.905 1.468 5.203 22.215 1.438 0.254 1.586 56.172 0.867 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 1 ALA ALA C . n A 1 2 ALA 2 2 2 ALA ALA C . n A 1 3 GLN 3 3 3 GLN GLN C . n A 1 4 THR 4 4 4 THR THR C . n A 1 5 ASN 5 5 5 ASN ASN C . n A 1 6 ALA 6 6 6 ALA ALA C . n A 1 7 PRO 7 7 7 PRO PRO C . n A 1 8 TRP 8 8 8 TRP TRP C . n A 1 9 GLY 9 9 9 GLY GLY C . n A 1 10 LEU 10 10 10 LEU LEU C . n A 1 11 ALA 11 11 11 ALA ALA C . n A 1 12 ARG 12 12 12 ARG ARG C . n A 1 13 ILE 13 13 13 ILE ILE C . n A 1 14 SER 14 14 14 SER SER C . n A 1 15 SER 15 15 15 SER SER C . n A 1 16 THR 16 16 16 THR THR C . n A 1 17 SER 17 17 17 SER SER C . n A 1 18 PRO 18 18 18 PRO PRO C . n A 1 19 GLY 19 19 19 GLY GLY C . n A 1 20 THR 20 20 20 THR THR C . n A 1 21 SER 21 21 21 SER SER C . n A 1 22 THR 22 22 22 THR THR C . n A 1 23 TYR 23 23 23 TYR TYR C . n A 1 24 TYR 24 24 24 TYR TYR C . n A 1 25 TYR 25 25 25 TYR TYR C . n A 1 26 ASP 26 26 26 ASP ASP C . n A 1 27 GLU 27 27 27 GLU GLU C . n A 1 28 SER 28 28 28 SER SER C . n A 1 29 ALA 29 29 29 ALA ALA C . n A 1 30 GLY 30 30 30 GLY GLY C . n A 1 31 GLN 31 31 31 GLN GLN C . n A 1 32 GLY 32 32 32 GLY GLY C . n A 1 33 SER 33 33 33 SER SER C . n A 1 34 CYS 34 34 34 CYS CYS C . n A 1 35 VAL 35 35 35 VAL VAL C . n A 1 36 TYR 36 36 36 TYR TYR C . n A 1 37 VAL 37 37 37 VAL VAL C . n A 1 38 ILE 38 38 38 ILE ILE C . n A 1 39 ASP 39 39 39 ASP ASP C . n A 1 40 THR 40 40 40 THR THR C . n A 1 41 GLY 41 41 41 GLY GLY C . n A 1 42 ILE 42 42 42 ILE ILE C . n A 1 43 GLU 43 43 43 GLU GLU C . n A 1 44 ALA 44 44 44 ALA ALA C . n A 1 45 SER 45 45 45 SER SER C . n A 1 46 HIS 46 46 46 HIS HIS C . n A 1 47 PRO 47 47 47 PRO PRO C . n A 1 48 GLU 48 48 48 GLU GLU C . n A 1 49 PHE 49 49 49 PHE PHE C . n A 1 50 GLU 50 50 50 GLU GLU C . n A 1 51 GLY 51 51 51 GLY GLY C . n A 1 52 ARG 52 52 52 ARG ARG C . n A 1 53 ALA 53 53 53 ALA ALA C . n A 1 54 GLN 54 54 54 GLN GLN C . n A 1 55 MET 55 55 55 MET MET C . n A 1 56 VAL 56 56 56 VAL VAL C . n A 1 57 LYS 57 57 57 LYS LYS C . n A 1 58 THR 58 58 58 THR THR C . n A 1 59 TYR 59 59 59 TYR TYR C . n A 1 60 TYR 60 60 60 TYR TYR C . n A 1 61 TYR 61 61 61 TYR TYR C . n A 1 62 SER 62 62 62 SER SER C . n A 1 63 SER 63 63 63 SER SER C . n A 1 64 ARG 64 64 64 ARG ARG C . n A 1 65 ASP 65 65 65 ASP ASP C . n A 1 66 GLY 66 66 66 GLY GLY C . n A 1 67 ASN 67 67 67 ASN ASN C . n A 1 68 GLY 68 68 68 GLY GLY C . n A 1 69 HIS 69 69 69 HIS HIS C . n A 1 70 GLY 70 70 70 GLY GLY C . n A 1 71 THR 71 71 71 THR THR C . n A 1 72 HIS 72 72 72 HIS HIS C . n A 1 73 CYS 73 73 73 CYS CYS C . n A 1 74 ALA 74 74 74 ALA ALA C . n A 1 75 GLY 75 75 75 GLY GLY C . n A 1 76 THR 76 76 76 THR THR C . n A 1 77 VAL 77 77 77 VAL VAL C . n A 1 78 GLY 78 78 78 GLY GLY C . n A 1 79 SER 79 79 79 SER SER C . n A 1 80 ARG 80 80 80 ARG ARG C . n A 1 81 THR 81 81 81 THR THR C . n A 1 82 TYR 82 82 82 TYR TYR C . n A 1 83 GLY 83 83 83 GLY GLY C . n A 1 84 VAL 84 84 84 VAL VAL C . n A 1 85 ALA 85 85 85 ALA ALA C . n A 1 86 LYS 86 86 86 LYS LYS C . n A 1 87 LYS 87 87 87 LYS LYS C . n A 1 88 THR 88 88 88 THR THR C . n A 1 89 GLN 89 89 89 GLN GLN C . n A 1 90 LEU 90 90 90 LEU LEU C . n A 1 91 PHE 91 91 91 PHE PHE C . n A 1 92 GLY 92 92 92 GLY GLY C . n A 1 93 VAL 93 93 93 VAL VAL C . n A 1 94 LYS 94 94 94 LYS LYS C . n A 1 95 VAL 95 95 95 VAL VAL C . n A 1 96 LEU 96 96 96 LEU LEU C . n A 1 97 ASP 97 97 97 ASP ASP C . n A 1 98 ASP 98 98 98 ASP ASP C . n A 1 99 ASN 99 99 99 ASN ASN C . n A 1 100 GLY 100 100 100 GLY GLY C . n A 1 101 SER 101 101 101 SER SER C . n A 1 102 GLY 102 102 102 GLY GLY C . n A 1 103 GLN 103 103 103 GLN GLN C . n A 1 104 TYR 104 104 104 TYR TYR C . n A 1 105 SER 105 105 105 SER SER C . n A 1 106 THR 106 106 106 THR THR C . n A 1 107 ILE 107 107 107 ILE ILE C . n A 1 108 ILE 108 108 108 ILE ILE C . n A 1 109 ALA 109 109 109 ALA ALA C . n A 1 110 GLY 110 110 110 GLY GLY C . n A 1 111 MET 111 111 111 MET MET C . n A 1 112 ASP 112 112 112 ASP ASP C . n A 1 113 PHE 113 113 113 PHE PHE C . n A 1 114 VAL 114 114 114 VAL VAL C . n A 1 115 ALA 115 115 115 ALA ALA C . n A 1 116 SER 116 116 116 SER SER C . n A 1 117 ASP 117 117 117 ASP ASP C . n A 1 118 LYS 118 118 118 LYS LYS C . n A 1 119 ASN 119 119 119 ASN ASN C . n A 1 120 ASN 120 120 120 ASN ASN C . n A 1 121 ARG 121 121 121 ARG ARG C . n A 1 122 ASN 122 122 122 ASN ASN C . n A 1 123 CYS 123 123 123 CYS CYS C . n A 1 124 PRO 124 124 124 PRO PRO C . n A 1 125 LYS 125 125 125 LYS LYS C . n A 1 126 GLY 126 126 126 GLY GLY C . n A 1 127 VAL 127 127 127 VAL VAL C . n A 1 128 VAL 128 128 128 VAL VAL C . n A 1 129 ALA 129 129 129 ALA ALA C . n A 1 130 SER 130 130 130 SER SER C . n A 1 131 LEU 131 131 131 LEU LEU C . n A 1 132 SER 132 132 132 SER SER C . n A 1 133 LEU 133 133 133 LEU LEU C . n A 1 134 GLY 134 134 134 GLY GLY C . n A 1 135 GLY 135 135 135 GLY GLY C . n A 1 136 GLY 136 136 136 GLY GLY C . n A 1 137 TYR 137 137 137 TYR TYR C . n A 1 138 SER 138 138 138 SER SER C . n A 1 139 SER 139 139 139 SER SER C . n A 1 140 SER 140 140 140 SER SER C . n A 1 141 VAL 141 141 141 VAL VAL C . n A 1 142 ASN 142 142 142 ASN ASN C . n A 1 143 SER 143 143 143 SER SER C . n A 1 144 ALA 144 144 144 ALA ALA C . n A 1 145 ALA 145 145 145 ALA ALA C . n A 1 146 ALA 146 146 146 ALA ALA C . n A 1 147 ARG 147 147 147 ARG ARG C . n A 1 148 LEU 148 148 148 LEU LEU C . n A 1 149 GLN 149 149 149 GLN GLN C . n A 1 150 SER 150 150 150 SER SER C . n A 1 151 SER 151 151 151 SER SER C . n A 1 152 GLY 152 152 152 GLY GLY C . n A 1 153 VAL 153 153 153 VAL VAL C . n A 1 154 MET 154 154 154 MET MET C . n A 1 155 VAL 155 155 155 VAL VAL C . n A 1 156 ALA 156 156 156 ALA ALA C . n A 1 157 VAL 157 157 157 VAL VAL C . n A 1 158 ALA 158 158 158 ALA ALA C . n A 1 159 ALA 159 159 159 ALA ALA C . n A 1 160 GLY 160 160 160 GLY GLY C . n A 1 161 ASN 161 161 161 ASN ASN C . n A 1 162 ASN 162 162 162 ASN ASN C . n A 1 163 ASN 163 163 163 ASN ASN C . n A 1 164 ALA 164 164 164 ALA ALA C . n A 1 165 ASP 165 165 165 ASP ASP C . n A 1 166 ALA 166 166 166 ALA ALA C . n A 1 167 ARG 167 167 167 ARG ARG C . n A 1 168 ASN 168 168 168 ASN ASN C . n A 1 169 TYR 169 169 169 TYR TYR C . n A 1 170 SER 170 170 170 SER SER C . n A 1 171 PRO 171 171 171 PRO PRO C . n A 1 172 ALA 172 172 172 ALA ALA C . n A 1 173 SER 173 173 173 SER SER C . n A 1 174 GLU 174 174 174 GLU GLU C . n A 1 175 PRO 175 175 175 PRO PRO C . n A 1 176 SER 176 176 176 SER SER C . n A 1 177 VAL 177 177 177 VAL VAL C . n A 1 178 CYS 178 178 178 CYS CYS C . n A 1 179 THR 179 179 179 THR THR C . n A 1 180 VAL 180 180 180 VAL VAL C . n A 1 181 GLY 181 181 181 GLY GLY C . n A 1 182 ALA 182 182 182 ALA ALA C . n A 1 183 SER 183 183 183 SER SER C . n A 1 184 ASP 184 184 184 ASP ASP C . n A 1 185 ARG 185 185 185 ARG ARG C . n A 1 186 TYR 186 186 186 TYR TYR C . n A 1 187 ASP 187 187 187 ASP ASP C . n A 1 188 ARG 188 188 188 ARG ARG C . n A 1 189 ARG 189 189 189 ARG ARG C . n A 1 190 SER 190 190 190 SER SER C . n A 1 191 SER 191 191 191 SER SER C . n A 1 192 PHE 192 192 192 PHE PHE C . n A 1 193 SER 193 193 193 SER SER C . n A 1 194 ASN 194 194 194 ASN ASN C . n A 1 195 TYR 195 195 195 TYR TYR C . n A 1 196 GLY 196 196 196 GLY GLY C . n A 1 197 SER 197 197 197 SER SER C . n A 1 198 VAL 198 198 198 VAL VAL C . n A 1 199 LEU 199 199 199 LEU LEU C . n A 1 200 ASP 200 200 200 ASP ASP C . n A 1 201 ILE 201 201 201 ILE ILE C . n A 1 202 PHE 202 202 202 PHE PHE C . n A 1 203 GLY 203 203 203 GLY GLY C . n A 1 204 PRO 204 204 204 PRO PRO C . n A 1 205 GLY 205 205 205 GLY GLY C . n A 1 206 THR 206 206 206 THR THR C . n A 1 207 SER 207 207 207 SER SER C . n A 1 208 ILE 208 208 208 ILE ILE C . n A 1 209 LEU 209 209 209 LEU LEU C . n A 1 210 SER 210 210 210 SER SER C . n A 1 211 THR 211 211 211 THR THR C . n A 1 212 TRP 212 212 212 TRP TRP C . n A 1 213 ILE 213 213 213 ILE ILE C . n A 1 214 GLY 214 214 214 GLY GLY C . n A 1 215 GLY 215 215 215 GLY GLY C . n A 1 216 SER 216 216 216 SER SER C . n A 1 217 THR 217 217 217 THR THR C . n A 1 218 ARG 218 218 218 ARG ARG C . n A 1 219 SER 219 219 219 SER SER C . n A 1 220 ILE 220 220 220 ILE ILE C . n A 1 221 SER 221 221 221 SER SER C . n A 1 222 GLY 222 222 222 GLY GLY C . n A 1 223 THR 223 223 223 THR THR C . n A 1 224 SER 224 224 224 SER SER C . n A 1 225 MET 225 225 225 MET MET C . n A 1 226 ALA 226 226 226 ALA ALA C . n A 1 227 THR 227 227 227 THR THR C . n A 1 228 PRO 228 228 228 PRO PRO C . n A 1 229 HIS 229 229 229 HIS HIS C . n A 1 230 VAL 230 230 230 VAL VAL C . n A 1 231 ALA 231 231 231 ALA ALA C . n A 1 232 GLY 232 232 232 GLY GLY C . n A 1 233 LEU 233 233 233 LEU LEU C . n A 1 234 ALA 234 234 234 ALA ALA C . n A 1 235 ALA 235 235 235 ALA ALA C . n A 1 236 TYR 236 236 236 TYR TYR C . n A 1 237 LEU 237 237 237 LEU LEU C . n A 1 238 MET 238 238 238 MET MET C . n A 1 239 THR 239 239 239 THR THR C . n A 1 240 LEU 240 240 240 LEU LEU C . n A 1 241 GLY 241 241 241 GLY GLY C . n A 1 242 LYS 242 242 242 LYS LYS C . n A 1 243 THR 243 243 243 THR THR C . n A 1 244 THR 244 244 244 THR THR C . n A 1 245 ALA 245 245 245 ALA ALA C . n A 1 246 ALA 246 246 246 ALA ALA C . n A 1 247 SER 247 247 247 SER SER C . n A 1 248 ALA 248 248 248 ALA ALA C . n A 1 249 CYS 249 249 249 CYS CYS C . n A 1 250 ARG 250 250 250 ARG ARG C . n A 1 251 TYR 251 251 251 TYR TYR C . n A 1 252 ILE 252 252 252 ILE ILE C . n A 1 253 ALA 253 253 253 ALA ALA C . n A 1 254 ASP 254 254 254 ASP ASP C . n A 1 255 THR 255 255 255 THR THR C . n A 1 256 ALA 256 256 256 ALA ALA C . n A 1 257 ASN 257 257 257 ASN ASN C . n A 1 258 LYS 258 258 258 LYS LYS C . n A 1 259 GLY 259 259 259 GLY GLY C . n A 1 260 ASP 260 260 260 ASP ASP C . n A 1 261 LEU 261 261 261 LEU LEU C . n A 1 262 SER 262 262 262 SER SER C . n A 1 263 ASN 263 263 263 ASN ASN C . n A 1 264 ILE 264 264 264 ILE ILE C . n A 1 265 PRO 265 265 265 PRO PRO C . n A 1 266 PHE 266 266 266 PHE PHE C . n A 1 267 GLY 267 267 267 GLY GLY C . n A 1 268 THR 268 268 268 THR THR C . n A 1 269 VAL 269 269 269 VAL VAL C . n A 1 270 ASN 270 270 270 ASN ASN C . n A 1 271 LEU 271 271 271 LEU LEU C . n A 1 272 LEU 272 272 272 LEU LEU C . n A 1 273 ALA 273 273 273 ALA ALA C . n A 1 274 TYR 274 274 274 TYR TYR C . n A 1 275 ASN 275 275 275 ASN ASN C . n A 1 276 ASN 276 276 276 ASN ASN C . n A 1 277 TYR 277 277 277 TYR TYR C . n A 1 278 GLN 278 278 278 GLN GLN C . n A 1 279 ALA 279 279 279 ALA ALA C . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email tgonen@ucla.edu _pdbx_contact_author.name_first Tamir _pdbx_contact_author.name_last Gonen _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-9254-4069 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 I3C 1 301 301 I3C I3C C . C 2 I3C 1 302 302 I3C I3C C . D 3 CA 1 303 2 CA CA C . E 3 CA 1 304 4 CA CA C . F 3 CA 1 305 5 CA CA C . G 3 CA 1 306 8 CA CA C . H 3 CA 1 307 9 CA CA C . I 4 HOH 1 401 159 HOH HOH C . I 4 HOH 2 402 151 HOH HOH C . I 4 HOH 3 403 231 HOH HOH C . I 4 HOH 4 404 267 HOH HOH C . I 4 HOH 5 405 271 HOH HOH C . I 4 HOH 6 406 188 HOH HOH C . I 4 HOH 7 407 47 HOH HOH C . I 4 HOH 8 408 18 HOH HOH C . I 4 HOH 9 409 272 HOH HOH C . I 4 HOH 10 410 269 HOH HOH C . I 4 HOH 11 411 90 HOH HOH C . I 4 HOH 12 412 102 HOH HOH C . I 4 HOH 13 413 266 HOH HOH C . I 4 HOH 14 414 149 HOH HOH C . I 4 HOH 15 415 220 HOH HOH C . I 4 HOH 16 416 225 HOH HOH C . I 4 HOH 17 417 156 HOH HOH C . I 4 HOH 18 418 262 HOH HOH C . I 4 HOH 19 419 253 HOH HOH C . I 4 HOH 20 420 135 HOH HOH C . I 4 HOH 21 421 255 HOH HOH C . I 4 HOH 22 422 30 HOH HOH C . I 4 HOH 23 423 107 HOH HOH C . I 4 HOH 24 424 256 HOH HOH C . I 4 HOH 25 425 168 HOH HOH C . I 4 HOH 26 426 208 HOH HOH C . I 4 HOH 27 427 76 HOH HOH C . I 4 HOH 28 428 78 HOH HOH C . I 4 HOH 29 429 42 HOH HOH C . I 4 HOH 30 430 260 HOH HOH C . I 4 HOH 31 431 268 HOH HOH C . I 4 HOH 32 432 257 HOH HOH C . I 4 HOH 33 433 89 HOH HOH C . I 4 HOH 34 434 258 HOH HOH C . I 4 HOH 35 435 270 HOH HOH C . I 4 HOH 36 436 125 HOH HOH C . I 4 HOH 37 437 152 HOH HOH C . I 4 HOH 38 438 24 HOH HOH C . I 4 HOH 39 439 62 HOH HOH C . I 4 HOH 40 440 37 HOH HOH C . I 4 HOH 41 441 67 HOH HOH C . I 4 HOH 42 442 85 HOH HOH C . I 4 HOH 43 443 254 HOH HOH C . I 4 HOH 44 444 245 HOH HOH C . I 4 HOH 45 445 7 HOH HOH C . I 4 HOH 46 446 261 HOH HOH C . I 4 HOH 47 447 157 HOH HOH C . I 4 HOH 48 448 36 HOH HOH C . I 4 HOH 49 449 160 HOH HOH C . I 4 HOH 50 450 79 HOH HOH C . I 4 HOH 51 451 40 HOH HOH C . I 4 HOH 52 452 5 HOH HOH C . I 4 HOH 53 453 83 HOH HOH C . I 4 HOH 54 454 33 HOH HOH C . I 4 HOH 55 455 175 HOH HOH C . I 4 HOH 56 456 10 HOH HOH C . I 4 HOH 57 457 221 HOH HOH C . I 4 HOH 58 458 34 HOH HOH C . I 4 HOH 59 459 75 HOH HOH C . I 4 HOH 60 460 186 HOH HOH C . I 4 HOH 61 461 199 HOH HOH C . I 4 HOH 62 462 82 HOH HOH C . I 4 HOH 63 463 264 HOH HOH C . I 4 HOH 64 464 133 HOH HOH C . I 4 HOH 65 465 265 HOH HOH C . I 4 HOH 66 466 13 HOH HOH C . I 4 HOH 67 467 226 HOH HOH C . I 4 HOH 68 468 93 HOH HOH C . I 4 HOH 69 469 48 HOH HOH C . I 4 HOH 70 470 184 HOH HOH C . I 4 HOH 71 471 28 HOH HOH C . I 4 HOH 72 472 15 HOH HOH C . I 4 HOH 73 473 132 HOH HOH C . I 4 HOH 74 474 87 HOH HOH C . I 4 HOH 75 475 69 HOH HOH C . I 4 HOH 76 476 251 HOH HOH C . I 4 HOH 77 477 55 HOH HOH C . I 4 HOH 78 478 45 HOH HOH C . I 4 HOH 79 479 31 HOH HOH C . I 4 HOH 80 480 8 HOH HOH C . I 4 HOH 81 481 222 HOH HOH C . I 4 HOH 82 482 21 HOH HOH C . I 4 HOH 83 483 263 HOH HOH C . I 4 HOH 84 484 115 HOH HOH C . I 4 HOH 85 485 19 HOH HOH C . I 4 HOH 86 486 61 HOH HOH C . I 4 HOH 87 487 109 HOH HOH C . I 4 HOH 88 488 58 HOH HOH C . I 4 HOH 89 489 16 HOH HOH C . I 4 HOH 90 490 74 HOH HOH C . I 4 HOH 91 491 63 HOH HOH C . I 4 HOH 92 492 17 HOH HOH C . I 4 HOH 93 493 9 HOH HOH C . I 4 HOH 94 494 97 HOH HOH C . I 4 HOH 95 495 95 HOH HOH C . I 4 HOH 96 496 6 HOH HOH C . I 4 HOH 97 497 211 HOH HOH C . I 4 HOH 98 498 44 HOH HOH C . I 4 HOH 99 499 202 HOH HOH C . I 4 HOH 100 500 118 HOH HOH C . I 4 HOH 101 501 4 HOH HOH C . I 4 HOH 102 502 182 HOH HOH C . I 4 HOH 103 503 81 HOH HOH C . I 4 HOH 104 504 194 HOH HOH C . I 4 HOH 105 505 29 HOH HOH C . I 4 HOH 106 506 68 HOH HOH C . I 4 HOH 107 507 2 HOH HOH C . I 4 HOH 108 508 209 HOH HOH C . I 4 HOH 109 509 103 HOH HOH C . I 4 HOH 110 510 41 HOH HOH C . I 4 HOH 111 511 35 HOH HOH C . I 4 HOH 112 512 27 HOH HOH C . I 4 HOH 113 513 53 HOH HOH C . I 4 HOH 114 514 117 HOH HOH C . I 4 HOH 115 515 20 HOH HOH C . I 4 HOH 116 516 84 HOH HOH C . I 4 HOH 117 517 49 HOH HOH C . I 4 HOH 118 518 171 HOH HOH C . I 4 HOH 119 519 3 HOH HOH C . I 4 HOH 120 520 173 HOH HOH C . I 4 HOH 121 521 50 HOH HOH C . I 4 HOH 122 522 101 HOH HOH C . I 4 HOH 123 523 112 HOH HOH C . I 4 HOH 124 524 73 HOH HOH C . I 4 HOH 125 525 12 HOH HOH C . I 4 HOH 126 526 64 HOH HOH C . I 4 HOH 127 527 114 HOH HOH C . I 4 HOH 128 528 52 HOH HOH C . I 4 HOH 129 529 162 HOH HOH C . I 4 HOH 130 530 204 HOH HOH C . I 4 HOH 131 531 32 HOH HOH C . I 4 HOH 132 532 259 HOH HOH C . I 4 HOH 133 533 11 HOH HOH C . I 4 HOH 134 534 98 HOH HOH C . I 4 HOH 135 535 164 HOH HOH C . I 4 HOH 136 536 39 HOH HOH C . I 4 HOH 137 537 88 HOH HOH C . I 4 HOH 138 538 1 HOH HOH C . I 4 HOH 139 539 43 HOH HOH C . I 4 HOH 140 540 242 HOH HOH C . I 4 HOH 141 541 23 HOH HOH C . I 4 HOH 142 542 106 HOH HOH C . I 4 HOH 143 543 25 HOH HOH C . I 4 HOH 144 544 56 HOH HOH C . I 4 HOH 145 545 46 HOH HOH C . I 4 HOH 146 546 187 HOH HOH C . I 4 HOH 147 547 14 HOH HOH C . I 4 HOH 148 548 129 HOH HOH C . I 4 HOH 149 549 212 HOH HOH C . I 4 HOH 150 550 126 HOH HOH C . I 4 HOH 151 551 119 HOH HOH C . I 4 HOH 152 552 94 HOH HOH C . I 4 HOH 153 553 71 HOH HOH C . I 4 HOH 154 554 176 HOH HOH C . I 4 HOH 155 555 169 HOH HOH C . I 4 HOH 156 556 183 HOH HOH C . I 4 HOH 157 557 124 HOH HOH C . I 4 HOH 158 558 22 HOH HOH C . I 4 HOH 159 559 51 HOH HOH C . I 4 HOH 160 560 72 HOH HOH C . I 4 HOH 161 561 111 HOH HOH C . I 4 HOH 162 562 190 HOH HOH C . I 4 HOH 163 563 237 HOH HOH C . I 4 HOH 164 564 195 HOH HOH C . I 4 HOH 165 565 70 HOH HOH C . I 4 HOH 166 566 92 HOH HOH C . I 4 HOH 167 567 172 HOH HOH C . I 4 HOH 168 568 60 HOH HOH C . I 4 HOH 169 569 189 HOH HOH C . I 4 HOH 170 570 99 HOH HOH C . I 4 HOH 171 571 196 HOH HOH C . I 4 HOH 172 572 229 HOH HOH C . I 4 HOH 173 573 57 HOH HOH C . I 4 HOH 174 574 203 HOH HOH C . I 4 HOH 175 575 206 HOH HOH C . I 4 HOH 176 576 248 HOH HOH C . I 4 HOH 177 577 123 HOH HOH C . I 4 HOH 178 578 233 HOH HOH C . I 4 HOH 179 579 127 HOH HOH C . I 4 HOH 180 580 122 HOH HOH C . I 4 HOH 181 581 205 HOH HOH C . I 4 HOH 182 582 239 HOH HOH C . I 4 HOH 183 583 105 HOH HOH C . I 4 HOH 184 584 217 HOH HOH C . I 4 HOH 185 585 232 HOH HOH C . I 4 HOH 186 586 197 HOH HOH C . I 4 HOH 187 587 235 HOH HOH C . I 4 HOH 188 588 116 HOH HOH C . I 4 HOH 189 589 104 HOH HOH C . I 4 HOH 190 590 174 HOH HOH C . I 4 HOH 191 591 66 HOH HOH C . I 4 HOH 192 592 38 HOH HOH C . I 4 HOH 193 593 96 HOH HOH C . I 4 HOH 194 594 113 HOH HOH C . I 4 HOH 195 595 244 HOH HOH C . I 4 HOH 196 596 213 HOH HOH C . I 4 HOH 197 597 26 HOH HOH C . I 4 HOH 198 598 243 HOH HOH C . I 4 HOH 199 599 207 HOH HOH C . I 4 HOH 200 600 193 HOH HOH C . I 4 HOH 201 601 228 HOH HOH C . I 4 HOH 202 602 177 HOH HOH C . I 4 HOH 203 603 130 HOH HOH C . I 4 HOH 204 604 128 HOH HOH C . I 4 HOH 205 605 180 HOH HOH C . I 4 HOH 206 606 65 HOH HOH C . I 4 HOH 207 607 77 HOH HOH C . I 4 HOH 208 608 252 HOH HOH C . I 4 HOH 209 609 227 HOH HOH C . I 4 HOH 210 610 192 HOH HOH C . I 4 HOH 211 611 201 HOH HOH C . I 4 HOH 212 612 86 HOH HOH C . I 4 HOH 213 613 153 HOH HOH C . I 4 HOH 214 614 210 HOH HOH C . I 4 HOH 215 615 230 HOH HOH C . I 4 HOH 216 616 200 HOH HOH C . I 4 HOH 217 617 216 HOH HOH C . I 4 HOH 218 618 247 HOH HOH C . I 4 HOH 219 619 54 HOH HOH C . I 4 HOH 220 620 223 HOH HOH C . I 4 HOH 221 621 108 HOH HOH C . I 4 HOH 222 622 165 HOH HOH C . I 4 HOH 223 623 59 HOH HOH C . I 4 HOH 224 624 219 HOH HOH C . I 4 HOH 225 625 120 HOH HOH C . I 4 HOH 226 626 185 HOH HOH C . I 4 HOH 227 627 234 HOH HOH C . I 4 HOH 228 628 250 HOH HOH C . I 4 HOH 229 629 170 HOH HOH C . I 4 HOH 230 630 110 HOH HOH C . I 4 HOH 231 631 238 HOH HOH C . I 4 HOH 232 632 240 HOH HOH C . I 4 HOH 233 633 178 HOH HOH C . I 4 HOH 234 634 198 HOH HOH C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id C _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 460 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id I _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A THR 16 ? C THR 16 ? 1_555 CA ? E CA . ? C CA 304 ? 1_555 OD1 ? A ASP 260 ? C ASP 260 ? 1_555 128.2 ? 2 O ? A THR 16 ? C THR 16 ? 1_555 CA ? E CA . ? C CA 304 ? 1_555 OD2 ? A ASP 260 ? C ASP 260 ? 1_555 75.1 ? 3 OD1 ? A ASP 260 ? C ASP 260 ? 1_555 CA ? E CA . ? C CA 304 ? 1_555 OD2 ? A ASP 260 ? C ASP 260 ? 1_555 54.1 ? 4 O ? A THR 16 ? C THR 16 ? 1_555 CA ? E CA . ? C CA 304 ? 1_555 O ? I HOH . ? C HOH 506 ? 1_555 87.6 ? 5 OD1 ? A ASP 260 ? C ASP 260 ? 1_555 CA ? E CA . ? C CA 304 ? 1_555 O ? I HOH . ? C HOH 506 ? 1_555 94.6 ? 6 OD2 ? A ASP 260 ? C ASP 260 ? 1_555 CA ? E CA . ? C CA 304 ? 1_555 O ? I HOH . ? C HOH 506 ? 1_555 82.9 ? 7 O ? A THR 16 ? C THR 16 ? 1_555 CA ? E CA . ? C CA 304 ? 1_555 O ? I HOH . ? C HOH 559 ? 1_555 87.9 ? 8 OD1 ? A ASP 260 ? C ASP 260 ? 1_555 CA ? E CA . ? C CA 304 ? 1_555 O ? I HOH . ? C HOH 559 ? 1_555 79.5 ? 9 OD2 ? A ASP 260 ? C ASP 260 ? 1_555 CA ? E CA . ? C CA 304 ? 1_555 O ? I HOH . ? C HOH 559 ? 1_555 85.0 ? 10 O ? I HOH . ? C HOH 506 ? 1_555 CA ? E CA . ? C CA 304 ? 1_555 O ? I HOH . ? C HOH 559 ? 1_555 167.9 ? 11 O ? A THR 16 ? C THR 16 ? 1_555 CA ? E CA . ? C CA 304 ? 1_555 O ? I HOH . ? C HOH 561 ? 1_555 74.2 ? 12 OD1 ? A ASP 260 ? C ASP 260 ? 1_555 CA ? E CA . ? C CA 304 ? 1_555 O ? I HOH . ? C HOH 561 ? 1_555 151.5 ? 13 OD2 ? A ASP 260 ? C ASP 260 ? 1_555 CA ? E CA . ? C CA 304 ? 1_555 O ? I HOH . ? C HOH 561 ? 1_555 147.9 ? 14 O ? I HOH . ? C HOH 506 ? 1_555 CA ? E CA . ? C CA 304 ? 1_555 O ? I HOH . ? C HOH 561 ? 1_555 104.7 ? 15 O ? I HOH . ? C HOH 559 ? 1_555 CA ? E CA . ? C CA 304 ? 1_555 O ? I HOH . ? C HOH 561 ? 1_555 84.8 ? 16 O ? A PRO 175 ? C PRO 175 ? 1_555 CA ? D CA . ? C CA 303 ? 1_555 O ? A VAL 177 ? C VAL 177 ? 1_555 87.1 ? 17 O ? A PRO 175 ? C PRO 175 ? 1_555 CA ? D CA . ? C CA 303 ? 1_555 OD1 ? A ASP 200 ? C ASP 200 ? 1_555 152.0 ? 18 O ? A VAL 177 ? C VAL 177 ? 1_555 CA ? D CA . ? C CA 303 ? 1_555 OD1 ? A ASP 200 ? C ASP 200 ? 1_555 113.6 ? 19 O ? A PRO 175 ? C PRO 175 ? 1_555 CA ? D CA . ? C CA 303 ? 1_555 OD2 ? A ASP 200 ? C ASP 200 ? 1_555 155.5 ? 20 O ? A VAL 177 ? C VAL 177 ? 1_555 CA ? D CA . ? C CA 303 ? 1_555 OD2 ? A ASP 200 ? C ASP 200 ? 1_555 78.2 ? 21 OD1 ? A ASP 200 ? C ASP 200 ? 1_555 CA ? D CA . ? C CA 303 ? 1_555 OD2 ? A ASP 200 ? C ASP 200 ? 1_555 52.2 ? 22 O ? A PRO 175 ? C PRO 175 ? 1_555 CA ? D CA . ? C CA 303 ? 1_555 O ? I HOH . ? C HOH 419 ? 1_555 97.4 ? 23 O ? A VAL 177 ? C VAL 177 ? 1_555 CA ? D CA . ? C CA 303 ? 1_555 O ? I HOH . ? C HOH 419 ? 1_555 145.4 ? 24 OD1 ? A ASP 200 ? C ASP 200 ? 1_555 CA ? D CA . ? C CA 303 ? 1_555 O ? I HOH . ? C HOH 419 ? 1_555 76.5 ? 25 OD2 ? A ASP 200 ? C ASP 200 ? 1_555 CA ? D CA . ? C CA 303 ? 1_555 O ? I HOH . ? C HOH 419 ? 1_555 84.4 ? 26 O ? A PRO 175 ? C PRO 175 ? 1_555 CA ? D CA . ? C CA 303 ? 1_555 O ? I HOH . ? C HOH 432 ? 1_555 80.5 ? 27 O ? A VAL 177 ? C VAL 177 ? 1_555 CA ? D CA . ? C CA 303 ? 1_555 O ? I HOH . ? C HOH 432 ? 1_555 72.0 ? 28 OD1 ? A ASP 200 ? C ASP 200 ? 1_555 CA ? D CA . ? C CA 303 ? 1_555 O ? I HOH . ? C HOH 432 ? 1_555 122.8 ? 29 OD2 ? A ASP 200 ? C ASP 200 ? 1_555 CA ? D CA . ? C CA 303 ? 1_555 O ? I HOH . ? C HOH 432 ? 1_555 76.5 ? 30 O ? I HOH . ? C HOH 419 ? 1_555 CA ? D CA . ? C CA 303 ? 1_555 O ? I HOH . ? C HOH 432 ? 1_555 75.0 ? 31 O ? A PRO 175 ? C PRO 175 ? 1_555 CA ? D CA . ? C CA 303 ? 1_555 O ? I HOH . ? C HOH 458 ? 1_555 88.8 ? 32 O ? A VAL 177 ? C VAL 177 ? 1_555 CA ? D CA . ? C CA 303 ? 1_555 O ? I HOH . ? C HOH 458 ? 1_555 66.4 ? 33 OD1 ? A ASP 200 ? C ASP 200 ? 1_555 CA ? D CA . ? C CA 303 ? 1_555 O ? I HOH . ? C HOH 458 ? 1_555 83.1 ? 34 OD2 ? A ASP 200 ? C ASP 200 ? 1_555 CA ? D CA . ? C CA 303 ? 1_555 O ? I HOH . ? C HOH 458 ? 1_555 102.8 ? 35 O ? I HOH . ? C HOH 419 ? 1_555 CA ? D CA . ? C CA 303 ? 1_555 O ? I HOH . ? C HOH 458 ? 1_555 147.5 ? 36 O ? I HOH . ? C HOH 432 ? 1_555 CA ? D CA . ? C CA 303 ? 1_555 O ? I HOH . ? C HOH 458 ? 1_555 137.5 ? 37 O ? A PRO 175 ? C PRO 175 ? 1_555 CA ? D CA . ? C CA 303 ? 1_555 O ? I HOH . ? C HOH 533 ? 1_555 74.5 ? 38 O ? A VAL 177 ? C VAL 177 ? 1_555 CA ? D CA . ? C CA 303 ? 1_555 O ? I HOH . ? C HOH 533 ? 1_555 136.0 ? 39 OD1 ? A ASP 200 ? C ASP 200 ? 1_555 CA ? D CA . ? C CA 303 ? 1_555 O ? I HOH . ? C HOH 533 ? 1_555 77.5 ? 40 OD2 ? A ASP 200 ? C ASP 200 ? 1_555 CA ? D CA . ? C CA 303 ? 1_555 O ? I HOH . ? C HOH 533 ? 1_555 129.3 ? 41 O ? I HOH . ? C HOH 419 ? 1_555 CA ? D CA . ? C CA 303 ? 1_555 O ? I HOH . ? C HOH 533 ? 1_555 77.6 ? 42 O ? I HOH . ? C HOH 432 ? 1_555 CA ? D CA . ? C CA 303 ? 1_555 O ? I HOH . ? C HOH 533 ? 1_555 139.7 ? 43 O ? I HOH . ? C HOH 458 ? 1_555 CA ? D CA . ? C CA 303 ? 1_555 O ? I HOH . ? C HOH 533 ? 1_555 73.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-06-08 2 'Structure model' 1 1 2022-06-15 3 'Structure model' 1 2 2022-06-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.pdbx_database_id_PubMed' 2 2 'Structure model' '_citation.title' 3 2 'Structure model' '_citation_author.identifier_ORCID' 4 3 'Structure model' '_citation.journal_volume' 5 3 'Structure model' '_citation.page_first' 6 3 'Structure model' '_citation.page_last' # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author 'Garib N. Murshudov' _software.contact_author_email garib@mrc-lmb.cam.ac.uk _software.date 2020-24-08 _software.description '(un)restrained refinement or idealisation of macromolecular structures' _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name REFMAC _software.os ? _software.os_version ? _software.type ? _software.version 5.8.0267 _software.pdbx_ordinal 1 # _pdbx_entry_details.entry_id 7SKX _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _em_3d_fitting.entry_id 7SKX _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value 14.137 _em_3d_fitting.ref_protocol 'AB INITIO MODEL' _em_3d_fitting.ref_space RECIPROCAL _em_3d_fitting.target_criteria 'Maximum likelihood' _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 7SKX _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles ? _em_3d_reconstruction.resolution ? _em_3d_reconstruction.resolution_method 'DIFFRACTION PATTERN/LAYERLINES' _em_3d_reconstruction.symmetry_type '3D CRYSTAL' _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7.5 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'Proteinase K' _em_entity_assembly.source NATURAL _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 7SKX _em_image_scans.id 1 _em_image_scans.dimension_height 2048 _em_image_scans.dimension_width 2048 _em_image_scans.frames_per_image ? _em_image_scans.image_recording_id 1 _em_image_scans.sampling_size 28 _em_image_scans.scanner_model ? _em_image_scans.used_frames_per_image ? _em_image_scans.citation_id ? _em_image_scans.number_digital_images ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.details ? # _em_imaging.id 1 _em_imaging.entry_id 7SKX _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure BASIC _em_imaging.c2_aperture_diameter 50 _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen NITROGEN _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode DIFFRACTION _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum 90 _em_imaging.recording_temperature_minimum 77 _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details NEGATIVE _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 200 _em_sample_support.grid_type 'Quantifoil R2/2' _em_sample_support.method ? _em_sample_support.film_material ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 277 _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity 95 _em_vitrification.instrument 'LEICA PLUNGER' _em_vitrification.entry_id 7SKX _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7SKX _em_experiment.id 1 _em_experiment.aggregation_state '3D ARRAY' _em_experiment.reconstruction_method CRYSTALLOGRAPHY _em_experiment.entity_assembly_id 1 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 H C ASP 26 ? ? HH C TYR 236 ? ? 1.04 2 1 HG C SER 14 ? ? H C TYR 24 ? ? 1.18 3 1 H C SER 138 ? ? HG C SER 170 ? ? 1.30 4 1 HH11 C ARG 167 ? ? O C HOH 402 ? ? 1.52 5 1 O C HOH 548 ? ? O C HOH 604 ? ? 2.06 6 1 O C HOH 508 ? ? O C HOH 571 ? ? 2.14 7 1 O C HOH 520 ? ? O C HOH 601 ? ? 2.14 8 1 O C HOH 534 ? ? O C HOH 568 ? ? 2.16 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O C SER 191 ? ? 1_555 HH21 C ARG 250 ? ? 4_555 1.49 2 1 HH12 C ARG 250 ? ? 1_555 O C HOH 621 ? ? 3_544 1.50 3 1 O C SER 191 ? ? 1_555 NH2 C ARG 250 ? ? 4_555 1.71 4 1 NH1 C ARG 250 ? ? 1_555 O C HOH 621 ? ? 3_544 1.78 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CG _pdbx_validate_rmsd_bond.auth_asym_id_1 C _pdbx_validate_rmsd_bond.auth_comp_id_1 MET _pdbx_validate_rmsd_bond.auth_seq_id_1 154 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 SD _pdbx_validate_rmsd_bond.auth_asym_id_2 C _pdbx_validate_rmsd_bond.auth_comp_id_2 MET _pdbx_validate_rmsd_bond.auth_seq_id_2 154 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.608 _pdbx_validate_rmsd_bond.bond_target_value 1.807 _pdbx_validate_rmsd_bond.bond_deviation -0.199 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.026 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA C MET 154 ? ? CB C MET 154 ? ? CG C MET 154 ? ? 124.50 113.30 11.20 1.70 N 2 1 CG C MET 154 ? ? SD C MET 154 ? ? CE C MET 154 ? ? 110.83 100.20 10.63 1.60 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP C 39 ? ? -166.89 -144.28 2 1 ASN C 270 ? ? -106.31 77.10 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id C _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 634 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 5.83 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # _em_3d_crystal_entity.id 1 _em_3d_crystal_entity.image_processing_id 1 _em_3d_crystal_entity.angle_alpha 90 _em_3d_crystal_entity.angle_beta 90 _em_3d_crystal_entity.angle_gamma 90 _em_3d_crystal_entity.length_a 67.08 _em_3d_crystal_entity.length_b 67.08 _em_3d_crystal_entity.length_c 106.78 _em_3d_crystal_entity.space_group_name 'P 43 21 2' _em_3d_crystal_entity.space_group_num 96 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type NONE _em_ctf_correction.details ? # _em_diffraction.id 1 _em_diffraction.camera_length 1738 _em_diffraction.imaging_id 1 _em_diffraction.tilt_angle_list -30,30 # _em_diffraction_shell.id 1 _em_diffraction_shell.em_diffraction_stats_id 1 _em_diffraction_shell.fourier_space_coverage 89.3 _em_diffraction_shell.high_resolution 1.53 _em_diffraction_shell.low_resolution 1.50 _em_diffraction_shell.multiplicity 8.9 _em_diffraction_shell.num_structure_factors 1758 _em_diffraction_shell.phase_residual 30 # _em_diffraction_stats.id 1 _em_diffraction_stats.details 'Phases were determined by placing 4 ideal helix fragments. These were extended by chain tracing and density modifications.' _em_diffraction_stats.image_processing_id 1 _em_diffraction_stats.fourier_space_coverage 98.87 _em_diffraction_stats.high_resolution 1.5 _em_diffraction_stats.num_intensities_measured 416133 _em_diffraction_stats.num_structure_factors 39303 _em_diffraction_stats.overall_phase_error 20 _em_diffraction_stats.overall_phase_residual ? _em_diffraction_stats.phase_error_rejection_criteria None _em_diffraction_stats.r_merge 0.277 _em_diffraction_stats.r_sym 0.087 # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units MEGADALTONS _em_entity_assembly_molwt.value 0.028 # _em_entity_assembly_naturalsource.id 1 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 37998 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Parengyodontium album' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details 'Binned by 2.' # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 0.001 _em_image_recording.average_exposure_time 0.5 _em_image_recording.details '0.15 degrees per second, 0.5 second readout, 30 to -30 degrees' _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'FEI FALCON IV (4k x 4k)' _em_image_recording.num_diffraction_images 840 _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 1 _em_image_recording.avg_electron_dose_per_subtomogram ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'IMAGE ACQUISITION' ? ? ? ? ? 1 2 MASKING ? ? ? ? ? ? 3 'CTF CORRECTION' ? ? ? 1 ? ? 4 'LAYERLINE INDEXING' ? ? ? ? ? ? 5 'DIFFRACTION INDEXING' ? ? ? ? ? ? 6 'MODEL FITTING' ? ? ? ? 1 ? 7 OTHER ? ? ? ? ? ? 8 'MODEL REFINEMENT' ? REFMAC ? ? 1 ? 9 'MOLECULAR REPLACEMENT' ? ? ? 1 ? ? 10 'LATTICE DISTORTION CORRECTION' ? ? ? 1 ? ? 11 'SYMMETRY DETERMINATION' ? ? ? 1 ? ? 12 'CRYSTALLOGRAPHY MERGING' ? AIMLESS ? 1 ? ? 13 RECONSTRUCTION ? REFMAC ? 1 ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration 5 _em_specimen.details 'Milled microcrystals' _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Howard Hughes Medical Institute (HHMI)' 'United States' ? 1 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' P41GM136508 2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '5-amino-2,4,6-triiodobenzene-1,3-dicarboxylic acid' I3C 3 'CALCIUM ION' CA 4 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #