HEADER HYDROLASE 28-OCT-21 7SNJ TITLE STRUCTURE OF BACPLE_01701, A 6-O-GALACTOSE PORPHYRAN SULFATASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARYLSULFATASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 6-O-GALACTOSE PORPHYRAN SULFATASE; COMPND 5 EC: 3.1.6.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHOCAEICOLA PLEBEIUS DSM 17135; SOURCE 3 ORGANISM_TAXID: 484018; SOURCE 4 GENE: BACPLE_01701; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS 6-O-GALACTOSE PORPHYRAN SULFATASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.ULAGANATHAN,M.CYGLER REVDAT 3 25-OCT-23 7SNJ 1 REMARK REVDAT 2 10-MAY-23 7SNJ 1 JRNL REVDAT 1 05-OCT-22 7SNJ 0 JRNL AUTH S.MATHIEU,M.TOUVREY,L.POULET,S.DROUILLARD,T.S.ULAGANATHAN, JRNL AUTH 2 L.SEGUREL,M.CYGLER,W.HELBERT JRNL TITL THE PORPHYRAN DEGRADATION SYSTEM OF THE HUMAN GUT MICROBIOTA JRNL TITL 2 IS COMPLETE, PHYLOGENETICALLY DIVERSE AND GEOGRAPHICALLY JRNL TITL 3 STRUCTURED ACROSS ASIAN POPULATIONS JRNL REF BIORXIV 2023 JRNL REFN ISSN 2692-8205 JRNL DOI 10.1101/2023.03.30.534863 REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19RC4_4035 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 65435 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3271 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.7000 - 4.9500 1.00 2845 149 0.1810 0.1926 REMARK 3 2 4.9500 - 3.9300 1.00 2744 145 0.1349 0.1810 REMARK 3 3 3.9300 - 3.4300 1.00 2755 145 0.1523 0.1729 REMARK 3 4 3.4300 - 3.1200 1.00 2708 142 0.1709 0.2138 REMARK 3 5 3.1200 - 2.8900 1.00 2714 143 0.1751 0.2132 REMARK 3 6 2.8900 - 2.7200 1.00 2704 142 0.1804 0.1986 REMARK 3 7 2.7200 - 2.5900 1.00 2719 144 0.1775 0.2157 REMARK 3 8 2.5900 - 2.4700 1.00 2715 143 0.1687 0.2247 REMARK 3 9 2.4700 - 2.3800 1.00 2689 141 0.1636 0.2341 REMARK 3 10 2.3800 - 2.3000 1.00 2702 142 0.1689 0.2018 REMARK 3 11 2.3000 - 2.2200 1.00 2689 142 0.1819 0.2322 REMARK 3 12 2.2200 - 2.1600 1.00 2690 142 0.2009 0.2373 REMARK 3 13 2.1600 - 2.1000 1.00 2673 139 0.2342 0.2540 REMARK 3 14 2.1000 - 2.0500 1.00 2717 143 0.2510 0.2473 REMARK 3 15 2.0500 - 2.0100 1.00 2668 141 0.2454 0.2875 REMARK 3 16 2.0100 - 1.9600 1.00 2674 141 0.2633 0.2506 REMARK 3 17 1.9600 - 1.9200 1.00 2669 140 0.2733 0.3292 REMARK 3 18 1.9200 - 1.8900 1.00 2697 142 0.3195 0.3383 REMARK 3 19 1.8900 - 1.8500 1.00 2675 141 0.3679 0.3787 REMARK 3 20 1.8500 - 1.8200 1.00 2687 141 0.4208 0.4105 REMARK 3 21 1.8200 - 1.7900 1.00 2667 141 0.4791 0.4745 REMARK 3 22 1.7900 - 1.7700 1.00 2689 141 0.5730 0.4945 REMARK 3 23 1.7700 - 1.7400 1.00 2674 141 0.6133 0.6575 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.690 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4305 REMARK 3 ANGLE : 0.897 5799 REMARK 3 CHIRALITY : 0.054 588 REMARK 3 PLANARITY : 0.008 745 REMARK 3 DIHEDRAL : 11.821 593 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 31 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.8049 41.1080 11.1354 REMARK 3 T TENSOR REMARK 3 T11: 0.4247 T22: 0.3816 REMARK 3 T33: 0.3518 T12: -0.0838 REMARK 3 T13: 0.0194 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 2.0007 L22: 1.8928 REMARK 3 L33: 0.5906 L12: -0.4852 REMARK 3 L13: 0.0588 L23: -0.1282 REMARK 3 S TENSOR REMARK 3 S11: -0.0685 S12: 0.0232 S13: -0.1145 REMARK 3 S21: 0.0354 S22: 0.0227 S23: -0.1640 REMARK 3 S31: -0.0052 S32: 0.0935 S33: 0.0485 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 122 THROUGH 196 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.6197 51.2816 21.2933 REMARK 3 T TENSOR REMARK 3 T11: 0.5402 T22: 0.4643 REMARK 3 T33: 0.4766 T12: -0.1222 REMARK 3 T13: -0.1003 T23: 0.0450 REMARK 3 L TENSOR REMARK 3 L11: 1.3252 L22: 5.5669 REMARK 3 L33: 0.6026 L12: -0.9463 REMARK 3 L13: 0.1106 L23: -0.0495 REMARK 3 S TENSOR REMARK 3 S11: -0.0377 S12: -0.0781 S13: -0.0609 REMARK 3 S21: 0.7106 S22: 0.0130 S23: -0.2193 REMARK 3 S31: -0.2662 S32: 0.2119 S33: 0.0085 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 197 THROUGH 246 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.1292 53.7900 10.9985 REMARK 3 T TENSOR REMARK 3 T11: 0.5275 T22: 0.4173 REMARK 3 T33: 0.3633 T12: -0.1073 REMARK 3 T13: 0.0179 T23: 0.0258 REMARK 3 L TENSOR REMARK 3 L11: 2.6022 L22: 1.8622 REMARK 3 L33: 0.5152 L12: -0.1931 REMARK 3 L13: 0.1957 L23: 0.1345 REMARK 3 S TENSOR REMARK 3 S11: -0.1685 S12: 0.1053 S13: 0.1492 REMARK 3 S21: 0.0408 S22: 0.0330 S23: 0.0121 REMARK 3 S31: -0.1364 S32: 0.0577 S33: 0.1337 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 247 THROUGH 482 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.5489 42.1658 13.0063 REMARK 3 T TENSOR REMARK 3 T11: 0.4365 T22: 0.3611 REMARK 3 T33: 0.3609 T12: -0.0612 REMARK 3 T13: 0.0393 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 1.5032 L22: 1.0615 REMARK 3 L33: 0.5467 L12: -0.2624 REMARK 3 L13: -0.1228 L23: 0.1361 REMARK 3 S TENSOR REMARK 3 S11: -0.0937 S12: -0.0139 S13: -0.0672 REMARK 3 S21: 0.1128 S22: 0.0052 S23: 0.0877 REMARK 3 S31: -0.0208 S32: 0.0464 S33: 0.0842 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 483 THROUGH 536 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.0434 25.3764 12.8186 REMARK 3 T TENSOR REMARK 3 T11: 0.4684 T22: 0.3835 REMARK 3 T33: 0.6339 T12: -0.0841 REMARK 3 T13: 0.1230 T23: -0.0431 REMARK 3 L TENSOR REMARK 3 L11: 2.0597 L22: 2.4240 REMARK 3 L33: 2.1430 L12: -1.0096 REMARK 3 L13: 1.0546 L23: -0.9708 REMARK 3 S TENSOR REMARK 3 S11: -0.0389 S12: 0.1199 S13: -0.5360 REMARK 3 S21: 0.0460 S22: -0.0346 S23: 0.3320 REMARK 3 S31: 0.2542 S32: -0.0664 S33: 0.0093 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7SNJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1000260777. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 77429 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.740 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 18.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5G2V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% PEG 200, 100MM SODIUM CITRATE REMARK 280 PH5.5, 30% MPD, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.88000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 15.44000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 30.88000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 15.44000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 805 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 THR A 3 REMARK 465 ASN A 4 REMARK 465 LEU A 5 REMARK 465 LYS A 6 REMARK 465 ASN A 7 REMARK 465 ASN A 8 REMARK 465 ILE A 9 REMARK 465 MET A 10 REMARK 465 LYS A 11 REMARK 465 GLY A 12 REMARK 465 MET A 13 REMARK 465 ALA A 14 REMARK 465 VAL A 15 REMARK 465 MET A 16 REMARK 465 PRO A 17 REMARK 465 PHE A 18 REMARK 465 LEU A 19 REMARK 465 SER A 20 REMARK 465 VAL A 21 REMARK 465 CYS A 22 REMARK 465 VAL A 23 REMARK 465 GLY A 24 REMARK 465 VAL A 25 REMARK 465 ALA A 26 REMARK 465 ALA A 27 REMARK 465 GLN A 28 REMARK 465 GLN A 29 REMARK 465 LYS A 30 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 65 CD OE1 OE2 REMARK 470 HIS A 150 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 153 CG CD OE1 NE2 REMARK 470 ASP A 168 CG OD1 OD2 REMARK 470 LYS A 169 CD CE NZ REMARK 470 LYS A 170 CD CE NZ REMARK 470 GLU A 286 CD OE1 OE2 REMARK 470 LYS A 466 CG CD CE NZ REMARK 470 LYS A 498 CD CE NZ REMARK 470 LYS A 501 CD CE NZ REMARK 470 LYS A 504 CE NZ REMARK 470 LYS A 533 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 148 OG1 THR A 160 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 80 96.99 -176.52 REMARK 500 LYS A 100 2.74 80.36 REMARK 500 TRP A 132 -68.97 -98.37 REMARK 500 PRO A 172 44.42 -94.41 REMARK 500 PRO A 213 36.80 -96.99 REMARK 500 ASN A 280 75.34 -153.06 REMARK 500 LEU A 338 57.73 -97.17 REMARK 500 ASP A 345 -151.27 55.72 REMARK 500 LYS A 346 -128.95 -127.76 REMARK 500 ARG A 347 -40.80 75.87 REMARK 500 MET A 426 -22.32 68.17 REMARK 500 HIS A 428 -50.52 77.59 REMARK 500 LEU A 535 36.73 -87.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 609 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 40 OD1 REMARK 620 2 ASP A 41 OD1 91.1 REMARK 620 3 SER A 83 OG 98.8 115.4 REMARK 620 4 ASP A 333 OD1 89.2 93.6 149.5 REMARK 620 5 ASP A 333 OD2 89.5 145.1 98.9 51.5 REMARK 620 6 GLN A 334 OE1 174.6 85.8 86.5 86.6 90.5 REMARK 620 N 1 2 3 4 5 DBREF 7SNJ A 1 536 UNP B5CYA4 B5CYA4_BACPM 1 536 SEQRES 1 A 536 MET LYS THR ASN LEU LYS ASN ASN ILE MET LYS GLY MET SEQRES 2 A 536 ALA VAL MET PRO PHE LEU SER VAL CYS VAL GLY VAL ALA SEQRES 3 A 536 ALA GLN GLN LYS GLN MET ASN VAL ILE TYR ILE MET SER SEQRES 4 A 536 ASP ASP HIS THR SER GLN ALA ILE GLY ALA TYR GLY SER SEQRES 5 A 536 ARG LEU ALA VAL LEU ASN PRO THR PRO THR ILE ASP GLU SEQRES 6 A 536 LEU ALA ARG ASP GLY MET LEU PHE GLU ASN CYS PHE CYS SEQRES 7 A 536 THR ASN SER ILE SER THR PRO SER ARG ALA CYS ILE MET SEQRES 8 A 536 THR GLY GLN TYR SER HIS ARG ASN LYS VAL LEU THR LEU SEQRES 9 A 536 ASP GLU VAL LEU GLN PRO ASP GLN GLU TYR LEU VAL ASP SEQRES 10 A 536 GLU PHE HIS ASN MET GLY TYR GLN THR ALA MET ILE GLY SEQRES 11 A 536 LYS TRP HIS LEU GLY CYS GLU PRO SER HIS PHE ASP TYR SEQRES 12 A 536 TYR SER VAL PHE ASN GLY HIS GLY GLY GLN GLY GLU TYR SEQRES 13 A 536 PHE ASP PRO THR PHE LEU THR SER ASP VAL THR ASP LYS SEQRES 14 A 536 LYS TRP PRO ASN ASN GLN ILE LYS LYS MET GLY TYR SER SEQRES 15 A 536 SER ASP ILE VAL THR ASN LEU ALA ILE ASP TRP LEU LYS SEQRES 16 A 536 ASN ARG ARG ASP LYS SER LYS PRO PHE PHE MET MET HIS SEQRES 17 A 536 HIS TYR LYS ALA PRO HIS ASP MET PHE GLU TYR ALA PRO SEQRES 18 A 536 ARG TYR GLU TYR TYR LEU ASP ASP VAL GLU VAL PRO VAL SEQRES 19 A 536 PRO LEU SER LEU PHE ASP THR ASP LYS TRP GLY SER GLU SEQRES 20 A 536 GLY THR ARG GLY LYS ASN ASP SER LEU ARG HIS PHE ILE SEQRES 21 A 536 GLY THR SER VAL SER SER ARG HIS GLU ILE ARG ASN TYR SEQRES 22 A 536 VAL MET GLU TYR LYS CYS ASN THR GLY ASP GLU MET GLU SEQRES 23 A 536 ASN THR TYR LEU ALA TYR GLN HIS TYR LEU LYS SER TYR SEQRES 24 A 536 LEU ARG CYS VAL LYS GLY VAL ASP ASP ASN LEU LYS ARG SEQRES 25 A 536 LEU PHE ASP TYR LEU LYS LYS GLU GLY LEU TRP GLU ASN SEQRES 26 A 536 THR ILE ILE VAL TYR THR GLY ASP GLN GLY MET MET LEU SEQRES 27 A 536 GLY GLU HIS ASP LEU GLN ASP LYS ARG TRP MET TYR GLU SEQRES 28 A 536 GLU SER GLN ARG MET PRO PHE ILE VAL ARG ASP PRO ARG SEQRES 29 A 536 CYS PRO TYR LYS GLY ALA LYS SER ASP LEU MET ILE ASN SEQRES 30 A 536 ASN ILE ASP PHE ALA PRO THR LEU ILE GLU MET VAL GLY SEQRES 31 A 536 GLY LYS GLU PRO SER TYR MET ASP GLY LYS SER PHE ALA SEQRES 32 A 536 SER VAL PHE GLU GLY LYS LYS PRO GLU ASN TRP LYS ASP SEQRES 33 A 536 ALA VAL TYR TYR ARG TYR TRP MET HIS MET ILE HIS HIS SEQRES 34 A 536 ASP VAL PRO ALA HIS ILE GLY ILE ARG THR GLU ASN TYR SEQRES 35 A 536 LYS LEU ILE LEU PHE TYR GLY ARG HIS TYR ASP ASP LYS SEQRES 36 A 536 ARG TYR GLY GLN LYS SER MET SER TRP LEU LYS ASN SER SEQRES 37 A 536 HIS LYS ILE VAL PRO THR LEU VAL SER PHE GLU LEU TYR SEQRES 38 A 536 ASP VAL LYS ASN ASP PRO TYR GLU MET VAL ASN LEU ALA SEQRES 39 A 536 ASP ASN PRO LYS TYR ALA LYS VAL LEU LYS ASP MET LYS SEQRES 40 A 536 LYS LYS LEU ARG GLU LEU ARG LYS GLN VAL GLY ASP THR SEQRES 41 A 536 ASP GLU ALA TYR PRO GLU LEU LYS LYS VAL ILE ASP LYS SEQRES 42 A 536 ALA LEU ARG HET EDO A 601 10 HET EDO A 602 10 HET EDO A 603 10 HET P4G A 604 29 HET PG4 A 605 31 HET PEG A 606 17 HET PEG A 607 17 HET CIT A 608 18 HET NA A 609 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM P4G 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM CIT CITRIC ACID HETNAM NA SODIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO 3(C2 H6 O2) FORMUL 5 P4G C8 H18 O3 FORMUL 6 PG4 C8 H18 O5 FORMUL 7 PEG 2(C4 H10 O3) FORMUL 9 CIT C6 H8 O7 FORMUL 10 NA NA 1+ FORMUL 11 HOH *196(H2 O) HELIX 1 AA1 THR A 43 GLY A 51 5 9 HELIX 2 AA2 SER A 52 ASN A 58 5 7 HELIX 3 AA3 THR A 60 ASP A 69 1 10 HELIX 4 AA4 ILE A 82 GLY A 93 1 12 HELIX 5 AA5 TYR A 95 LYS A 100 1 6 HELIX 6 AA6 GLN A 109 GLN A 112 5 4 HELIX 7 AA7 GLU A 113 MET A 122 1 10 HELIX 8 AA8 ASN A 148 GLN A 153 1 6 HELIX 9 AA9 TYR A 181 ARG A 197 1 17 HELIX 10 AB1 ALA A 220 GLU A 224 5 5 HELIX 11 AB2 PRO A 235 PHE A 239 5 5 HELIX 12 AB3 SER A 246 GLY A 251 1 6 HELIX 13 AB4 LYS A 252 SER A 255 5 4 HELIX 14 AB5 ASN A 272 TYR A 277 1 6 HELIX 15 AB6 ASP A 283 GLU A 320 1 38 HELIX 16 AB7 GLY A 339 LEU A 343 5 5 HELIX 17 AB8 TYR A 350 ARG A 355 1 6 HELIX 18 AB9 ASP A 380 VAL A 389 1 10 HELIX 19 AC1 PHE A 402 GLY A 408 5 7 HELIX 20 AC2 ASP A 453 TYR A 457 5 5 HELIX 21 AC3 ASN A 496 LYS A 498 5 3 HELIX 22 AC4 TYR A 499 GLY A 518 1 20 HELIX 23 AC5 TYR A 524 LEU A 535 1 12 SHEET 1 AA110 GLN A 175 LYS A 177 0 SHEET 2 AA110 THR A 160 THR A 163 -1 N PHE A 161 O ILE A 176 SHEET 3 AA110 TYR A 143 PHE A 147 -1 N VAL A 146 O LEU A 162 SHEET 4 AA110 GLN A 125 GLY A 130 1 N GLY A 130 O SER A 145 SHEET 5 AA110 PHE A 204 TYR A 210 1 O HIS A 209 N ILE A 129 SHEET 6 AA110 ASN A 33 SER A 39 1 N TYR A 36 O HIS A 208 SHEET 7 AA110 THR A 326 GLY A 332 1 O ILE A 327 N ASN A 33 SHEET 8 AA110 PHE A 358 ARG A 361 -1 O ARG A 361 N ILE A 328 SHEET 9 AA110 MET A 71 PHE A 73 -1 N PHE A 73 O PHE A 358 SHEET 10 AA110 ALA A 370 SER A 372 1 O ALA A 370 N LEU A 72 SHEET 1 AA2 2 CYS A 76 PHE A 77 0 SHEET 2 AA2 2 ILE A 376 ASN A 377 1 O ILE A 376 N PHE A 77 SHEET 1 AA3 4 ALA A 417 TYR A 422 0 SHEET 2 AA3 4 HIS A 434 THR A 439 -1 O HIS A 434 N TYR A 422 SHEET 3 AA3 4 TYR A 442 PHE A 447 -1 O LEU A 446 N ILE A 435 SHEET 4 AA3 4 SER A 477 ASP A 482 -1 O SER A 477 N PHE A 447 LINK OD1 ASP A 40 NA NA A 609 1555 1555 2.29 LINK OD1 ASP A 41 NA NA A 609 1555 1555 2.34 LINK OG SER A 83 NA NA A 609 1555 1555 2.71 LINK OD1 ASP A 333 NA NA A 609 1555 1555 2.73 LINK OD2 ASP A 333 NA NA A 609 1555 1555 2.21 LINK OE1 GLN A 334 NA NA A 609 1555 1555 2.34 CISPEP 1 TRP A 171 PRO A 172 0 -0.30 CISPEP 2 ALA A 212 PRO A 213 0 1.64 CISPEP 3 ASP A 215 MET A 216 0 3.78 CRYST1 154.860 154.860 46.320 90.00 90.00 120.00 P 62 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006457 0.003728 0.000000 0.00000 SCALE2 0.000000 0.007456 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021589 0.00000