HEADER VIRAL PROTEIN/IMMUNE SYSTEM 22-OCT-21 7SKZ TITLE CRYSTAL STRUCTURE OF VN01H1 FAB IN COMPLEX WITH SARS-COV-2 S FUSION TITLE 2 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRO-SER-LYS-ARG-SER-PHE-ILE-GLU-ASP-LEU-LEU-PHE-ASN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HEAVY CHAIN OF VN01H1 FAB; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: LIGHT CHAIN OF VN01H1 FAB; COMPND 11 CHAIN: L; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 4 2; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_COMMON: HUMAN; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 11 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_COMMON: HUMAN; SOURCE 16 ORGANISM_TAXID: 9606; SOURCE 17 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 18 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS SARS-COV-2 SPIKE, COVID-19, FUSION PEPTIDE, FAB, VIRAL PROTEIN, VIRAL KEYWDS 2 PROTEIN-IMMUNE SYSTEM COMPLEX, STRUCTURAL GENOMICS, SEATTLE KEYWDS 3 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, SSGCID EXPDTA X-RAY DIFFRACTION AUTHOR M.A.TORTORICI,D.VEESLER,SEATTLE STRUCTURAL GENOMICS CENTER FOR AUTHOR 2 INFECTIOUS DISEASE (SSGCID) REVDAT 5 18-OCT-23 7SKZ 1 REMARK REVDAT 4 24-AUG-22 7SKZ 1 JRNL REVDAT 3 03-AUG-22 7SKZ 1 COMPND JRNL REMARK ATOM REVDAT 2 27-JUL-22 7SKZ 1 SOURCE REVDAT 1 20-JUL-22 7SKZ 0 JRNL AUTH J.S.LOW,J.JERAK,M.A.TORTORICI,M.MCCALLUM,D.PINTO,A.CASSOTTA, JRNL AUTH 2 M.FOGLIERINI,F.MELE,R.ABDELNABI,B.WEYNAND,J.NOACK, JRNL AUTH 3 M.MONTIEL-RUIZ,S.BIANCHI,F.BENIGNI,N.SPRUGASCI,A.JOSHI, JRNL AUTH 4 J.E.BOWEN,C.STEWART,M.REXHEPAJ,A.C.WALLS,D.JARROSSAY, JRNL AUTH 5 D.MORONE,P.PAPARODITIS,C.GARZONI,P.FERRARI,A.CESCHI,J.NEYTS, JRNL AUTH 6 L.A.PURCELL,G.SNELL,D.CORTI,A.LANZAVECCHIA,D.VEESLER, JRNL AUTH 7 F.SALLUSTO JRNL TITL ACE2-BINDING EXPOSES THE SARS-COV-2 FUSION PEPTIDE TO JRNL TITL 2 BROADLY NEUTRALIZING CORONAVIRUS ANTIBODIES. JRNL REF SCIENCE V. 377 735 2022 JRNL REFN ESSN 1095-9203 JRNL PMID 35857703 JRNL DOI 10.1126/SCIENCE.ABQ2679 REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 46943 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.160 REMARK 3 FREE R VALUE TEST SET COUNT : 2422 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.2400 - 4.7800 0.99 2668 158 0.1807 0.2040 REMARK 3 2 4.7800 - 3.8000 0.99 2609 169 0.1344 0.1640 REMARK 3 3 3.8000 - 3.3200 0.99 2623 132 0.1577 0.1976 REMARK 3 4 3.3200 - 3.0100 1.00 2659 129 0.1756 0.2379 REMARK 3 5 3.0100 - 2.8000 1.00 2589 184 0.1935 0.2447 REMARK 3 6 2.8000 - 2.6300 1.00 2612 143 0.1986 0.2321 REMARK 3 7 2.6300 - 2.5000 1.00 2636 146 0.2162 0.2795 REMARK 3 8 2.5000 - 2.3900 1.00 2583 154 0.2225 0.2978 REMARK 3 9 2.3900 - 2.3000 1.00 2668 116 0.2281 0.2775 REMARK 3 10 2.3000 - 2.2200 1.00 2591 144 0.2314 0.2582 REMARK 3 11 2.2200 - 2.1500 1.00 2615 131 0.2448 0.2780 REMARK 3 12 2.1500 - 2.0900 1.00 2616 147 0.2577 0.3180 REMARK 3 13 2.0900 - 2.0300 1.00 2604 131 0.2888 0.3061 REMARK 3 14 2.0300 - 1.9800 1.00 2635 132 0.3249 0.3762 REMARK 3 15 1.9800 - 1.9400 1.00 2604 142 0.3537 0.3824 REMARK 3 16 1.9400 - 1.9000 1.00 2602 140 0.3781 0.3633 REMARK 3 17 1.9000 - 1.8600 0.99 2607 124 0.3749 0.3665 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.300 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 813 THROUGH 824 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.3607 -10.1293 32.3290 REMARK 3 T TENSOR REMARK 3 T11: 0.3636 T22: 0.8331 REMARK 3 T33: 0.6108 T12: 0.0485 REMARK 3 T13: 0.1278 T23: -0.1623 REMARK 3 L TENSOR REMARK 3 L11: 5.2474 L22: 2.5207 REMARK 3 L33: 7.2046 L12: 0.4887 REMARK 3 L13: -2.5025 L23: -0.7353 REMARK 3 S TENSOR REMARK 3 S11: -0.0069 S12: -1.8005 S13: 0.5756 REMARK 3 S21: 0.4805 S22: 0.5110 S23: 0.0575 REMARK 3 S31: -0.1454 S32: 0.8901 S33: -0.5120 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 1 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.8753 -11.0995 24.3608 REMARK 3 T TENSOR REMARK 3 T11: 0.2721 T22: 0.3233 REMARK 3 T33: 0.5741 T12: 0.0444 REMARK 3 T13: -0.0579 T23: -0.0810 REMARK 3 L TENSOR REMARK 3 L11: 4.4230 L22: 2.2012 REMARK 3 L33: 3.0594 L12: 0.2330 REMARK 3 L13: -0.5809 L23: -0.1012 REMARK 3 S TENSOR REMARK 3 S11: -0.1760 S12: -0.5796 S13: 0.5338 REMARK 3 S21: 0.3130 S22: 0.0109 S23: -0.2516 REMARK 3 S31: -0.1078 S32: -0.0384 S33: 0.1485 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 122 THROUGH 226) REMARK 3 ORIGIN FOR THE GROUP (A): 43.7561 -2.3696 5.0107 REMARK 3 T TENSOR REMARK 3 T11: 0.2692 T22: 0.2291 REMARK 3 T33: 0.7281 T12: 0.0197 REMARK 3 T13: -0.0831 T23: -0.0284 REMARK 3 L TENSOR REMARK 3 L11: 1.0536 L22: 4.7127 REMARK 3 L33: 1.9906 L12: 0.7868 REMARK 3 L13: -0.1823 L23: -2.7820 REMARK 3 S TENSOR REMARK 3 S11: -0.0523 S12: -0.1188 S13: 0.0753 REMARK 3 S21: 0.2003 S22: -0.0793 S23: -0.2094 REMARK 3 S31: -0.1039 S32: 0.1596 S33: 0.1232 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 1 THROUGH 129 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.8552 -9.3458 3.5511 REMARK 3 T TENSOR REMARK 3 T11: 0.2591 T22: 0.2719 REMARK 3 T33: 0.7036 T12: -0.0044 REMARK 3 T13: -0.0774 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 2.4121 L22: 0.7489 REMARK 3 L33: 0.7367 L12: 0.3262 REMARK 3 L13: -0.8395 L23: -0.1066 REMARK 3 S TENSOR REMARK 3 S11: -0.0349 S12: 0.0510 S13: 0.1836 REMARK 3 S21: 0.0089 S22: 0.0156 S23: 0.1003 REMARK 3 S31: -0.0031 S32: -0.1660 S33: 0.0055 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 130 THROUGH 215 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.3884 -10.5536 -9.4209 REMARK 3 T TENSOR REMARK 3 T11: 0.3064 T22: 0.2562 REMARK 3 T33: 0.7718 T12: -0.0401 REMARK 3 T13: -0.0149 T23: -0.0218 REMARK 3 L TENSOR REMARK 3 L11: 2.3078 L22: 2.4591 REMARK 3 L33: 2.2372 L12: -1.0445 REMARK 3 L13: -0.1224 L23: -0.4267 REMARK 3 S TENSOR REMARK 3 S11: -0.1006 S12: 0.2726 S13: -0.1462 REMARK 3 S21: -0.2176 S22: 0.0499 S23: -0.2502 REMARK 3 S31: 0.1849 S32: 0.1670 S33: 0.0562 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7SKZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-OCT-21. REMARK 100 THE DEPOSITION ID IS D_1000260470. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-APR-21 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9774 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46943 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 46.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.60000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 7R6W REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M POTASSIUM ACETATE, 20% (W/V) PEG REMARK 280 3350, 0.2 M POTASSIUM CHLORIDE, 0.05 M HEPES-NAOH PH 7.5, 35% (V/ REMARK 280 V) PENTAERYTHRITOL PROPOXYLATE 5/4/PO/OH, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 76.46150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.35650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 76.46150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.35650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 812 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 814 CG CD CE NZ REMARK 470 PHE A 817 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE A 818 CG1 CG2 CD1 REMARK 470 SER H 21 OG REMARK 470 LYS H 43 CG CD CE NZ REMARK 470 LYS H 65 CG CD CE NZ REMARK 470 LYS H 76 CG CD CE NZ REMARK 470 GLU H 89 CG CD OE1 OE2 REMARK 470 LYS H 211 CG CD CE NZ REMARK 470 LYS H 216 CG CD CE NZ REMARK 470 ARG L 24 CG CD NE CZ NH1 NH2 REMARK 470 GLU L 70 CG CD OE1 OE2 REMARK 470 GLU L 81 CG CD OE1 OE2 REMARK 470 LYS L 127 CG CD CE NZ REMARK 470 LEU L 155 CG CD1 CD2 REMARK 470 LYS L 189 CG CD CE NZ REMARK 470 LYS L 191 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH H 369 O HOH H 439 1.95 REMARK 500 O HOH H 421 O HOH L 441 2.00 REMARK 500 O HOH L 348 O HOH L 450 2.02 REMARK 500 O HOH L 421 O HOH L 445 2.04 REMARK 500 O HOH H 373 O HOH H 452 2.06 REMARK 500 O HOH H 396 O HOH L 401 2.08 REMARK 500 O HOH H 320 O HOH H 457 2.08 REMARK 500 O HOH H 396 O HOH L 355 2.10 REMARK 500 O HOH H 302 O HOH H 438 2.10 REMARK 500 O HOH H 373 O HOH H 429 2.10 REMARK 500 O HOH H 326 O HOH H 427 2.11 REMARK 500 O HOH H 396 O HOH H 469 2.13 REMARK 500 O HOH H 457 O HOH L 431 2.13 REMARK 500 O HOH L 369 O HOH L 460 2.14 REMARK 500 O HOH H 362 O HOH H 444 2.14 REMARK 500 O HOH H 384 O HOH H 441 2.14 REMARK 500 O HOH H 301 O HOH H 429 2.15 REMARK 500 O HOH H 429 O HOH H 452 2.17 REMARK 500 O HOH L 413 O HOH L 454 2.18 REMARK 500 O HOH H 369 O HOH H 398 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH H 413 O HOH H 456 4555 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR H 170 -33.15 -130.13 REMARK 500 SER L 30 -122.90 51.64 REMARK 500 ALA L 51 -39.14 70.18 REMARK 500 ALA L 84 173.15 179.74 REMARK 500 ASN L 139 66.33 61.94 REMARK 500 REMARK 500 REMARK: NULL DBREF 7SKZ A 812 824 PDB 7SKZ 7SKZ 812 824 DBREF 7SKZ H 1 226 PDB 7SKZ 7SKZ 1 226 DBREF 7SKZ L 1 215 PDB 7SKZ 7SKZ 1 215 SEQRES 1 A 13 PRO SER LYS ARG SER PHE ILE GLU ASP LEU LEU PHE ASN SEQRES 1 H 226 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL LEU SEQRES 2 H 226 PRO GLY GLY SER LEU ARG LEU SER CYS SER ALA SER GLY SEQRES 3 H 226 PHE THR PHE SER ASP PHE SER MET HIS TRP VAL ARG GLN SEQRES 4 H 226 SER PRO GLY LYS GLY LEU GLU TYR VAL SER ALA ILE THR SEQRES 5 H 226 SER SER GLY SER SER THR TYR TYR PRO ASP SER VAL LYS SEQRES 6 H 226 GLY ARG PHE THR ILE SER ARG ASP ASN SER LYS ASN THR SEQRES 7 H 226 LEU TYR LEU GLN MET GLY SER LEU ARG VAL GLU ASP THR SEQRES 8 H 226 ALA VAL TYR TRP CYS VAL LYS ASN SER ASP VAL PHE ARG SEQRES 9 H 226 PHE PRO HIS LEU TYR PHE ASP VAL TRP GLY ARG GLY THR SEQRES 10 H 226 LEU VAL THR VAL SER SER ALA SER THR LYS GLY PRO SER SEQRES 11 H 226 VAL PHE PRO LEU ALA PRO SER SER LYS SER THR SER GLY SEQRES 12 H 226 GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE SEQRES 13 H 226 PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU SEQRES 14 H 226 THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SEQRES 15 H 226 SER GLY LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SEQRES 16 H 226 SER SER SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL SEQRES 17 H 226 ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS ARG VAL SEQRES 18 H 226 GLU PRO LYS SER CYS SEQRES 1 L 215 ASP ILE VAL MET THR GLN SER PRO ALA THR LEU SER VAL SEQRES 2 L 215 SER PRO GLY ASP ARG ALA THR LEU SER CYS ARG ALA SER SEQRES 3 L 215 GLN SER VAL SER SER ASN LEU ALA TRP TYR GLN GLN LYS SEQRES 4 L 215 PRO GLY GLN ALA PRO ARG LEU LEU ILE TYR GLY ALA SER SEQRES 5 L 215 THR ARG ALA ALA GLY ILE PRO ALA ARG PHE SER GLY SER SEQRES 6 L 215 GLY SER GLY THR GLU PHE THR LEU THR ILE SER SER LEU SEQRES 7 L 215 GLN SER GLU ASP PHE ALA VAL TYR TYR CYS GLN GLN TYR SEQRES 8 L 215 ASP ASN TRP PRO SER ILE THR PHE GLY GLN GLY THR ARG SEQRES 9 L 215 LEU GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE SEQRES 10 L 215 ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR SEQRES 11 L 215 ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG SEQRES 12 L 215 GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SEQRES 13 L 215 SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER SEQRES 14 L 215 LYS ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SEQRES 15 L 215 SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS SEQRES 16 L 215 GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SEQRES 17 L 215 SER PHE ASN ARG GLY GLU CYS FORMUL 4 HOH *347(H2 O) HELIX 1 AA1 SER A 813 ASN A 824 1 12 HELIX 2 AA2 THR H 28 PHE H 32 5 5 HELIX 3 AA3 ARG H 87 THR H 91 5 5 HELIX 4 AA4 ASP H 101 PHE H 105 5 5 HELIX 5 AA5 SER H 137 LYS H 139 5 3 HELIX 6 AA6 SER H 166 ALA H 168 5 3 HELIX 7 AA7 SER H 197 LEU H 199 5 3 HELIX 8 AA8 LYS H 211 ASN H 214 5 4 HELIX 9 AA9 GLN L 79 PHE L 83 5 5 HELIX 10 AB1 SER L 122 SER L 128 1 7 HELIX 11 AB2 LYS L 184 GLU L 188 1 5 SHEET 1 AA1 4 GLN H 3 GLY H 8 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O SER H 25 N GLN H 3 SHEET 3 AA1 4 THR H 78 MET H 83 -1 O MET H 83 N LEU H 18 SHEET 4 AA1 4 PHE H 68 ASP H 73 -1 N SER H 71 O TYR H 80 SHEET 1 AA2 6 GLY H 10 VAL H 12 0 SHEET 2 AA2 6 THR H 117 VAL H 121 1 O THR H 120 N GLY H 10 SHEET 3 AA2 6 ALA H 92 ASN H 99 -1 N TYR H 94 O THR H 117 SHEET 4 AA2 6 MET H 34 SER H 40 -1 N VAL H 37 O TRP H 95 SHEET 5 AA2 6 GLY H 44 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 AA2 6 THR H 58 TYR H 59 -1 O TYR H 59 N ALA H 50 SHEET 1 AA3 4 GLY H 10 VAL H 12 0 SHEET 2 AA3 4 THR H 117 VAL H 121 1 O THR H 120 N GLY H 10 SHEET 3 AA3 4 ALA H 92 ASN H 99 -1 N TYR H 94 O THR H 117 SHEET 4 AA3 4 PHE H 110 TRP H 113 -1 O VAL H 112 N LYS H 98 SHEET 1 AA4 4 SER H 130 LEU H 134 0 SHEET 2 AA4 4 THR H 145 TYR H 155 -1 O LEU H 151 N PHE H 132 SHEET 3 AA4 4 TYR H 186 PRO H 195 -1 O LEU H 188 N VAL H 152 SHEET 4 AA4 4 VAL H 173 THR H 175 -1 N HIS H 174 O VAL H 191 SHEET 1 AA5 4 THR H 141 SER H 142 0 SHEET 2 AA5 4 THR H 145 TYR H 155 -1 O THR H 145 N SER H 142 SHEET 3 AA5 4 TYR H 186 PRO H 195 -1 O LEU H 188 N VAL H 152 SHEET 4 AA5 4 VAL H 179 LEU H 180 -1 N VAL H 179 O SER H 187 SHEET 1 AA6 3 THR H 161 TRP H 164 0 SHEET 2 AA6 3 ILE H 205 HIS H 210 -1 O ASN H 207 N SER H 163 SHEET 3 AA6 3 THR H 215 ARG H 220 -1 O VAL H 217 N VAL H 208 SHEET 1 AA7 4 MET L 4 SER L 7 0 SHEET 2 AA7 4 ALA L 19 ALA L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AA7 4 GLU L 70 ILE L 75 -1 O PHE L 71 N CYS L 23 SHEET 4 AA7 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AA8 6 THR L 10 VAL L 13 0 SHEET 2 AA8 6 THR L 103 ILE L 107 1 O GLU L 106 N LEU L 11 SHEET 3 AA8 6 ALA L 84 ASN L 93 -1 N ALA L 84 O LEU L 105 SHEET 4 AA8 6 LEU L 33 GLN L 38 -1 N ALA L 34 O GLN L 89 SHEET 5 AA8 6 ARG L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AA8 6 THR L 53 ARG L 54 -1 O THR L 53 N TYR L 49 SHEET 1 AA9 4 THR L 10 VAL L 13 0 SHEET 2 AA9 4 THR L 103 ILE L 107 1 O GLU L 106 N LEU L 11 SHEET 3 AA9 4 ALA L 84 ASN L 93 -1 N ALA L 84 O LEU L 105 SHEET 4 AA9 4 SER L 96 PHE L 99 -1 O THR L 98 N GLN L 90 SHEET 1 AB1 4 SER L 115 PHE L 119 0 SHEET 2 AB1 4 THR L 130 PHE L 140 -1 O ASN L 138 N SER L 115 SHEET 3 AB1 4 TYR L 174 SER L 183 -1 O LEU L 182 N ALA L 131 SHEET 4 AB1 4 SER L 160 VAL L 164 -1 N GLN L 161 O THR L 179 SHEET 1 AB2 4 ALA L 154 LEU L 155 0 SHEET 2 AB2 4 LYS L 146 VAL L 151 -1 N VAL L 151 O ALA L 154 SHEET 3 AB2 4 VAL L 192 THR L 198 -1 O GLU L 196 N GLN L 148 SHEET 4 AB2 4 VAL L 206 ASN L 211 -1 O VAL L 206 N VAL L 197 SSBOND 1 CYS H 22 CYS H 96 1555 1555 2.05 SSBOND 2 CYS H 150 CYS H 206 1555 1555 2.05 SSBOND 3 CYS H 226 CYS L 215 1555 1555 2.06 SSBOND 4 CYS L 23 CYS L 88 1555 1555 2.09 SSBOND 5 CYS L 135 CYS L 195 1555 1555 2.05 CISPEP 1 PHE H 105 PRO H 106 0 9.31 CISPEP 2 PHE H 156 PRO H 157 0 -7.00 CISPEP 3 GLU H 158 PRO H 159 0 0.38 CISPEP 4 SER L 7 PRO L 8 0 -7.55 CISPEP 5 TRP L 94 PRO L 95 0 10.94 CISPEP 6 TYR L 141 PRO L 142 0 0.14 CRYST1 152.923 60.713 61.110 90.00 93.62 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006539 0.000000 0.000414 0.00000 SCALE2 0.000000 0.016471 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016397 0.00000