HEADER HYDROLASE 25-OCT-21 7SLV TITLE VANIN-1 COMPLEXED WITH COMPOUND 3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PANTETHEINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PANTETHEINE HYDROLASE,TIFF66,VASCULAR NON-INFLAMMATORY COMPND 5 MOLECULE 1,VANIN-1; COMPND 6 EC: 3.5.1.92; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: VNN1; SOURCE 6 EXPRESSION_SYSTEM: CHINESE HAMSTER; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10029 KEYWDS PANTETHEINE, SBDD, PYRIMDINE CARBOXAMIDE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR F.F.VAJDOS REVDAT 2 26-JAN-22 7SLV 1 JRNL REVDAT 1 12-JAN-22 7SLV 0 JRNL AUTH A.CASIMIRO-GARCIA,C.ALLAIS,A.BRENNAN,C.CHOI,G.DOWER, JRNL AUTH 2 K.A.FARLEY,M.FLEMING,A.FLICK,R.K.FRISBIE,J.HALL,D.HEPWORTH, JRNL AUTH 3 H.JONES,J.D.KNAFELS,S.KORTUM,F.E.LOVERING,J.P.MATHIAS, JRNL AUTH 4 S.MOHAN,P.M.MORGAN,C.PARNG,K.PARRIS,N.PULLEN,F.SCHLERMAN, JRNL AUTH 5 J.STANSFIELD,J.W.STROHBACH,F.F.VAJDOS,F.VINCENT,H.WANG, JRNL AUTH 6 X.WANG,R.WEBSTER,S.W.WRIGHT JRNL TITL DISCOVERY OF A SERIES OF PYRIMIDINE CARBOXAMIDES AS JRNL TITL 2 INHIBITORS OF VANIN-1. JRNL REF J.MED.CHEM. V. 65 757 2022 JRNL REFN ISSN 0022-2623 JRNL PMID 34967602 JRNL DOI 10.1021/ACS.JMEDCHEM.1C01849 REMARK 2 REMARK 2 RESOLUTION. 2.13 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.6 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.13 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 30179 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1523 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 15 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.13 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.21 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2905 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2318 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2758 REMARK 3 BIN R VALUE (WORKING SET) : 0.2284 REMARK 3 BIN FREE R VALUE : 0.2983 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.06 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 147 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3619 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 188 REMARK 3 SOLVENT ATOMS : 212 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.87 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.46890 REMARK 3 B22 (A**2) : -15.32850 REMARK 3 B33 (A**2) : 10.85960 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.259 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.213 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.174 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.206 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.173 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3945 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5421 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1339 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 95 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 579 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3945 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 553 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4469 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.24 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.04 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.54 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7SLV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-OCT-21. REMARK 100 THE DEPOSITION ID IS D_1000260715. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 173 REMARK 200 PH : 6.1-6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.5 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30212 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.130 REMARK 200 RESOLUTION RANGE LOW (A) : 55.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.13 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.54900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES PH 6.1-6.7, 22-33% PEG-MME REMARK 280 -2000, 10 MM TCEP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 32.32800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.75550 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 73.72000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 32.32800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.75550 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 73.72000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 32.32800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 55.75550 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 73.72000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 32.32800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 55.75550 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 73.72000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 GLY A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 ASP A -7 REMARK 465 TYR A -6 REMARK 465 LYS A -5 REMARK 465 ASP A -4 REMARK 465 ASP A -3 REMARK 465 ASP A -2 REMARK 465 ASP A -1 REMARK 465 LYS A 0 REMARK 465 GLN A 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 162 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 18 136.02 60.11 REMARK 500 THR A 19 -91.45 -145.87 REMARK 500 LEU A 20 -63.10 57.41 REMARK 500 ASN A 84 76.58 56.57 REMARK 500 ASN A 90 70.36 -153.21 REMARK 500 ILE A 118 -167.66 -126.03 REMARK 500 GLU A 164 47.53 -100.36 REMARK 500 CYS A 190 -110.09 35.77 REMARK 500 THR A 254 134.68 -179.22 REMARK 500 SER A 263 168.08 179.65 REMARK 500 SER A 281 145.28 -171.24 REMARK 500 SER A 297 -76.76 -44.28 REMARK 500 LYS A 338 -118.31 54.13 REMARK 500 THR A 384 -155.74 -123.05 REMARK 500 ALA A 427 71.29 -116.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 806 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH A 811 DISTANCE = 8.45 ANGSTROMS REMARK 525 HOH A 812 DISTANCE = 9.94 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 504 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 66 O REMARK 620 2 GLY A 163 O 170.7 REMARK 620 3 ASN A 165 OD1 98.2 90.8 REMARK 620 4 GLN A 166 OE1 97.7 83.8 95.2 REMARK 620 5 HOH A 717 O 99.6 71.1 152.8 102.5 REMARK 620 N 1 2 3 4 DBREF 7SLV A 1 462 UNP O95497 VNN1_HUMAN 22 483 SEQADV 7SLV GLY A -19 UNP O95497 EXPRESSION TAG SEQADV 7SLV SER A -18 UNP O95497 EXPRESSION TAG SEQADV 7SLV GLY A -17 UNP O95497 EXPRESSION TAG SEQADV 7SLV HIS A -16 UNP O95497 EXPRESSION TAG SEQADV 7SLV HIS A -15 UNP O95497 EXPRESSION TAG SEQADV 7SLV HIS A -14 UNP O95497 EXPRESSION TAG SEQADV 7SLV HIS A -13 UNP O95497 EXPRESSION TAG SEQADV 7SLV HIS A -12 UNP O95497 EXPRESSION TAG SEQADV 7SLV HIS A -11 UNP O95497 EXPRESSION TAG SEQADV 7SLV GLY A -10 UNP O95497 EXPRESSION TAG SEQADV 7SLV SER A -9 UNP O95497 EXPRESSION TAG SEQADV 7SLV GLY A -8 UNP O95497 EXPRESSION TAG SEQADV 7SLV ASP A -7 UNP O95497 EXPRESSION TAG SEQADV 7SLV TYR A -6 UNP O95497 EXPRESSION TAG SEQADV 7SLV LYS A -5 UNP O95497 EXPRESSION TAG SEQADV 7SLV ASP A -4 UNP O95497 EXPRESSION TAG SEQADV 7SLV ASP A -3 UNP O95497 EXPRESSION TAG SEQADV 7SLV ASP A -2 UNP O95497 EXPRESSION TAG SEQADV 7SLV ASP A -1 UNP O95497 EXPRESSION TAG SEQADV 7SLV LYS A 0 UNP O95497 EXPRESSION TAG SEQRES 1 A 482 GLY SER GLY HIS HIS HIS HIS HIS HIS GLY SER GLY ASP SEQRES 2 A 482 TYR LYS ASP ASP ASP ASP LYS GLN ASP THR PHE THR ALA SEQRES 3 A 482 ALA VAL TYR GLU HIS ALA ALA ILE LEU PRO ASN ALA THR SEQRES 4 A 482 LEU THR PRO VAL SER ARG GLU GLU ALA LEU ALA LEU MET SEQRES 5 A 482 ASN ARG ASN LEU ASP ILE LEU GLU GLY ALA ILE THR SER SEQRES 6 A 482 ALA ALA ASP GLN GLY ALA HIS ILE ILE VAL THR PRO GLU SEQRES 7 A 482 ASP ALA ILE TYR GLY TRP ASN PHE ASN ARG ASP SER LEU SEQRES 8 A 482 TYR PRO TYR LEU GLU ASP ILE PRO ASP PRO GLU VAL ASN SEQRES 9 A 482 TRP ILE PRO CYS ASN ASN ARG ASN ARG PHE GLY GLN THR SEQRES 10 A 482 PRO VAL GLN GLU ARG LEU SER CYS LEU ALA LYS ASN ASN SEQRES 11 A 482 SER ILE TYR VAL VAL ALA ASN ILE GLY ASP LYS LYS PRO SEQRES 12 A 482 CYS ASP THR SER ASP PRO GLN CYS PRO PRO ASP GLY ARG SEQRES 13 A 482 TYR GLN TYR ASN THR ASP VAL VAL PHE ASP SER GLN GLY SEQRES 14 A 482 LYS LEU VAL ALA ARG TYR HIS LYS GLN ASN LEU PHE MET SEQRES 15 A 482 GLY GLU ASN GLN PHE ASN VAL PRO LYS GLU PRO GLU ILE SEQRES 16 A 482 VAL THR PHE ASN THR THR PHE GLY SER PHE GLY ILE PHE SEQRES 17 A 482 THR CYS PHE ASP ILE LEU PHE HIS ASP PRO ALA VAL THR SEQRES 18 A 482 LEU VAL LYS ASP PHE HIS VAL ASP THR ILE VAL PHE PRO SEQRES 19 A 482 THR ALA TRP MET ASN VAL LEU PRO HIS LEU SER ALA VAL SEQRES 20 A 482 GLU PHE HIS SER ALA TRP ALA MET GLY MET ARG VAL ASN SEQRES 21 A 482 PHE LEU ALA SER ASN ILE HIS TYR PRO SER LYS LYS MET SEQRES 22 A 482 THR GLY SER GLY ILE TYR ALA PRO ASN SER SER ARG ALA SEQRES 23 A 482 PHE HIS TYR ASP MET LYS THR GLU GLU GLY LYS LEU LEU SEQRES 24 A 482 LEU SER GLN LEU ASP SER HIS PRO SER HIS SER ALA VAL SEQRES 25 A 482 VAL ASN TRP THR SER TYR ALA SER SER ILE GLU ALA LEU SEQRES 26 A 482 SER SER GLY ASN LYS GLU PHE LYS GLY THR VAL PHE PHE SEQRES 27 A 482 ASP GLU PHE THR PHE VAL LYS LEU THR GLY VAL ALA GLY SEQRES 28 A 482 ASN TYR THR VAL CYS GLN LYS ASP LEU CYS CYS HIS LEU SEQRES 29 A 482 SER TYR LYS MET SER GLU ASN ILE PRO ASN GLU VAL TYR SEQRES 30 A 482 ALA LEU GLY ALA PHE ASP GLY LEU HIS THR VAL GLU GLY SEQRES 31 A 482 ARG TYR TYR LEU GLN ILE CYS THR LEU LEU LYS CYS LYS SEQRES 32 A 482 THR THR ASN LEU ASN THR CYS GLY ASP SER ALA GLU THR SEQRES 33 A 482 ALA SER THR ARG PHE GLU MET PHE SER LEU SER GLY THR SEQRES 34 A 482 PHE GLY THR GLN TYR VAL PHE PRO GLU VAL LEU LEU SER SEQRES 35 A 482 GLU ASN GLN LEU ALA PRO GLY GLU PHE GLN VAL SER THR SEQRES 36 A 482 ASP GLY ARG LEU PHE SER LEU LYS PRO THR SER GLY PRO SEQRES 37 A 482 VAL LEU THR VAL THR LEU PHE GLY ARG LEU TYR GLU LYS SEQRES 38 A 482 ASP HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET BMA B 4 11 HET BMA B 5 11 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET BMA D 4 11 HET BMA D 5 11 HET BMA D 6 11 HET NAG A 501 14 HET 9TC A 502 48 HET NAG A 503 14 HET NA A 504 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM 9TC (8-OXA-2-AZASPIRO[4.5]DECAN-2-YL)(2-{[(PYRAZIN-2-YL) HETNAM 2 9TC METHYL]AMINO}PYRIMIDIN-5-YL)METHANONE HETNAM NA SODIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 2 NAG 6(C8 H15 N O6) FORMUL 2 BMA 7(C6 H12 O6) FORMUL 5 9TC C18 H22 N6 O2 FORMUL 7 NA NA 1+ FORMUL 8 HOH *212(H2 O) HELIX 1 AA1 SER A 24 GLN A 49 1 26 HELIX 2 AA2 ASN A 67 TYR A 72 1 6 HELIX 3 AA3 PRO A 73 LEU A 75 5 3 HELIX 4 AA4 ASP A 80 ASN A 84 5 5 HELIX 5 AA5 THR A 97 ASN A 110 1 14 HELIX 6 AA6 THR A 189 PHE A 195 5 7 HELIX 7 AA7 PRO A 198 ASP A 205 1 8 HELIX 8 AA8 SER A 225 ARG A 238 1 14 HELIX 9 AA9 TYR A 248 LYS A 252 5 5 HELIX 10 AB1 THR A 296 ILE A 302 1 7 HELIX 11 AB2 ASN A 386 CYS A 390 5 5 HELIX 12 AB3 TYR A 459 ASP A 462 5 4 SHEET 1 AA1 6 LEU A 151 HIS A 156 0 SHEET 2 AA1 6 ARG A 136 PHE A 145 -1 N ASP A 142 O TYR A 155 SHEET 3 AA1 6 TYR A 113 PRO A 123 -1 N ILE A 118 O THR A 141 SHEET 4 AA1 6 ILE A 53 VAL A 55 1 N ILE A 54 O VAL A 115 SHEET 5 AA1 6 THR A 3 GLU A 10 1 N TYR A 9 O VAL A 55 SHEET 6 AA1 6 LYS A 277 ASP A 284 -1 O LEU A 279 N VAL A 8 SHEET 1 AA2 6 THR A 177 THR A 180 0 SHEET 2 AA2 6 GLY A 183 ILE A 187 -1 O PHE A 185 N PHE A 178 SHEET 3 AA2 6 THR A 210 THR A 215 1 O THR A 210 N GLY A 186 SHEET 4 AA2 6 ASN A 240 ASN A 245 1 O LEU A 242 N ILE A 211 SHEET 5 AA2 6 SER A 256 TYR A 259 -1 O TYR A 259 N PHE A 241 SHEET 6 AA2 6 SER A 264 HIS A 268 -1 O ARG A 265 N ILE A 258 SHEET 1 AA3 7 GLU A 311 VAL A 316 0 SHEET 2 AA3 7 ASP A 319 LYS A 325 -1 O PHE A 323 N PHE A 312 SHEET 3 AA3 7 TYR A 357 HIS A 366 -1 O LEU A 359 N VAL A 324 SHEET 4 AA3 7 TYR A 372 LYS A 381 -1 O THR A 378 N GLY A 360 SHEET 5 AA3 7 VAL A 449 ARG A 457 -1 O VAL A 452 N LEU A 379 SHEET 6 AA3 7 VAL A 415 LEU A 421 -1 N PHE A 416 O PHE A 455 SHEET 7 AA3 7 GLN A 425 LEU A 426 -1 O GLN A 425 N LEU A 421 SHEET 1 AA4 5 ALA A 330 GLN A 337 0 SHEET 2 AA4 5 LEU A 340 MET A 348 -1 O CYS A 342 N VAL A 335 SHEET 3 AA4 5 PHE A 401 GLY A 408 -1 O GLU A 402 N LYS A 347 SHEET 4 AA4 5 LEU A 439 SER A 441 -1 O LEU A 439 N LEU A 406 SHEET 5 AA4 5 PHE A 431 VAL A 433 -1 N GLN A 432 O PHE A 440 SSBOND 1 CYS A 88 CYS A 105 1555 1555 2.05 SSBOND 2 CYS A 124 CYS A 131 1555 1555 2.04 SSBOND 3 CYS A 336 CYS A 341 1555 1555 2.06 SSBOND 4 CYS A 342 CYS A 377 1555 1555 2.05 SSBOND 5 CYS A 382 CYS A 390 1555 1555 2.03 LINK ND2 ASN A 109 C1 NAG A 501 1555 1555 1.43 LINK ND2 ASN A 179 C1 NAG D 1 1555 1555 1.43 LINK ND2 ASN A 294 C1 NAG B 1 1555 1555 1.43 LINK ND2 ASN A 332 C1 NAG A 503 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.40 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.40 LINK O3 BMA B 3 C1 BMA B 4 1555 1555 1.43 LINK O6 BMA B 3 C1 BMA B 5 1555 1555 1.41 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.38 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.39 LINK O6 BMA D 3 C1 BMA D 4 1555 1555 1.37 LINK O3 BMA D 3 C1 BMA D 6 1555 1555 1.33 LINK O3 BMA D 4 C1 BMA D 5 1555 1555 1.39 LINK O PHE A 66 NA NA A 504 1555 1555 2.24 LINK O GLY A 163 NA NA A 504 1555 1555 2.81 LINK OD1 ASN A 165 NA NA A 504 1555 1555 2.48 LINK OE1 GLN A 166 NA NA A 504 1555 1555 2.67 LINK NA NA A 504 O HOH A 717 1555 1555 2.24 CISPEP 1 ALA A 18 THR A 19 0 -3.42 CISPEP 2 ASP A 197 PRO A 198 0 6.08 CISPEP 3 LEU A 221 PRO A 222 0 8.24 CISPEP 4 SER A 422 GLU A 423 0 -5.28 CISPEP 5 PRO A 428 GLY A 429 0 -23.38 CRYST1 64.656 111.511 147.440 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015466 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008968 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006782 0.00000