HEADER DNA 24-OCT-21 7SLL TITLE [U:AG+:U--PH 9.5] METAL-MEDIATED DNA BASE PAIR IN TENSEGRITY TRIANGLE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*UP*TP*GP*GP*AP*CP*AP*TP*CP*A)- COMPND 4 3'); COMPND 5 CHAIN: A; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(P*CP*CP*AP*UP*AP*CP*A)-3'); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'-D(P*GP*GP*CP*TP*GP*CP*T)-3'); COMPND 13 CHAIN: C; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'); COMPND 17 CHAIN: D; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 8 ORGANISM_TAXID: 32630; SOURCE 9 MOL_ID: 3; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630; SOURCE 13 MOL_ID: 4; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 16 ORGANISM_TAXID: 32630 KEYWDS TENSEGRITY TRIANGLE, SELF-ASSEMBLING CRYSTAL, METAL-MEDIATED KEYWDS 2 MISMATCH, DNA EXPDTA X-RAY DIFFRACTION AUTHOR B.LU,S.VECCHIONI,N.C.SEEMAN,R.SHA,Y.P.OHAYON REVDAT 3 30-AUG-23 7SLL 1 JRNL REVDAT 2 09-AUG-23 7SLL 1 JRNL REVDAT 1 26-OCT-22 7SLL 0 JRNL AUTH B.LU,Y.P.OHAYON,K.WOLOSZYN,C.F.YANG,J.B.YODER, JRNL AUTH 2 L.J.ROTHSCHILD,S.J.WIND,W.A.HENDRICKSON,C.MAO,N.C.SEEMAN, JRNL AUTH 3 J.W.CANARY,R.SHA,S.VECCHIONI JRNL TITL HETEROBIMETALLIC BASE PAIR PROGRAMMING IN DESIGNER 3D DNA JRNL TITL 2 CRYSTALS. JRNL REF J.AM.CHEM.SOC. V. 145 17945 2023 JRNL REFN ESSN 1520-5126 JRNL PMID 37530628 JRNL DOI 10.1021/JACS.3C05478 REMARK 2 REMARK 2 RESOLUTION. 3.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 68.6 REMARK 3 NUMBER OF REFLECTIONS : 2789 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.480 REMARK 3 FREE R VALUE TEST SET COUNT : 125 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.501 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 47.927 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 274.0 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 318.3 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 956 REMARK 3 ANGLE : 1.746 1467 REMARK 3 CHIRALITY : 0.076 165 REMARK 3 PLANARITY : 0.007 42 REMARK 3 DIHEDRAL : 39.188 399 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 1:21 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.791 -3.387 23.499 REMARK 3 T TENSOR REMARK 3 T11: 3.9333 T22: 3.1367 REMARK 3 T33: 2.4046 T12: 0.0501 REMARK 3 T13: -0.3463 T23: -0.0557 REMARK 3 L TENSOR REMARK 3 L11: 3.7048 L22: 1.9911 REMARK 3 L33: 2.2084 L12: -1.6773 REMARK 3 L13: -1.1499 L23: -5.8989 REMARK 3 S TENSOR REMARK 3 S11: -0.7293 S12: -0.1901 S13: -0.5975 REMARK 3 S21: 2.0825 S22: 2.3960 S23: 0.5400 REMARK 3 S31: -1.0459 S32: -1.8928 S33: -2.0464 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN B AND RESID 1:7 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.970 -0.556 22.231 REMARK 3 T TENSOR REMARK 3 T11: 2.3036 T22: 4.0962 REMARK 3 T33: 2.5082 T12: -0.5521 REMARK 3 T13: -0.8907 T23: 1.1299 REMARK 3 L TENSOR REMARK 3 L11: 7.9507 L22: 1.9812 REMARK 3 L33: 8.9925 L12: 0.7520 REMARK 3 L13: -3.3234 L23: 3.1128 REMARK 3 S TENSOR REMARK 3 S11: 1.4700 S12: 5.6843 S13: 0.9127 REMARK 3 S21: 2.4475 S22: 2.8536 S23: 0.7265 REMARK 3 S31: 2.3506 S32: -4.6179 S33: -3.2339 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN C AND RESID 8:14 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.891 -20.699 35.532 REMARK 3 T TENSOR REMARK 3 T11: 3.3346 T22: 2.5802 REMARK 3 T33: 2.6266 T12: 0.1959 REMARK 3 T13: 0.3049 T23: 0.3002 REMARK 3 L TENSOR REMARK 3 L11: 2.0610 L22: 2.0000 REMARK 3 L33: 2.1400 L12: 4.2697 REMARK 3 L13: -3.8344 L23: -4.0833 REMARK 3 S TENSOR REMARK 3 S11: 1.0119 S12: -1.4697 S13: 0.2031 REMARK 3 S21: -1.0945 S22: 0.2174 S23: 3.2413 REMARK 3 S31: -3.1306 S32: -2.1535 S33: -1.6727 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN D AND RESID 1:7 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.679 19.342 8.359 REMARK 3 T TENSOR REMARK 3 T11: 5.4492 T22: 2.0028 REMARK 3 T33: 2.4540 T12: -0.2417 REMARK 3 T13: 1.8502 T23: 1.1950 REMARK 3 L TENSOR REMARK 3 L11: 8.0850 L22: 2.0929 REMARK 3 L33: 2.1147 L12: -4.8879 REMARK 3 L13: -0.3531 L23: 1.8898 REMARK 3 S TENSOR REMARK 3 S11: -3.4842 S12: 2.9723 S13: -3.4761 REMARK 3 S21: -4.7179 S22: -2.3217 S23: -0.7550 REMARK 3 S31: 1.5340 S32: -3.1390 S33: 2.6716 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7SLL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-OCT-21. REMARK 100 THE DEPOSITION ID IS D_1000260692. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00743 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 2814 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.730 REMARK 200 RESOLUTION RANGE LOW (A) : 53.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.0 REMARK 200 DATA REDUNDANCY : 10.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.15 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: RHOMBOHEDRAL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 8.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS, MAGNESIUM SULFATE, SILVER REMARK 280 NITRATE, PH 9.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 53.06950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.63969 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 30.94967 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 53.06950 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 30.63969 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 30.94967 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 53.06950 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 30.63969 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 30.94967 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 61.27938 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 61.89933 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 61.27938 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 61.89933 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 61.27938 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 61.89933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG A 10 N9 DG A 10 C4 -0.055 REMARK 500 DT A 11 C1' DT A 11 N1 0.093 REMARK 500 DU A 12 C3' DU A 12 C2' -0.275 REMARK 500 DU A 12 C2' DU A 12 C1' 0.122 REMARK 500 DU A 12 O4' DU A 12 C1' -0.092 REMARK 500 DU A 12 O3' DU A 12 C3' 0.096 REMARK 500 DU A 12 C2 DU A 12 O2 -0.058 REMARK 500 DU A 12 C4 DU A 12 O4 -0.094 REMARK 500 DU A 12 N1 DU A 12 C2 0.129 REMARK 500 DU A 12 N1 DU A 12 C6 0.102 REMARK 500 DU A 12 C2 DU A 12 N3 0.108 REMARK 500 DU A 12 C5 DU A 12 C6 0.171 REMARK 500 DA B 3 C5 DA B 3 C6 0.054 REMARK 500 DA B 3 C5 DA B 3 N7 0.045 REMARK 500 DA B 3 N9 DA B 3 C4 -0.044 REMARK 500 DU B 4 P DU B 4 O5' 0.078 REMARK 500 DU B 4 C4' DU B 4 C3' 0.080 REMARK 500 DU B 4 C3' DU B 4 C2' -0.279 REMARK 500 DU B 4 C2' DU B 4 C1' 0.118 REMARK 500 DU B 4 O4' DU B 4 C1' -0.099 REMARK 500 DU B 4 O3' DU B 4 C3' 0.086 REMARK 500 DU B 4 N1 DU B 4 C2 0.157 REMARK 500 DU B 4 N1 DU B 4 C6 0.086 REMARK 500 DU B 4 C2 DU B 4 N3 0.146 REMARK 500 DU B 4 N3 DU B 4 C4 0.130 REMARK 500 DU B 4 C5 DU B 4 C6 0.134 REMARK 500 DC D 1 P DC D 1 OP3 -0.128 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA A 2 O4' - C1' - N9 ANGL. DEV. = 4.2 DEGREES REMARK 500 DC A 7 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DG A 10 O4' - C1' - C2' ANGL. DEV. = 3.6 DEGREES REMARK 500 DT A 11 O4' - C1' - N1 ANGL. DEV. = 8.1 DEGREES REMARK 500 DU A 12 O4' - C4' - C3' ANGL. DEV. = -4.1 DEGREES REMARK 500 DU A 12 C5' - C4' - O4' ANGL. DEV. = 11.5 DEGREES REMARK 500 DU A 12 C4' - C3' - C2' ANGL. DEV. = 6.0 DEGREES REMARK 500 DU A 12 O4' - C1' - N1 ANGL. DEV. = 6.5 DEGREES REMARK 500 DU A 12 C6 - N1 - C2 ANGL. DEV. = -10.0 DEGREES REMARK 500 DU A 12 N1 - C2 - N3 ANGL. DEV. = 13.7 DEGREES REMARK 500 DU A 12 C2 - N3 - C4 ANGL. DEV. = -11.7 DEGREES REMARK 500 DU A 12 N3 - C4 - C5 ANGL. DEV. = 8.5 DEGREES REMARK 500 DU A 12 N1 - C2 - O2 ANGL. DEV. = -4.7 DEGREES REMARK 500 DU A 12 N3 - C2 - O2 ANGL. DEV. = -8.9 DEGREES REMARK 500 DU A 12 C5 - C4 - O4 ANGL. DEV. = -5.5 DEGREES REMARK 500 DU B 4 OP1 - P - OP2 ANGL. DEV. = -11.4 DEGREES REMARK 500 DU B 4 C2 - N3 - C4 ANGL. DEV. = -6.6 DEGREES REMARK 500 DU B 4 N3 - C4 - C5 ANGL. DEV. = 9.0 DEGREES REMARK 500 DU B 4 C4 - C5 - C6 ANGL. DEV. = -5.3 DEGREES REMARK 500 DU B 4 C5 - C6 - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 DU B 4 N3 - C4 - O4 ANGL. DEV. = 6.1 DEGREES REMARK 500 DU B 4 C5 - C4 - O4 ANGL. DEV. = -15.0 DEGREES REMARK 500 DU B 4 C6 - N1 - C1' ANGL. DEV. = -13.7 DEGREES REMARK 500 DU B 4 C2 - N1 - C1' ANGL. DEV. = 15.2 DEGREES REMARK 500 DC B 6 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 DA B 7 O4' - C1' - N9 ANGL. DEV. = 6.3 DEGREES REMARK 500 DC D 1 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DG D 3 C3' - C2' - C1' ANGL. DEV. = -5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG B 101 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DU A 12 O4 REMARK 620 2 DA B 3 N6 68.5 REMARK 620 3 DU B 4 N3 91.3 97.1 REMARK 620 4 DU B 4 O4 144.5 130.2 59.6 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7SD8 RELATED DB: PDB REMARK 900 SAME SEQUENCE, DIFFERENT METAL LIGAND REMARK 900 RELATED ID: 7SLJ RELATED DB: PDB REMARK 900 SAME SEQUENCE, DIFFERENT PH DBREF 7SLL A 1 21 PDB 7SLL 7SLL 1 21 DBREF 7SLL B 1 7 PDB 7SLL 7SLL 1 7 DBREF 7SLL C 8 14 PDB 7SLL 7SLL 8 14 DBREF 7SLL D 1 7 PDB 7SLL 7SLL 1 7 SEQRES 1 A 21 DG DA DG DC DA DG DC DC DT DG DT DU DT SEQRES 2 A 21 DG DG DA DC DA DT DC DA SEQRES 1 B 7 DC DC DA DU DA DC DA SEQRES 1 C 7 DG DG DC DT DG DC DT SEQRES 1 D 7 DC DT DG DA DT DG DT HET AG B 101 1 HETNAM AG SILVER ION FORMUL 5 AG AG 1+ LINK O4 DU A 12 AG AG B 101 1555 1555 2.35 LINK N6 DA B 3 AG AG B 101 1555 1555 2.65 LINK N3 DU B 4 AG AG B 101 1555 1555 2.68 LINK O4 DU B 4 AG AG B 101 1555 1555 2.04 CRYST1 106.139 106.139 92.849 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009422 0.005440 0.000000 0.00000 SCALE2 0.000000 0.010879 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010770 0.00000