HEADER CELL CYCLE 25-OCT-21 7SMF TITLE P107 POCKET DOMAIN COMPLEXED WITH MUTATED HDAC1-3X PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETINOBLASTOMA-LIKE PROTEIN 1; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: UNP RESIDUES 391-601,780-887,924-972; COMPND 5 SYNONYM: 107 KDA RETINOBLASTOMA-ASSOCIATED PROTEIN,P107,PRB1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: HISTONE DEACETYLASE 1; COMPND 9 CHAIN: B, D; COMPND 10 FRAGMENT: UNP RESIDUES 413-422; COMPND 11 EC: 3.5.1.98,3.5.1.-; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RBL1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS TRANSCRIPTION, CYCLIN BOX POCKET TRANSCRIPTIONAL REGULATOR, CELL KEYWDS 2 CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR S.PUTTA,S.M.FERNANDEZ,S.M.TRIPATHI,G.A.MULLER,S.M.RUBIN REVDAT 3 18-OCT-23 7SMF 1 REMARK REVDAT 2 14-SEP-22 7SMF 1 JRNL REVDAT 1 29-JUN-22 7SMF 0 JRNL AUTH S.PUTTA,L.ALVAREZ,S.LUDTKE,P.SEHR,G.A.MULLER,S.M.FERNANDEZ, JRNL AUTH 2 S.TRIPATHI,J.LEWIS,T.J.GIBSON,L.B.CHEMES,S.M.RUBIN JRNL TITL STRUCTURAL BASIS FOR TUNABLE AFFINITY AND SPECIFICITY OF JRNL TITL 2 LXCXE-DEPENDENT PROTEIN INTERACTIONS WITH THE RETINOBLASTOMA JRNL TITL 3 PROTEIN FAMILY. JRNL REF STRUCTURE V. 30 1340 2022 JRNL REFN ISSN 0969-2126 JRNL PMID 35716663 JRNL DOI 10.1016/J.STR.2022.05.019 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.17.1_3660: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 3 NUMBER OF REFLECTIONS : 21575 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.301 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.850 REMARK 3 FREE R VALUE TEST SET COUNT : 1047 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.2900 - 5.7300 0.94 2953 158 0.2352 0.2918 REMARK 3 2 5.7300 - 4.5500 0.95 2998 143 0.2149 0.2668 REMARK 3 3 4.5500 - 3.9800 0.95 2971 134 0.2092 0.2649 REMARK 3 4 3.9800 - 3.6200 0.94 2954 158 0.2198 0.2870 REMARK 3 5 3.6100 - 3.3600 0.92 2851 172 0.2448 0.3261 REMARK 3 6 3.3600 - 3.1600 0.92 2880 152 0.2799 0.3561 REMARK 3 7 3.1600 - 3.0000 0.92 2921 130 0.2796 0.3473 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.490 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.800 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 5868 REMARK 3 ANGLE : 2.076 7944 REMARK 3 CHIRALITY : 0.118 896 REMARK 3 PLANARITY : 0.008 1000 REMARK 3 DIHEDRAL : 12.831 765 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 389 THROUGH 512 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.7896 2.3450 -16.7353 REMARK 3 T TENSOR REMARK 3 T11: 0.1217 T22: 0.2040 REMARK 3 T33: 0.2331 T12: -0.0187 REMARK 3 T13: -0.0155 T23: 0.0121 REMARK 3 L TENSOR REMARK 3 L11: 0.7799 L22: 0.9110 REMARK 3 L33: 0.5526 L12: 0.3235 REMARK 3 L13: 0.2041 L23: 0.1878 REMARK 3 S TENSOR REMARK 3 S11: -0.0269 S12: 0.1164 S13: -0.0987 REMARK 3 S21: -0.2445 S22: -0.0926 S23: 0.2628 REMARK 3 S31: -0.0398 S32: -0.0793 S33: -0.0235 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 513 THROUGH 854 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.2248 1.3275 4.9903 REMARK 3 T TENSOR REMARK 3 T11: 0.1757 T22: 0.2202 REMARK 3 T33: 0.2299 T12: 0.0005 REMARK 3 T13: 0.0230 T23: 0.0386 REMARK 3 L TENSOR REMARK 3 L11: 1.7321 L22: 1.0645 REMARK 3 L33: 0.3569 L12: 0.4762 REMARK 3 L13: -0.1896 L23: 0.1428 REMARK 3 S TENSOR REMARK 3 S11: 0.1251 S12: -0.5626 S13: 0.0040 REMARK 3 S21: 0.2706 S22: -0.1755 S23: -0.0872 REMARK 3 S31: -0.0497 S32: 0.1401 S33: -0.1007 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 855 THROUGH 965 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.9706 -6.1320 13.9709 REMARK 3 T TENSOR REMARK 3 T11: 0.4021 T22: 0.4707 REMARK 3 T33: 0.4912 T12: -0.0610 REMARK 3 T13: -0.1909 T23: 0.1408 REMARK 3 L TENSOR REMARK 3 L11: 1.4517 L22: 0.5231 REMARK 3 L33: 1.1422 L12: -0.0313 REMARK 3 L13: 0.5296 L23: 0.1695 REMARK 3 S TENSOR REMARK 3 S11: 0.1310 S12: -0.5158 S13: -0.4233 REMARK 3 S21: 0.3124 S22: -0.0839 S23: -0.2678 REMARK 3 S31: 0.4017 S32: 0.0212 S33: -0.2622 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 413 THROUGH 422 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.0224 -13.4146 17.2036 REMARK 3 T TENSOR REMARK 3 T11: 0.5730 T22: 0.6418 REMARK 3 T33: 0.6650 T12: -0.0642 REMARK 3 T13: -0.2104 T23: 0.3774 REMARK 3 L TENSOR REMARK 3 L11: 0.9192 L22: 0.3046 REMARK 3 L33: 2.2792 L12: -0.3384 REMARK 3 L13: 0.9974 L23: -0.3003 REMARK 3 S TENSOR REMARK 3 S11: 0.0213 S12: -0.0499 S13: -0.0887 REMARK 3 S21: -0.0273 S22: 0.0246 S23: 0.0237 REMARK 3 S31: 0.1405 S32: -0.0492 S33: -0.3396 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 389 THROUGH 512 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.5821 26.7821 -7.0383 REMARK 3 T TENSOR REMARK 3 T11: 0.1915 T22: 0.1347 REMARK 3 T33: 0.2457 T12: -0.0123 REMARK 3 T13: 0.0002 T23: 0.0223 REMARK 3 L TENSOR REMARK 3 L11: 1.4870 L22: 1.0924 REMARK 3 L33: 0.7856 L12: 0.0547 REMARK 3 L13: 0.1238 L23: 0.1553 REMARK 3 S TENSOR REMARK 3 S11: -0.0802 S12: -0.2580 S13: 0.2793 REMARK 3 S21: -0.0651 S22: 0.0503 S23: -0.1232 REMARK 3 S31: 0.0450 S32: -0.0565 S33: 0.0224 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 513 THROUGH 965 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.8468 8.0160 -31.4299 REMARK 3 T TENSOR REMARK 3 T11: 0.2645 T22: 0.2606 REMARK 3 T33: 0.2363 T12: 0.0007 REMARK 3 T13: 0.0427 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 1.3208 L22: 1.1743 REMARK 3 L33: 0.7441 L12: 0.0949 REMARK 3 L13: 0.0316 L23: 0.3066 REMARK 3 S TENSOR REMARK 3 S11: -0.0836 S12: 0.4235 S13: -0.0599 REMARK 3 S21: -0.4195 S22: 0.0543 S23: -0.0785 REMARK 3 S31: 0.0851 S32: 0.1470 S33: -0.0131 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 413 THROUGH 422 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.7073 -9.8565 -40.4578 REMARK 3 T TENSOR REMARK 3 T11: 0.5457 T22: 0.7141 REMARK 3 T33: 0.4148 T12: 0.0002 REMARK 3 T13: 0.1671 T23: -0.1879 REMARK 3 L TENSOR REMARK 3 L11: 1.1042 L22: 1.2491 REMARK 3 L33: 0.6945 L12: -1.0495 REMARK 3 L13: 0.4433 L23: -0.7751 REMARK 3 S TENSOR REMARK 3 S11: -0.0744 S12: 0.1314 S13: 0.0221 REMARK 3 S21: -0.1012 S22: -0.0728 S23: -0.2074 REMARK 3 S31: -0.2290 S32: 0.1608 S33: 0.0661 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7SMF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-OCT-21. REMARK 100 THE DEPOSITION ID IS D_1000260676. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUL-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21589 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 39.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.25100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.18 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.74000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4YOS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES, PH 6.5, 4% PEG400, 1.6 M REMARK 280 AMMONIUM SULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 388 REMARK 465 PRO A 772 REMARK 465 ASN A 773 REMARK 465 ASN A 774 REMARK 465 PHE A 775 REMARK 465 GLU A 776 REMARK 465 THR A 777 REMARK 465 GLY A 778 REMARK 465 ASN A 779 REMARK 465 ASN A 780 REMARK 465 ARG A 781 REMARK 465 PRO A 782 REMARK 465 LYS A 783 REMARK 465 ILE A 923 REMARK 465 LYS A 924 REMARK 465 LEU A 950A REMARK 465 ALA A 950B REMARK 465 ASN A 950C REMARK 465 GLN A 950D REMARK 465 ASP A 950E REMARK 465 HIS A 950F REMARK 465 MET A 950G REMARK 465 MET A 950H REMARK 465 ASP A 950I REMARK 465 ALA A 950J REMARK 465 ILE A 966 REMARK 465 LYS A 967 REMARK 465 GLN A 968 REMARK 465 GLN A 969 REMARK 465 GLY C 388 REMARK 465 PRO C 772 REMARK 465 ASN C 773 REMARK 465 ASN C 774 REMARK 465 PHE C 775 REMARK 465 GLU C 776 REMARK 465 THR C 777 REMARK 465 GLY C 778 REMARK 465 ASN C 779 REMARK 465 ASN C 780 REMARK 465 ARG C 781 REMARK 465 PRO C 782 REMARK 465 LYS C 783 REMARK 465 ILE C 923 REMARK 465 LYS C 924 REMARK 465 LEU C 950A REMARK 465 ALA C 950B REMARK 465 ASN C 950C REMARK 465 GLN C 950D REMARK 465 ASP C 950E REMARK 465 HIS C 950F REMARK 465 MET C 950G REMARK 465 MET C 950H REMARK 465 ASP C 950I REMARK 465 ALA C 950J REMARK 465 ILE C 966 REMARK 465 LYS C 967 REMARK 465 GLN C 968 REMARK 465 GLN C 969 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 405 CG CD CE NZ REMARK 470 ARG A 549 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 809 CG CD CE NZ REMARK 470 LYS A 819 CG CD CE NZ REMARK 470 LYS A 856 CG CD CE NZ REMARK 470 LYS A 885 CG CD CE NZ REMARK 470 SER A 886 OG REMARK 470 LYS C 405 CG CD CE NZ REMARK 470 ARG C 549 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 784 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 809 CG CD CE NZ REMARK 470 LYS C 819 CG CD CE NZ REMARK 470 LYS C 856 CG CD CE NZ REMARK 470 LYS C 885 CG CD CE NZ REMARK 470 SER C 886 OG REMARK 470 GLU D 419 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 448 -31.95 -169.86 REMARK 500 PRO A 520 53.57 -101.28 REMARK 500 GLU A 544 92.56 -167.51 REMARK 500 SER A 565 -156.86 -154.45 REMARK 500 LEU A 566 -51.78 69.23 REMARK 500 CYS A 831 45.56 -159.51 REMARK 500 LYS A 856 57.43 -94.65 REMARK 500 TYR A 949 66.64 -117.79 REMARK 500 SER B 421 -78.92 -126.03 REMARK 500 VAL C 401 43.04 -91.02 REMARK 500 ASN C 406 31.71 -79.91 REMARK 500 ARG C 421 76.95 -102.97 REMARK 500 SER C 514 76.63 43.88 REMARK 500 ARG C 517 93.24 -63.39 REMARK 500 PRO C 520 49.20 -88.97 REMARK 500 GLU C 544 103.21 -164.76 REMARK 500 SER C 565 -158.78 -165.49 REMARK 500 LEU C 566 -49.72 69.74 REMARK 500 LEU C 810 -159.65 -84.36 REMARK 500 ASN C 814 3.98 -69.65 REMARK 500 ASP C 837 10.81 87.82 REMARK 500 ARG C 838 -169.92 -128.27 REMARK 500 GLU C 857 86.18 -157.80 REMARK 500 SER C 881 66.58 -172.10 REMARK 500 LEU C 884 -54.93 -129.37 REMARK 500 PHE C 945 -17.71 -178.34 REMARK 500 GLU D 419 -163.87 -119.50 REMARK 500 SER D 421 -164.06 -104.16 REMARK 500 REMARK 500 REMARK: NULL DBREF 7SMF A 391 779 UNP P28749 RBL1_HUMAN 391 601 DBREF 7SMF A 780 923 UNP P28749 RBL1_HUMAN 780 887 DBREF 7SMF A 924 969 UNP P28749 RBL1_HUMAN 924 972 DBREF 7SMF B 413 422 PDB 7SMF 7SMF 413 422 DBREF 7SMF C 391 779 UNP P28749 RBL1_HUMAN 391 601 DBREF 7SMF C 780 923 UNP P28749 RBL1_HUMAN 780 887 DBREF 7SMF C 924 969 UNP P28749 RBL1_HUMAN 924 972 DBREF 7SMF D 413 422 PDB 7SMF 7SMF 413 422 SEQADV 7SMF GLY A 388 UNP P28749 EXPRESSION TAG SEQADV 7SMF GLU A 389 UNP P28749 EXPRESSION TAG SEQADV 7SMF PHE A 390 UNP P28749 EXPRESSION TAG SEQADV 7SMF GLY C 388 UNP P28749 EXPRESSION TAG SEQADV 7SMF GLU C 389 UNP P28749 EXPRESSION TAG SEQADV 7SMF PHE C 390 UNP P28749 EXPRESSION TAG SEQRES 1 A 371 GLY GLU PHE THR GLN SER VAL SER ARG LEU GLN SER ILE SEQRES 2 A 371 VAL ALA GLY LEU LYS ASN ALA PRO SER ASP GLN LEU ILE SEQRES 3 A 371 ASN ILE PHE GLU SER CYS VAL ARG ASN PRO VAL GLU ASN SEQRES 4 A 371 ILE MET LYS ILE LEU LYS GLY ILE GLY GLU THR PHE CYS SEQRES 5 A 371 GLN HIS TYR THR GLN SER THR ASP GLU GLN PRO GLY SER SEQRES 6 A 371 HIS ILE ASP PHE ALA VAL ASN ARG LEU LYS LEU ALA GLU SEQRES 7 A 371 ILE LEU TYR TYR LYS ILE LEU GLU THR VAL MET VAL GLN SEQRES 8 A 371 GLU THR ARG ARG LEU HIS GLY MET ASP MET SER VAL LEU SEQRES 9 A 371 LEU GLU GLN ASP ILE PHE HIS ARG SER LEU MET ALA CYS SEQRES 10 A 371 CYS LEU GLU ILE VAL LEU PHE ALA TYR SER SER PRO ARG SEQRES 11 A 371 THR PHE PRO TRP ILE ILE GLU VAL LEU ASN LEU GLN PRO SEQRES 12 A 371 PHE TYR PHE TYR LYS VAL ILE GLU VAL VAL ILE ARG SER SEQRES 13 A 371 GLU GLU GLY LEU SER ARG ASP MET VAL LYS HIS LEU ASN SEQRES 14 A 371 SER ILE GLU GLU GLN ILE LEU GLU SER LEU ALA TRP SER SEQRES 15 A 371 HIS ASP SER ALA LEU TRP GLU ALA LEU GLN VAL SER ALA SEQRES 16 A 371 ASN LYS VAL PRO THR CYS GLU GLU VAL ILE PHE PRO ASN SEQRES 17 A 371 ASN PHE GLU THR GLY ASN ASN ARG PRO LYS ARG THR GLY SEQRES 18 A 371 SER LEU ALA LEU PHE TYR ARG LYS VAL TYR HIS LEU ALA SEQRES 19 A 371 SER VAL ARG LEU ARG ASP LEU CYS LEU LYS LEU ASP VAL SEQRES 20 A 371 SER ASN GLU LEU ARG ARG LYS ILE TRP THR CYS PHE GLU SEQRES 21 A 371 PHE THR LEU VAL HIS CYS PRO ASP LEU MET LYS ASP ARG SEQRES 22 A 371 HIS LEU ASP GLN LEU LEU LEU CYS ALA PHE TYR ILE MET SEQRES 23 A 371 ALA LYS VAL THR LYS GLU GLU ARG THR PHE GLN GLU ILE SEQRES 24 A 371 MET LYS SER TYR ARG ASN GLN PRO GLN ALA ASN SER HIS SEQRES 25 A 371 VAL TYR ARG SER VAL LEU LEU LYS SER ILE LYS GLU GLU SEQRES 26 A 371 ARG GLY ASP LEU ILE LYS PHE TYR ASN THR ILE TYR VAL SEQRES 27 A 371 GLY ARG VAL LYS SER PHE ALA LEU LYS TYR ASP LEU ALA SEQRES 28 A 371 ASN GLN ASP HIS MET MET ASP ALA PRO PRO LEU SER PRO SEQRES 29 A 371 PHE PRO HIS ILE LYS GLN GLN SEQRES 1 B 10 ASP ILE TYR CYS TYR GLU GLU PHE SER ASP SEQRES 1 C 371 GLY GLU PHE THR GLN SER VAL SER ARG LEU GLN SER ILE SEQRES 2 C 371 VAL ALA GLY LEU LYS ASN ALA PRO SER ASP GLN LEU ILE SEQRES 3 C 371 ASN ILE PHE GLU SER CYS VAL ARG ASN PRO VAL GLU ASN SEQRES 4 C 371 ILE MET LYS ILE LEU LYS GLY ILE GLY GLU THR PHE CYS SEQRES 5 C 371 GLN HIS TYR THR GLN SER THR ASP GLU GLN PRO GLY SER SEQRES 6 C 371 HIS ILE ASP PHE ALA VAL ASN ARG LEU LYS LEU ALA GLU SEQRES 7 C 371 ILE LEU TYR TYR LYS ILE LEU GLU THR VAL MET VAL GLN SEQRES 8 C 371 GLU THR ARG ARG LEU HIS GLY MET ASP MET SER VAL LEU SEQRES 9 C 371 LEU GLU GLN ASP ILE PHE HIS ARG SER LEU MET ALA CYS SEQRES 10 C 371 CYS LEU GLU ILE VAL LEU PHE ALA TYR SER SER PRO ARG SEQRES 11 C 371 THR PHE PRO TRP ILE ILE GLU VAL LEU ASN LEU GLN PRO SEQRES 12 C 371 PHE TYR PHE TYR LYS VAL ILE GLU VAL VAL ILE ARG SER SEQRES 13 C 371 GLU GLU GLY LEU SER ARG ASP MET VAL LYS HIS LEU ASN SEQRES 14 C 371 SER ILE GLU GLU GLN ILE LEU GLU SER LEU ALA TRP SER SEQRES 15 C 371 HIS ASP SER ALA LEU TRP GLU ALA LEU GLN VAL SER ALA SEQRES 16 C 371 ASN LYS VAL PRO THR CYS GLU GLU VAL ILE PHE PRO ASN SEQRES 17 C 371 ASN PHE GLU THR GLY ASN ASN ARG PRO LYS ARG THR GLY SEQRES 18 C 371 SER LEU ALA LEU PHE TYR ARG LYS VAL TYR HIS LEU ALA SEQRES 19 C 371 SER VAL ARG LEU ARG ASP LEU CYS LEU LYS LEU ASP VAL SEQRES 20 C 371 SER ASN GLU LEU ARG ARG LYS ILE TRP THR CYS PHE GLU SEQRES 21 C 371 PHE THR LEU VAL HIS CYS PRO ASP LEU MET LYS ASP ARG SEQRES 22 C 371 HIS LEU ASP GLN LEU LEU LEU CYS ALA PHE TYR ILE MET SEQRES 23 C 371 ALA LYS VAL THR LYS GLU GLU ARG THR PHE GLN GLU ILE SEQRES 24 C 371 MET LYS SER TYR ARG ASN GLN PRO GLN ALA ASN SER HIS SEQRES 25 C 371 VAL TYR ARG SER VAL LEU LEU LYS SER ILE LYS GLU GLU SEQRES 26 C 371 ARG GLY ASP LEU ILE LYS PHE TYR ASN THR ILE TYR VAL SEQRES 27 C 371 GLY ARG VAL LYS SER PHE ALA LEU LYS TYR ASP LEU ALA SEQRES 28 C 371 ASN GLN ASP HIS MET MET ASP ALA PRO PRO LEU SER PRO SEQRES 29 C 371 PHE PRO HIS ILE LYS GLN GLN SEQRES 1 D 10 ASP ILE TYR CYS TYR GLU GLU PHE SER ASP HET SO4 A1001 5 HET SO4 A1002 5 HET SO4 C1001 5 HET SO4 C1002 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 4(O4 S 2-) FORMUL 9 HOH *41(H2 O) HELIX 1 AA1 THR A 391 VAL A 401 1 11 HELIX 2 AA2 GLN A 411 SER A 418 1 8 HELIX 3 AA3 PRO A 423 THR A 443 1 21 HELIX 4 AA4 HIS A 453 GLU A 479 1 27 HELIX 5 AA5 GLU A 479 HIS A 484 1 6 HELIX 6 AA6 VAL A 490 GLU A 493 5 4 HELIX 7 AA7 GLN A 494 TYR A 513 1 20 HELIX 8 AA8 PRO A 520 LEU A 526 1 7 HELIX 9 AA9 GLN A 529 TYR A 534 1 6 HELIX 10 AB1 VAL A 536 ARG A 542 1 7 HELIX 11 AB2 SER A 548 SER A 565 1 18 HELIX 12 AB3 ALA A 573 VAL A 580 1 8 HELIX 13 AB4 SER A 787 LEU A 810 1 24 HELIX 14 AB5 LEU A 816 CYS A 831 1 16 HELIX 15 AB6 HIS A 839 VAL A 854 1 16 HELIX 16 AB7 THR A 860 ARG A 869 1 10 HELIX 17 AB8 SER A 876 SER A 881 1 6 HELIX 18 AB9 ASP A 929 ILE A 937 1 9 HELIX 19 AC1 ILE A 937 LEU A 947 1 11 HELIX 20 AC2 THR C 391 VAL C 401 1 11 HELIX 21 AC3 SER C 409 CYS C 419 1 11 HELIX 22 AC4 PRO C 423 GLN C 444 1 22 HELIX 23 AC5 HIS C 453 GLU C 479 1 27 HELIX 24 AC6 GLU C 479 HIS C 484 1 6 HELIX 25 AC7 SER C 489 GLU C 493 5 5 HELIX 26 AC8 GLN C 494 TYR C 513 1 20 HELIX 27 AC9 PRO C 520 LEU C 526 1 7 HELIX 28 AD1 GLN C 529 TYR C 534 1 6 HELIX 29 AD2 VAL C 536 SER C 543 1 8 HELIX 30 AD3 SER C 548 SER C 565 1 18 HELIX 31 AD4 SER C 572 VAL C 580 1 9 HELIX 32 AD5 THR C 587 PHE C 593 1 7 HELIX 33 AD6 GLY C 786 LEU C 810 1 25 HELIX 34 AD7 LEU C 816 HIS C 830 1 15 HELIX 35 AD8 CYS C 831 LYS C 836 5 6 HELIX 36 AD9 HIS C 839 VAL C 854 1 16 HELIX 37 AE1 THR C 860 ASN C 870 1 11 HELIX 38 AE2 ASN C 875 TYR C 879 5 5 HELIX 39 AE3 ASP C 929 ILE C 937 1 9 HELIX 40 AE4 ILE C 937 LEU C 947 1 11 CISPEP 1 PHE A 519 PRO A 520 0 1.90 CISPEP 2 PHE C 519 PRO C 520 0 0.33 CRYST1 63.158 63.302 83.344 85.94 68.44 73.99 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015833 -0.004542 -0.006413 0.00000 SCALE2 0.000000 0.016434 0.000560 0.00000 SCALE3 0.000000 0.000000 0.012908 0.00000