HEADER VIRAL PROTEIN 24-OCT-21 7SLS TITLE HIV REVERSE TRANSCRIPTASE WITH COMPOUND PYR02 CAVEAT 7SLS 9PJ A 601 HAS WRONG CHIRALITY AT ATOM C2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: REVERSE TRANSCRIPTASE/RIBONUCLEASE H; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: EXORIBONUCLEASE H,P66 RT; COMPND 5 EC: 2.7.7.49,2.7.7.7,3.1.26.13,3.1.13.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1; SOURCE 3 ORGANISM_COMMON: HIV-1; SOURCE 4 ORGANISM_TAXID: 11676; SOURCE 5 GENE: GAG-POL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HIV, REVERSE TRANSCRIPTASE, RT, NNRTI, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.J.KLEIN,M.ZEBISCH,M.GU REVDAT 2 29-MAR-23 7SLS 1 JRNL REVDAT 1 23-NOV-22 7SLS 0 JRNL AUTH C.J.BALIBAR,D.J.KLEIN,B.ZAMLYNNY,T.L.DIAMOND,Z.FANG, JRNL AUTH 2 C.A.CHENEY,J.KRISTOFF,M.LU,M.BUKHTIYAROVA,Y.OU,M.XU,L.BA, JRNL AUTH 3 S.S.CARROLL,A.EL MARROUNI,J.F.FAY,A.FORSTER,S.L.GOH,M.GU, JRNL AUTH 4 D.KROSKY,D.I.S.ROSENBLOOM,P.SHETH,D.WANG,G.WU,M.ZEBISCH, JRNL AUTH 5 T.ZHAO,P.ZUCK,J.GROBLER,D.J.HAZUDA,B.J.HOWELL,A.CONVERSO JRNL TITL POTENT TARGETED ACTIVATOR OF CELL KILL MOLECULES ELIMINATE JRNL TITL 2 CELLS EXPRESSING HIV-1. JRNL REF SCI TRANSL MED V. 15 N2038 2023 JRNL REFN ESSN 1946-6242 JRNL PMID 36812345 JRNL DOI 10.1126/SCITRANSLMED.ABN2038 REMARK 2 REMARK 2 RESOLUTION. 2.08 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.8 (10-DEC-2020) REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.08 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 93.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 82.2 REMARK 3 NUMBER OF REFLECTIONS : 69946 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 3468 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 51 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.08 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.17 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 13.81 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 1399 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.3211 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1329 REMARK 3 BIN R VALUE (WORKING SET) : 0.3203 REMARK 3 BIN FREE R VALUE : 0.3367 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 70 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7755 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 322 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.07740 REMARK 3 B22 (A**2) : -0.83220 REMARK 3 B33 (A**2) : 0.90960 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.330 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.231 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.192 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.235 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.195 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 8045 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 10946 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2811 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 1339 ; 8.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 8045 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 1035 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6122 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.98 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.29 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.68 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7SLS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-OCT-21. REMARK 100 THE DEPOSITION ID IS D_1000260700. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69946 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.078 REMARK 200 RESOLUTION RANGE LOW (A) : 93.586 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 82.2 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.08 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.22 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: BUSTER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 950 MM SODIUM MALONATE PH 7.0, 100 MM REMARK 280 HEPES/NAOH PH 6.8, VAPOR DIFFUSION, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.72050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 77.72050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 58.86400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 77.12650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 58.86400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 77.12650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 77.72050 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 58.86400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 77.12650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 77.72050 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 58.86400 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 77.12650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 539 REMARK 465 LYS A 540 REMARK 465 GLY A 541 REMARK 465 ILE A 542 REMARK 465 GLY A 543 REMARK 465 GLY A 544 REMARK 465 ASN A 545 REMARK 465 GLU A 546 REMARK 465 GLN A 547 REMARK 465 VAL A 548 REMARK 465 ASP A 549 REMARK 465 LYS A 550 REMARK 465 LEU A 551 REMARK 465 VAL A 552 REMARK 465 SER A 553 REMARK 465 ALA A 554 REMARK 465 GLY A 555 REMARK 465 ILE A 556 REMARK 465 ARG A 557 REMARK 465 LYS A 558 REMARK 465 VAL A 559 REMARK 465 LEU A 560 REMARK 465 MET B 0 REMARK 465 PRO B 1 REMARK 465 ILE B 2 REMARK 465 SER B 3 REMARK 465 PRO B 4 REMARK 465 ILE B 5 REMARK 465 PRO B 217 REMARK 465 ASP B 218 REMARK 465 LYS B 219 REMARK 465 LYS B 220 REMARK 465 HIS B 221 REMARK 465 GLN B 222 REMARK 465 LYS B 223 REMARK 465 GLU B 224 REMARK 465 PRO B 225 REMARK 465 PRO B 226 REMARK 465 PHE B 227 REMARK 465 LEU B 228 REMARK 465 TRP B 229 REMARK 465 MET B 357 REMARK 465 ARG B 358 REMARK 465 GLY B 359 REMARK 465 ALA B 360 REMARK 465 HIS B 361 REMARK 465 LEU B 429 REMARK 465 GLU B 430 REMARK 465 LYS B 431 REMARK 465 GLU B 432 REMARK 465 PRO B 433 REMARK 465 ILE B 434 REMARK 465 VAL B 435 REMARK 465 GLY B 436 REMARK 465 ALA B 437 REMARK 465 GLU B 438 REMARK 465 THR B 439 REMARK 465 PHE B 440 REMARK 465 TYR B 441 REMARK 465 VAL B 442 REMARK 465 ASP B 443 REMARK 465 GLY B 444 REMARK 465 ALA B 445 REMARK 465 ALA B 446 REMARK 465 ASN B 447 REMARK 465 ARG B 448 REMARK 465 GLU B 449 REMARK 465 THR B 450 REMARK 465 LYS B 451 REMARK 465 LEU B 452 REMARK 465 GLY B 453 REMARK 465 LYS B 454 REMARK 465 ALA B 455 REMARK 465 GLY B 456 REMARK 465 TYR B 457 REMARK 465 VAL B 458 REMARK 465 THR B 459 REMARK 465 ASN B 460 REMARK 465 ARG B 461 REMARK 465 GLY B 462 REMARK 465 ARG B 463 REMARK 465 GLN B 464 REMARK 465 LYS B 465 REMARK 465 VAL B 466 REMARK 465 VAL B 467 REMARK 465 THR B 468 REMARK 465 LEU B 469 REMARK 465 THR B 470 REMARK 465 ASP B 471 REMARK 465 THR B 472 REMARK 465 THR B 473 REMARK 465 ASN B 474 REMARK 465 GLN B 475 REMARK 465 LYS B 476 REMARK 465 THR B 477 REMARK 465 GLU B 478 REMARK 465 LEU B 479 REMARK 465 GLN B 480 REMARK 465 ALA B 481 REMARK 465 ILE B 482 REMARK 465 TYR B 483 REMARK 465 LEU B 484 REMARK 465 ALA B 485 REMARK 465 LEU B 486 REMARK 465 GLN B 487 REMARK 465 ASP B 488 REMARK 465 SER B 489 REMARK 465 GLY B 490 REMARK 465 LEU B 491 REMARK 465 GLU B 492 REMARK 465 VAL B 493 REMARK 465 ASN B 494 REMARK 465 ILE B 495 REMARK 465 VAL B 496 REMARK 465 THR B 497 REMARK 465 ASP B 498 REMARK 465 SER B 499 REMARK 465 GLN B 500 REMARK 465 TYR B 501 REMARK 465 ALA B 502 REMARK 465 LEU B 503 REMARK 465 GLY B 504 REMARK 465 ILE B 505 REMARK 465 ILE B 506 REMARK 465 GLN B 507 REMARK 465 ALA B 508 REMARK 465 GLN B 509 REMARK 465 PRO B 510 REMARK 465 ASP B 511 REMARK 465 GLN B 512 REMARK 465 SER B 513 REMARK 465 GLU B 514 REMARK 465 SER B 515 REMARK 465 GLU B 516 REMARK 465 LEU B 517 REMARK 465 VAL B 518 REMARK 465 ASN B 519 REMARK 465 GLN B 520 REMARK 465 ILE B 521 REMARK 465 ILE B 522 REMARK 465 GLU B 523 REMARK 465 GLN B 524 REMARK 465 LEU B 525 REMARK 465 ILE B 526 REMARK 465 LYS B 527 REMARK 465 LYS B 528 REMARK 465 GLU B 529 REMARK 465 LYS B 530 REMARK 465 VAL B 531 REMARK 465 TYR B 532 REMARK 465 LEU B 533 REMARK 465 ALA B 534 REMARK 465 TRP B 535 REMARK 465 VAL B 536 REMARK 465 PRO B 537 REMARK 465 ALA B 538 REMARK 465 HIS B 539 REMARK 465 LYS B 540 REMARK 465 GLY B 541 REMARK 465 ILE B 542 REMARK 465 GLY B 543 REMARK 465 GLY B 544 REMARK 465 ASN B 545 REMARK 465 GLU B 546 REMARK 465 GLN B 547 REMARK 465 VAL B 548 REMARK 465 ASP B 549 REMARK 465 LYS B 550 REMARK 465 LEU B 551 REMARK 465 VAL B 552 REMARK 465 SER B 553 REMARK 465 ALA B 554 REMARK 465 GLY B 555 REMARK 465 ILE B 556 REMARK 465 ARG B 557 REMARK 465 LYS B 558 REMARK 465 VAL B 559 REMARK 465 LEU B 560 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 137 26.65 48.04 REMARK 500 MET A 184 -119.21 55.40 REMARK 500 ILE A 270 -25.71 -146.82 REMARK 500 GLU A 413 114.65 -23.27 REMARK 500 MET B 184 -119.56 57.60 REMARK 500 ASN B 418 63.24 -109.23 REMARK 500 THR B 419 112.44 -11.04 REMARK 500 LEU B 422 -18.52 77.99 REMARK 500 REMARK 500 REMARK: NULL DBREF 7SLS A 1 560 UNP P04585 POL_HV1H2 588 1147 DBREF 7SLS B 1 560 UNP P04585 POL_HV1H2 588 1147 SEQADV 7SLS MET A 0 UNP P04585 INITIATING METHIONINE SEQADV 7SLS MET B 0 UNP P04585 INITIATING METHIONINE SEQRES 1 A 561 MET PRO ILE SER PRO ILE GLU THR VAL PRO VAL LYS LEU SEQRES 2 A 561 LYS PRO GLY MET ASP GLY PRO LYS VAL LYS GLN TRP PRO SEQRES 3 A 561 LEU THR GLU GLU LYS ILE LYS ALA LEU VAL GLU ILE CYS SEQRES 4 A 561 THR GLU MET GLU LYS GLU GLY LYS ILE SER LYS ILE GLY SEQRES 5 A 561 PRO GLU ASN PRO TYR ASN THR PRO VAL PHE ALA ILE LYS SEQRES 6 A 561 LYS LYS ASP SER THR LYS TRP ARG LYS LEU VAL ASP PHE SEQRES 7 A 561 ARG GLU LEU ASN LYS ARG THR GLN ASP PHE TRP GLU VAL SEQRES 8 A 561 GLN LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS LYS LYS SEQRES 9 A 561 LYS SER VAL THR VAL LEU ASP VAL GLY ASP ALA TYR PHE SEQRES 10 A 561 SER VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR THR ALA SEQRES 11 A 561 PHE THR ILE PRO SER ILE ASN ASN GLU THR PRO GLY ILE SEQRES 12 A 561 ARG TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP LYS GLY SEQRES 13 A 561 SER PRO ALA ILE PHE GLN SER SER MET THR LYS ILE LEU SEQRES 14 A 561 GLU PRO PHE ARG LYS GLN ASN PRO ASP ILE VAL ILE TYR SEQRES 15 A 561 GLN TYR MET ASP ASP LEU TYR VAL GLY SER ASP LEU GLU SEQRES 16 A 561 ILE GLY GLN HIS ARG THR LYS ILE GLU GLU LEU ARG GLN SEQRES 17 A 561 HIS LEU LEU ARG TRP GLY LEU THR THR PRO ASP LYS LYS SEQRES 18 A 561 HIS GLN LYS GLU PRO PRO PHE LEU TRP MET GLY TYR GLU SEQRES 19 A 561 LEU HIS PRO ASP LYS TRP THR VAL GLN PRO ILE VAL LEU SEQRES 20 A 561 PRO GLU LYS ASP SER TRP THR VAL ASN ASP ILE GLN LYS SEQRES 21 A 561 LEU VAL GLY LYS LEU ASN TRP ALA SER GLN ILE TYR PRO SEQRES 22 A 561 GLY ILE LYS VAL ARG GLN LEU CYS LYS LEU LEU ARG GLY SEQRES 23 A 561 THR LYS ALA LEU THR GLU VAL ILE PRO LEU THR GLU GLU SEQRES 24 A 561 ALA GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE LEU LYS SEQRES 25 A 561 GLU PRO VAL HIS GLY VAL TYR TYR ASP PRO SER LYS ASP SEQRES 26 A 561 LEU ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY GLN TRP SEQRES 27 A 561 THR TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN LEU LYS SEQRES 28 A 561 THR GLY LYS TYR ALA ARG MET ARG GLY ALA HIS THR ASN SEQRES 29 A 561 ASP VAL LYS GLN LEU THR GLU ALA VAL GLN LYS ILE THR SEQRES 30 A 561 THR GLU SER ILE VAL ILE TRP GLY LYS THR PRO LYS PHE SEQRES 31 A 561 LYS LEU PRO ILE GLN LYS GLU THR TRP GLU THR TRP TRP SEQRES 32 A 561 THR GLU TYR TRP GLN ALA THR TRP ILE PRO GLU TRP GLU SEQRES 33 A 561 PHE VAL ASN THR PRO PRO LEU VAL LYS LEU TRP TYR GLN SEQRES 34 A 561 LEU GLU LYS GLU PRO ILE VAL GLY ALA GLU THR PHE TYR SEQRES 35 A 561 VAL ASP GLY ALA ALA ASN ARG GLU THR LYS LEU GLY LYS SEQRES 36 A 561 ALA GLY TYR VAL THR ASN ARG GLY ARG GLN LYS VAL VAL SEQRES 37 A 561 THR LEU THR ASP THR THR ASN GLN LYS THR GLU LEU GLN SEQRES 38 A 561 ALA ILE TYR LEU ALA LEU GLN ASP SER GLY LEU GLU VAL SEQRES 39 A 561 ASN ILE VAL THR ASP SER GLN TYR ALA LEU GLY ILE ILE SEQRES 40 A 561 GLN ALA GLN PRO ASP GLN SER GLU SER GLU LEU VAL ASN SEQRES 41 A 561 GLN ILE ILE GLU GLN LEU ILE LYS LYS GLU LYS VAL TYR SEQRES 42 A 561 LEU ALA TRP VAL PRO ALA HIS LYS GLY ILE GLY GLY ASN SEQRES 43 A 561 GLU GLN VAL ASP LYS LEU VAL SER ALA GLY ILE ARG LYS SEQRES 44 A 561 VAL LEU SEQRES 1 B 561 MET PRO ILE SER PRO ILE GLU THR VAL PRO VAL LYS LEU SEQRES 2 B 561 LYS PRO GLY MET ASP GLY PRO LYS VAL LYS GLN TRP PRO SEQRES 3 B 561 LEU THR GLU GLU LYS ILE LYS ALA LEU VAL GLU ILE CYS SEQRES 4 B 561 THR GLU MET GLU LYS GLU GLY LYS ILE SER LYS ILE GLY SEQRES 5 B 561 PRO GLU ASN PRO TYR ASN THR PRO VAL PHE ALA ILE LYS SEQRES 6 B 561 LYS LYS ASP SER THR LYS TRP ARG LYS LEU VAL ASP PHE SEQRES 7 B 561 ARG GLU LEU ASN LYS ARG THR GLN ASP PHE TRP GLU VAL SEQRES 8 B 561 GLN LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS LYS LYS SEQRES 9 B 561 LYS SER VAL THR VAL LEU ASP VAL GLY ASP ALA TYR PHE SEQRES 10 B 561 SER VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR THR ALA SEQRES 11 B 561 PHE THR ILE PRO SER ILE ASN ASN GLU THR PRO GLY ILE SEQRES 12 B 561 ARG TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP LYS GLY SEQRES 13 B 561 SER PRO ALA ILE PHE GLN SER SER MET THR LYS ILE LEU SEQRES 14 B 561 GLU PRO PHE ARG LYS GLN ASN PRO ASP ILE VAL ILE TYR SEQRES 15 B 561 GLN TYR MET ASP ASP LEU TYR VAL GLY SER ASP LEU GLU SEQRES 16 B 561 ILE GLY GLN HIS ARG THR LYS ILE GLU GLU LEU ARG GLN SEQRES 17 B 561 HIS LEU LEU ARG TRP GLY LEU THR THR PRO ASP LYS LYS SEQRES 18 B 561 HIS GLN LYS GLU PRO PRO PHE LEU TRP MET GLY TYR GLU SEQRES 19 B 561 LEU HIS PRO ASP LYS TRP THR VAL GLN PRO ILE VAL LEU SEQRES 20 B 561 PRO GLU LYS ASP SER TRP THR VAL ASN ASP ILE GLN LYS SEQRES 21 B 561 LEU VAL GLY LYS LEU ASN TRP ALA SER GLN ILE TYR PRO SEQRES 22 B 561 GLY ILE LYS VAL ARG GLN LEU CYS LYS LEU LEU ARG GLY SEQRES 23 B 561 THR LYS ALA LEU THR GLU VAL ILE PRO LEU THR GLU GLU SEQRES 24 B 561 ALA GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE LEU LYS SEQRES 25 B 561 GLU PRO VAL HIS GLY VAL TYR TYR ASP PRO SER LYS ASP SEQRES 26 B 561 LEU ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY GLN TRP SEQRES 27 B 561 THR TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN LEU LYS SEQRES 28 B 561 THR GLY LYS TYR ALA ARG MET ARG GLY ALA HIS THR ASN SEQRES 29 B 561 ASP VAL LYS GLN LEU THR GLU ALA VAL GLN LYS ILE THR SEQRES 30 B 561 THR GLU SER ILE VAL ILE TRP GLY LYS THR PRO LYS PHE SEQRES 31 B 561 LYS LEU PRO ILE GLN LYS GLU THR TRP GLU THR TRP TRP SEQRES 32 B 561 THR GLU TYR TRP GLN ALA THR TRP ILE PRO GLU TRP GLU SEQRES 33 B 561 PHE VAL ASN THR PRO PRO LEU VAL LYS LEU TRP TYR GLN SEQRES 34 B 561 LEU GLU LYS GLU PRO ILE VAL GLY ALA GLU THR PHE TYR SEQRES 35 B 561 VAL ASP GLY ALA ALA ASN ARG GLU THR LYS LEU GLY LYS SEQRES 36 B 561 ALA GLY TYR VAL THR ASN ARG GLY ARG GLN LYS VAL VAL SEQRES 37 B 561 THR LEU THR ASP THR THR ASN GLN LYS THR GLU LEU GLN SEQRES 38 B 561 ALA ILE TYR LEU ALA LEU GLN ASP SER GLY LEU GLU VAL SEQRES 39 B 561 ASN ILE VAL THR ASP SER GLN TYR ALA LEU GLY ILE ILE SEQRES 40 B 561 GLN ALA GLN PRO ASP GLN SER GLU SER GLU LEU VAL ASN SEQRES 41 B 561 GLN ILE ILE GLU GLN LEU ILE LYS LYS GLU LYS VAL TYR SEQRES 42 B 561 LEU ALA TRP VAL PRO ALA HIS LYS GLY ILE GLY GLY ASN SEQRES 43 B 561 GLU GLN VAL ASP LYS LEU VAL SER ALA GLY ILE ARG LYS SEQRES 44 B 561 VAL LEU HET 9PJ A 601 36 HETNAM 9PJ 5-(DIFLUOROMETHYL)-3-{[1-{[(3S)-5-FLUORO-2-METHYL-6- HETNAM 2 9PJ OXO-3,6-DIHYDROPYRIDIN-3-YL]METHYL}-6-OXO-4-(1,1,2,2- HETNAM 3 9PJ TETRAFLUOROETHYL)-1,6-DIHYDROPYRIMIDIN-5-YL]OXY}-2- HETNAM 4 9PJ METHYLBENZONITRILE FORMUL 3 9PJ C22 H15 F7 N4 O3 FORMUL 4 HOH *322(H2 O) HELIX 1 AA1 THR A 27 GLU A 44 1 18 HELIX 2 AA2 PHE A 77 THR A 84 1 8 HELIX 3 AA3 HIS A 96 LEU A 100 5 5 HELIX 4 AA4 ALA A 114 VAL A 118 5 5 HELIX 5 AA5 PHE A 124 ALA A 129 5 6 HELIX 6 AA6 SER A 134 GLU A 138 5 5 HELIX 7 AA7 GLY A 155 GLN A 174 1 20 HELIX 8 AA8 GLU A 194 ARG A 211 1 18 HELIX 9 AA9 THR A 253 SER A 268 1 16 HELIX 10 AB1 VAL A 276 LEU A 283 1 8 HELIX 11 AB2 THR A 296 LYS A 311 1 16 HELIX 12 AB3 ASN A 363 GLY A 384 1 22 HELIX 13 AB4 GLN A 394 TYR A 405 1 12 HELIX 14 AB5 THR A 473 SER A 489 1 17 HELIX 15 AB6 SER A 499 ALA A 508 1 10 HELIX 16 AB7 SER A 515 LYS A 528 1 14 HELIX 17 AB8 THR B 27 GLU B 44 1 18 HELIX 18 AB9 PHE B 77 THR B 84 1 8 HELIX 19 AC1 THR B 84 VAL B 90 1 7 HELIX 20 AC2 GLY B 99 LYS B 103 5 5 HELIX 21 AC3 GLY B 112 VAL B 118 5 7 HELIX 22 AC4 PHE B 124 ALA B 129 5 6 HELIX 23 AC5 SER B 134 GLU B 138 5 5 HELIX 24 AC6 LYS B 154 ASN B 175 1 22 HELIX 25 AC7 GLU B 194 ARG B 211 1 18 HELIX 26 AC8 HIS B 235 TRP B 239 5 5 HELIX 27 AC9 THR B 253 GLN B 269 1 17 HELIX 28 AD1 VAL B 276 LEU B 282 1 7 HELIX 29 AD2 THR B 296 LYS B 311 1 16 HELIX 30 AD3 ASN B 363 GLY B 384 1 22 HELIX 31 AD4 GLN B 394 TRP B 402 1 9 HELIX 32 AD5 THR B 403 TYR B 405 5 3 HELIX 33 AD6 LEU B 422 GLN B 428 1 7 SHEET 1 AA1 3 ILE A 47 LYS A 49 0 SHEET 2 AA1 3 ILE A 142 TYR A 146 -1 O GLN A 145 N SER A 48 SHEET 3 AA1 3 PHE A 130 ILE A 132 -1 N ILE A 132 O ILE A 142 SHEET 1 AA2 2 VAL A 60 ILE A 63 0 SHEET 2 AA2 2 ARG A 72 VAL A 75 -1 O LEU A 74 N PHE A 61 SHEET 1 AA3 3 SER A 105 ASP A 110 0 SHEET 2 AA3 3 ASP A 186 SER A 191 -1 O VAL A 189 N THR A 107 SHEET 3 AA3 3 VAL A 179 TYR A 183 -1 N VAL A 179 O GLY A 190 SHEET 1 AA4 3 PHE A 227 TRP A 229 0 SHEET 2 AA4 3 TYR A 232 LEU A 234 -1 O LEU A 234 N PHE A 227 SHEET 3 AA4 3 TRP A 239 VAL A 241 -1 O THR A 240 N GLU A 233 SHEET 1 AA5 5 LYS A 347 ALA A 355 0 SHEET 2 AA5 5 GLN A 336 GLU A 344 -1 N ILE A 341 O LYS A 350 SHEET 3 AA5 5 ILE A 326 GLY A 333 -1 N ILE A 326 O TYR A 342 SHEET 4 AA5 5 LYS A 388 LEU A 391 1 O LYS A 388 N ALA A 327 SHEET 5 AA5 5 TRP A 414 PHE A 416 1 O GLU A 415 N LEU A 391 SHEET 1 AA6 5 GLN A 464 LEU A 469 0 SHEET 2 AA6 5 GLY A 453 THR A 459 -1 N GLY A 453 O LEU A 469 SHEET 3 AA6 5 GLU A 438 ALA A 446 -1 N TYR A 441 O VAL A 458 SHEET 4 AA6 5 GLU A 492 THR A 497 1 O VAL A 496 N PHE A 440 SHEET 5 AA6 5 LYS A 530 TRP A 535 1 O ALA A 534 N ILE A 495 SHEET 1 AA7 3 ILE B 47 LYS B 49 0 SHEET 2 AA7 3 ILE B 142 TYR B 146 -1 O GLN B 145 N SER B 48 SHEET 3 AA7 3 PHE B 130 ILE B 132 -1 N ILE B 132 O ILE B 142 SHEET 1 AA8 2 VAL B 60 LYS B 64 0 SHEET 2 AA8 2 TRP B 71 VAL B 75 -1 O LEU B 74 N PHE B 61 SHEET 1 AA9 3 SER B 105 ASP B 110 0 SHEET 2 AA9 3 ASP B 186 SER B 191 -1 O VAL B 189 N THR B 107 SHEET 3 AA9 3 VAL B 179 TYR B 183 -1 N TYR B 181 O TYR B 188 SHEET 1 AB1 5 ASN B 348 ALA B 355 0 SHEET 2 AB1 5 GLN B 336 TYR B 342 -1 N TRP B 337 O TYR B 354 SHEET 3 AB1 5 ILE B 326 GLY B 333 -1 N ILE B 326 O TYR B 342 SHEET 4 AB1 5 LYS B 388 LEU B 391 1 O LYS B 388 N ALA B 327 SHEET 5 AB1 5 TRP B 414 PHE B 416 1 O GLU B 415 N LEU B 391 CISPEP 1 PRO A 225 PRO A 226 0 2.84 CISPEP 2 PRO A 345 PHE A 346 0 -1.26 CISPEP 3 PRO A 420 PRO A 421 0 0.89 CRYST1 117.728 154.253 155.441 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008494 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006483 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006433 0.00000