HEADER IMMUNE SYSTEM 28-OCT-21 7SO0 TITLE CRYSTAL STRUCTURE OF THE ENGINEERED TICK EVASIN EVA-P974(F31A) TITLE 2 COMPLEXED TO HUMAN CHEMOKINE CCL2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: EVASIN P974; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: C-C MOTIF CHEMOKINE 2; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: HC11,MONOCYTE CHEMOATTRACTANT PROTEIN 1,MONOCYTE CHEMOTACTIC COMPND 10 AND ACTIVATING FACTOR,MCAF,MONOCYTE CHEMOTACTIC PROTEIN 1,MCP-1, COMPND 11 MONOCYTE SECRETORY PROTEIN JE,SMALL-INDUCIBLE CYTOKINE A2; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AMBLYOMMA CAJENNENSE; SOURCE 3 ORGANISM_COMMON: CAYENNE TICK, ACARUS CAJENNENSIS; SOURCE 4 ORGANISM_TAXID: 34607; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 GENE: CCL2, MCP1, SCYA2; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INFLAMMATION, CHEMOKINE, TICK EVASIN, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR R.P.BHUSAL,S.R.DEVKOTA,P.ARYAL,M.C.J.WILCE,M.J.STONE REVDAT 2 18-OCT-23 7SO0 1 REMARK REVDAT 1 16-MAR-22 7SO0 0 JRNL AUTH R.P.BHUSAL,P.ARYAL,S.R.DEVKOTA,R.POKHREL,M.J.GUNZBURG, JRNL AUTH 2 S.R.FOSTER,H.D.LIM,R.J.PAYNE,M.C.J.WILCE,M.J.STONE JRNL TITL STRUCTURE-GUIDED ENGINEERING OF TICK EVASINS FOR TARGETING JRNL TITL 2 CHEMOKINES IN INFLAMMATORY DISEASES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 119 2022 JRNL REFN ESSN 1091-6490 JRNL PMID 35217625 JRNL DOI 10.1073/PNAS.2122105119 REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.040 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 33772 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.710 REMARK 3 FREE R VALUE TEST SET COUNT : 1589 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.8600 - 3.8600 0.98 2850 204 0.1514 0.1775 REMARK 3 2 3.8600 - 3.0700 1.00 2919 112 0.1661 0.1659 REMARK 3 3 3.0700 - 2.6800 1.00 2968 123 0.1949 0.2341 REMARK 3 4 2.6800 - 2.4400 1.00 2945 108 0.2328 0.2291 REMARK 3 5 2.4300 - 2.2600 1.00 2942 160 0.2275 0.2154 REMARK 3 6 2.2600 - 2.1300 1.00 2969 128 0.1971 0.2285 REMARK 3 7 2.1300 - 2.0200 1.00 2978 110 0.1745 0.2489 REMARK 3 8 2.0200 - 1.9300 1.00 2885 164 0.1995 0.2568 REMARK 3 9 1.9300 - 1.8600 1.00 2927 192 0.2114 0.2628 REMARK 3 10 1.8600 - 1.7900 1.00 2928 148 0.2371 0.2124 REMARK 3 11 1.7900 - 1.7400 0.99 2872 140 0.2526 0.2952 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.141 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.435 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.56 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1181 REMARK 3 ANGLE : 1.119 1604 REMARK 3 CHIRALITY : 0.050 182 REMARK 3 PLANARITY : 0.007 207 REMARK 3 DIHEDRAL : 5.573 162 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.1253 -14.9058 -14.3774 REMARK 3 T TENSOR REMARK 3 T11: 0.2469 T22: 0.1832 REMARK 3 T33: 0.1810 T12: 0.0483 REMARK 3 T13: 0.0230 T23: 0.0307 REMARK 3 L TENSOR REMARK 3 L11: 3.7598 L22: 4.1197 REMARK 3 L33: 3.8633 L12: 1.7308 REMARK 3 L13: 0.6975 L23: 1.4375 REMARK 3 S TENSOR REMARK 3 S11: 0.0209 S12: 0.0632 S13: -0.3944 REMARK 3 S21: -0.1556 S22: 0.0291 S23: -0.4327 REMARK 3 S31: 0.2476 S32: 0.2190 S33: -0.0489 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 42 THROUGH 85 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.3595 -5.6709 -4.5783 REMARK 3 T TENSOR REMARK 3 T11: 0.3011 T22: 0.2277 REMARK 3 T33: 0.1445 T12: 0.0133 REMARK 3 T13: -0.0244 T23: 0.0407 REMARK 3 L TENSOR REMARK 3 L11: 7.9491 L22: 5.4478 REMARK 3 L33: 6.5146 L12: 0.8907 REMARK 3 L13: -2.2964 L23: 2.1676 REMARK 3 S TENSOR REMARK 3 S11: 0.1986 S12: -0.1686 S13: -0.1952 REMARK 3 S21: 0.1783 S22: -0.2189 S23: -0.1163 REMARK 3 S31: -0.2399 S32: 0.1527 S33: 0.0198 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 7 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.6603 -17.5772 -20.4571 REMARK 3 T TENSOR REMARK 3 T11: 0.2433 T22: 0.1560 REMARK 3 T33: 0.2289 T12: 0.0113 REMARK 3 T13: 0.0372 T23: 0.0176 REMARK 3 L TENSOR REMARK 3 L11: 1.6808 L22: 7.8374 REMARK 3 L33: 8.7251 L12: 1.6835 REMARK 3 L13: 1.5813 L23: 4.6752 REMARK 3 S TENSOR REMARK 3 S11: -0.1854 S12: -0.0609 S13: -0.1743 REMARK 3 S21: 0.0112 S22: -0.1768 S23: 0.0943 REMARK 3 S31: 0.1785 S32: -0.0955 S33: 0.3892 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 22 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.3969 -23.6648 -20.3326 REMARK 3 T TENSOR REMARK 3 T11: 0.3012 T22: 0.2929 REMARK 3 T33: 0.2749 T12: -0.0342 REMARK 3 T13: 0.0722 T23: 0.0085 REMARK 3 L TENSOR REMARK 3 L11: 3.8295 L22: 6.9642 REMARK 3 L33: 4.7710 L12: 0.2984 REMARK 3 L13: -0.7753 L23: -0.3904 REMARK 3 S TENSOR REMARK 3 S11: -0.0691 S12: -0.0832 S13: -0.0808 REMARK 3 S21: 0.6566 S22: 0.0401 S23: 0.7636 REMARK 3 S31: 0.6614 S32: -0.6064 S33: -0.0719 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 32 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.2919 -12.9060 -19.3968 REMARK 3 T TENSOR REMARK 3 T11: 0.2393 T22: 0.2030 REMARK 3 T33: 0.2348 T12: 0.0308 REMARK 3 T13: 0.0136 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 4.5694 L22: 2.9023 REMARK 3 L33: 4.4510 L12: 2.9016 REMARK 3 L13: 1.9301 L23: 3.1824 REMARK 3 S TENSOR REMARK 3 S11: -0.1581 S12: -0.0976 S13: 0.5448 REMARK 3 S21: 0.0362 S22: -0.1950 S23: 0.7717 REMARK 3 S31: -0.3283 S32: -0.3361 S33: 0.3168 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 46 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.2383 -23.3297 -23.9661 REMARK 3 T TENSOR REMARK 3 T11: 0.2579 T22: 0.1829 REMARK 3 T33: 0.1928 T12: -0.0138 REMARK 3 T13: 0.0351 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 7.1106 L22: 4.3181 REMARK 3 L33: 3.3294 L12: 1.7188 REMARK 3 L13: 0.0586 L23: -0.1220 REMARK 3 S TENSOR REMARK 3 S11: -0.0864 S12: 0.1639 S13: -0.1418 REMARK 3 S21: -0.0278 S22: 0.0814 S23: 0.4033 REMARK 3 S31: 0.1808 S32: -0.4991 S33: -0.0126 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7SO0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1000260773. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.953731894493 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33772 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.740 REMARK 200 RESOLUTION RANGE LOW (A) : 31.860 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 10.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.0700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.77 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7S58 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NA3 CIT 3.5 PH (BUFFER) 25 %W/V REMARK 280 PEG 3350 (PRECIPITANT), PH 3.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.45467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.22733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 1 REMARK 465 GLN B 1 REMARK 465 PRO B 2 REMARK 465 ASP B 3 REMARK 465 ALA B 4 REMARK 465 ILE B 5 REMARK 465 ASN B 6 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 17 CE NZ REMARK 470 LYS A 29 CD CE NZ REMARK 470 MET A 57 CG SD CE REMARK 470 LYS A 68 CG CD CE NZ REMARK 470 ARG A 76 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 18 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 19 CG CD CE NZ REMARK 470 GLN B 23 CG CD OE1 NE2 REMARK 470 ARG B 29 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 30 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 38 CG CD CE NZ REMARK 470 LYS B 69 CE NZ REMARK 470 GLN B 72 CG CD OE1 NE2 REMARK 470 LYS B 75 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 117 O HOH B 149 1.90 REMARK 500 OD1 ASP B 62 O HOH B 101 2.08 REMARK 500 NZ LYS B 49 O HOH B 102 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 137 O HOH B 132 1665 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS B 58 CD LYS B 58 CE -0.158 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 61 CG - CD - OE1 ANGL. DEV. = 13.8 DEGREES REMARK 500 GLU A 61 CG - CD - OE2 ANGL. DEV. = -21.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 57 -40.26 76.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLU A 61 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF1 7SO0 A 1 85 UNP EV974_AMBCJ DBREF2 7SO0 A A0A023FDY8 30 114 DBREF 7SO0 B 1 76 UNP P13500 CCL2_HUMAN 24 99 SEQADV 7SO0 ALA A 23 UNP A0A023FDY PHE 52 ENGINEERED MUTATION SEQADV 7SO0 ALA B 8 UNP P13500 PRO 31 CONFLICT SEQRES 1 A 85 ASP TYR ASP TYR GLY THR ASP THR CYS PRO PHE PRO VAL SEQRES 2 A 85 LEU ALA ASN LYS THR ASN LYS ALA LYS ALA VAL GLY CYS SEQRES 3 A 85 HIS GLN LYS CYS ASN GLY GLY ASP GLN LYS LEU THR ASP SEQRES 4 A 85 GLY THR ALA CYS TYR VAL VAL GLU ARG LYS VAL TRP ASP SEQRES 5 A 85 ARG MET THR PRO MET LEU TRP TYR GLU CYS PRO LEU GLY SEQRES 6 A 85 GLU CYS LYS ASN GLY VAL CYS GLU ASP LEU ARG LYS LYS SEQRES 7 A 85 GLU ASP CYS ARG LYS GLY ASN SEQRES 1 B 76 GLN PRO ASP ALA ILE ASN ALA ALA VAL THR CYS CYS TYR SEQRES 2 B 76 ASN PHE THR ASN ARG LYS ILE SER VAL GLN ARG LEU ALA SEQRES 3 B 76 SER TYR ARG ARG ILE THR SER SER LYS CYS PRO LYS GLU SEQRES 4 B 76 ALA VAL ILE PHE LYS THR ILE VAL ALA LYS GLU ILE CYS SEQRES 5 B 76 ALA ASP PRO LYS GLN LYS TRP VAL GLN ASP SER MET ASP SEQRES 6 B 76 HIS LEU ASP LYS GLN THR GLN THR PRO LYS THR FORMUL 3 HOH *129(H2 O) HELIX 1 AA1 GLU A 47 ARG A 53 1 7 HELIX 2 AA2 SER B 21 GLN B 23 5 3 HELIX 3 AA3 GLN B 57 THR B 73 1 17 SHEET 1 AA1 7 THR B 10 CYS B 11 0 SHEET 2 AA1 7 PHE A 11 ASN A 16 -1 N PHE A 11 O CYS B 11 SHEET 3 AA1 7 VAL A 71 ARG A 82 -1 O ARG A 82 N ALA A 15 SHEET 4 AA1 7 TYR A 60 LYS A 68 -1 N TYR A 60 O CYS A 81 SHEET 5 AA1 7 ALA A 42 TYR A 44 -1 N CYS A 43 O GLY A 65 SHEET 6 AA1 7 LYS A 22 VAL A 24 1 N ALA A 23 O TYR A 44 SHEET 7 AA1 7 PHE A 11 ASN A 16 -1 N PRO A 12 O VAL A 24 SHEET 1 AA2 2 HIS A 27 CYS A 30 0 SHEET 2 AA2 2 GLY A 33 LYS A 36 -1 O GLN A 35 N GLN A 28 SHEET 1 AA3 3 LEU B 25 ILE B 31 0 SHEET 2 AA3 3 ALA B 40 THR B 45 -1 O ILE B 42 N ARG B 29 SHEET 3 AA3 3 GLU B 50 ALA B 53 -1 O ILE B 51 N PHE B 43 SSBOND 1 CYS A 9 CYS A 30 1555 1555 2.03 SSBOND 2 CYS A 26 CYS A 67 1555 1555 2.03 SSBOND 3 CYS A 43 CYS A 72 1555 1555 2.03 SSBOND 4 CYS A 62 CYS A 81 1555 1555 2.02 SSBOND 5 CYS B 11 CYS B 36 1555 1555 2.04 SSBOND 6 CYS B 12 CYS B 52 1555 1555 2.03 CRYST1 36.785 36.785 108.682 90.00 90.00 120.00 P 32 3 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027185 0.015695 0.000000 0.00000 SCALE2 0.000000 0.031391 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009201 0.00000