HEADER TOXIN/IMMUNE SYSTEM 29-OCT-21 7SO5 TITLE NOVEL STRUCTURAL INSIGHTS FOR A PAIR OF MONOCLONAL ANTIBODIES TITLE 2 RECOGNIZING NON-OVERLAPPING EPITOPES OF THE GLUCOSYLTRANSFERASE TITLE 3 DOMAIN OF CLOSTRIDIUM DIFFICILE TOXIN B COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAB B2 HC; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: FAB B2 LC; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: TOXIN B; COMPND 11 CHAIN: A; COMPND 12 EC: 2.4.1.-; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 13 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: CLOSTRIDIOIDES DIFFICILE R20291; SOURCE 17 ORGANISM_COMMON: PEPTOCLOSTRIDIUM DIFFICILE; SOURCE 18 ORGANISM_TAXID: 645463; SOURCE 19 GENE: TCDB, TOXB; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ANTIBODY, TOXIN, TCDB, EPITOPE, CLOSTRIDIUM DIFFICILE TOXIN, TOXIN- KEYWDS 2 IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.LIU REVDAT 2 18-OCT-23 7SO5 1 REMARK REVDAT 1 11-MAY-22 7SO5 0 JRNL AUTH J.LIU,M.KOTHE,J.ZHANG,E.OLOO,S.STEGALKINA,S.T.MUNDLE,L.LI, JRNL AUTH 2 J.ZHANG,L.E.COLE,L.BARONE,H.P.BIEMANN,H.KLEANTHOUS, JRNL AUTH 3 N.G.ANOSOVA,S.F.ANDERSON JRNL TITL NOVEL STRUCTURAL INSIGHTS FOR A PAIR OF MONOCLONAL JRNL TITL 2 ANTIBODIES RECOGNIZING NON-OVERLAPPING EPITOPES OF THE JRNL TITL 3 GLUCOSYLTRANSFERASE DOMAIN OF CLOSTRIDIUM DIFFICILE TOXIN B. JRNL REF CURR RES STRUCT BIOL V. 4 96 2022 JRNL REFN ESSN 2665-928X JRNL PMID 35469152 JRNL DOI 10.1016/J.CRSTBI.2022.03.003 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 3 NUMBER OF REFLECTIONS : 95043 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 4684 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 52.8600 - 5.5828 0.98 3210 165 0.1589 0.1969 REMARK 3 2 5.5828 - 4.4320 0.99 3204 163 0.1466 0.1655 REMARK 3 3 4.4320 - 3.8719 0.92 2973 172 0.1455 0.1507 REMARK 3 4 3.8719 - 3.5180 0.91 2918 167 0.1686 0.2308 REMARK 3 5 3.5180 - 3.2659 0.94 2975 176 0.1796 0.2163 REMARK 3 6 3.2659 - 3.0734 0.99 3174 159 0.1944 0.2295 REMARK 3 7 3.0734 - 2.9195 0.99 3222 149 0.2005 0.2448 REMARK 3 8 2.9195 - 2.7924 0.99 3196 157 0.1993 0.2168 REMARK 3 9 2.7924 - 2.6849 0.99 3218 151 0.1983 0.2259 REMARK 3 10 2.6849 - 2.5922 0.88 2833 145 0.2044 0.2742 REMARK 3 11 2.5922 - 2.5112 1.00 3194 152 0.2011 0.2544 REMARK 3 12 2.5112 - 2.4394 1.00 3170 180 0.2042 0.2497 REMARK 3 13 2.4394 - 2.3752 1.00 3200 177 0.1957 0.2412 REMARK 3 14 2.3752 - 2.3172 1.00 3184 174 0.1918 0.2381 REMARK 3 15 2.3172 - 2.2646 1.00 3199 148 0.1959 0.2696 REMARK 3 16 2.2646 - 2.2164 0.77 2466 128 0.1915 0.2313 REMARK 3 17 2.2164 - 2.1720 1.00 3168 162 0.1905 0.2103 REMARK 3 18 2.1720 - 2.1310 1.00 3250 145 0.1990 0.2276 REMARK 3 19 2.1310 - 2.0930 1.00 3201 172 0.2051 0.2856 REMARK 3 20 2.0930 - 2.0575 0.71 2260 110 0.2065 0.2979 REMARK 3 21 2.0575 - 2.0243 1.00 3206 155 0.2155 0.2711 REMARK 3 22 2.0243 - 1.9932 1.00 3196 184 0.2069 0.2508 REMARK 3 23 1.9932 - 1.9639 1.00 3176 162 0.2224 0.2593 REMARK 3 24 1.9639 - 1.9362 1.00 3169 171 0.2186 0.2858 REMARK 3 25 1.9362 - 1.9100 0.75 849 42 0.2332 0.3439 REMARK 3 26 1.9100 - 1.8852 0.90 2826 145 0.2466 0.2899 REMARK 3 27 1.8852 - 1.8617 1.00 3173 173 0.2386 0.2808 REMARK 3 28 1.8617 - 1.8392 1.00 3212 155 0.2368 0.2947 REMARK 3 29 1.8392 - 1.8178 1.00 3169 180 0.2401 0.3068 REMARK 3 30 1.8178 - 1.7974 1.00 3168 165 0.2483 0.2863 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.82 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7SO5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1000260012. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-AUG-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978720 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 95088 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 52.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2BVL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.2 AND 39% POLYETHYLENE REMARK 280 GLYCOL 400, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 55.36100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 305 REMARK 465 SER A 306 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH L 331 O HOH L 461 1.91 REMARK 500 OE2 GLU A 313 O HOH A 601 1.91 REMARK 500 OH TYR A 214 O HOH A 602 1.99 REMARK 500 O HOH A 947 O HOH A 970 2.06 REMARK 500 O HOH A 822 O HOH A 943 2.06 REMARK 500 O HOH A 837 O HOH A 889 2.10 REMARK 500 O HOH A 869 O HOH A 949 2.11 REMARK 500 O HOH H 409 O HOH H 434 2.11 REMARK 500 O HOH A 732 O HOH A 754 2.13 REMARK 500 OE2 GLU A 540 O HOH A 603 2.14 REMARK 500 O HOH L 441 O HOH L 445 2.15 REMARK 500 O HOH H 405 O HOH H 478 2.15 REMARK 500 OE1 GLU A 313 O HOH A 604 2.16 REMARK 500 O HOH A 606 O HOH A 730 2.17 REMARK 500 OE1 GLN A 294 O HOH A 605 2.19 REMARK 500 NZ LYS A 303 O HOH A 606 2.19 REMARK 500 O HOH H 370 O HOH H 375 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH H 302 O HOH L 450 2656 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO H 158 C - N - CD ANGL. DEV. = -18.2 DEGREES REMARK 500 PRO L 146 C - N - CD ANGL. DEV. = -23.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER H 15 -11.42 79.77 REMARK 500 VAL H 104 -56.85 70.14 REMARK 500 ASP H 153 58.80 75.43 REMARK 500 PRO L 146 123.69 39.39 REMARK 500 ALA A 135 37.15 -142.22 REMARK 500 ASN A 378 -164.27 -128.40 REMARK 500 ASN A 384 33.66 -85.35 REMARK 500 LEU A 468 -60.07 -100.99 REMARK 500 MET A 489 -83.49 -116.50 REMARK 500 PHE A 522 74.41 -62.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE H 155 PRO H 156 57.27 REMARK 500 GLU H 157 PRO H 158 107.50 REMARK 500 TYR L 145 PRO L 146 -102.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PHE H 155 12.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH H 480 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH H 481 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH H 482 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH H 483 DISTANCE = 6.65 ANGSTROMS REMARK 525 HOH H 484 DISTANCE = 6.71 ANGSTROMS REMARK 525 HOH H 485 DISTANCE = 7.66 ANGSTROMS REMARK 525 HOH H 486 DISTANCE = 7.91 ANGSTROMS REMARK 525 HOH H 487 DISTANCE = 8.37 ANGSTROMS REMARK 525 HOH A 989 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH A 990 DISTANCE = 6.94 ANGSTROMS DBREF 7SO5 H 1 222 PDB 7SO5 7SO5 1 222 DBREF 7SO5 L 1 216 PDB 7SO5 7SO5 1 216 DBREF 7SO5 A 3 543 UNP P18177 TCDB_CLODI 3 543 SEQRES 1 H 215 GLN VAL GLN LEU LEU GLN GLY GLY ALA GLY LEU LEU LYS SEQRES 2 H 215 PRO SER GLU THR LEU SER LEU THR CYS ALA VAL TYR GLY SEQRES 3 H 215 GLY SER PHE SER GLU HIS TYR TRP SER TRP ILE ARG GLN SEQRES 4 H 215 PRO PRO GLY LYS GLY LEU GLU TRP ILE GLY GLU ILE ASN SEQRES 5 H 215 TYR GLY GLY ASN THR ASN TYR ASN PRO SER LEU GLU SER SEQRES 6 H 215 ARG ILE SER ILE SER VAL ASP THR SER LYS ASN GLN VAL SEQRES 7 H 215 PHE LEU ARG VAL ARG PHE VAL THR ALA ALA ASP THR ALA SEQRES 8 H 215 VAL TYR PHE CYS SER GLY GLY ARG ARG ALA ALA VAL HIS SEQRES 9 H 215 GLY ARG THR PHE ALA ILE TRP GLY GLN GLY THR MET VAL SEQRES 10 H 215 THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL PHE SEQRES 11 H 215 PRO LEU ALA PRO GLY GLY THR ALA ALA LEU GLY CYS LEU SEQRES 12 H 215 VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP SEQRES 13 H 215 ASN SER GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO SEQRES 14 H 215 ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SER SEQRES 15 H 215 VAL VAL THR VAL PRO SER SER SER LEU GLY THR GLN THR SEQRES 16 H 215 TYR ILE CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS SEQRES 17 H 215 VAL ASP LYS LYS VAL GLU PRO SEQRES 1 L 216 ASP ILE VAL MET THR GLN SER PRO LEU SER LEU PRO VAL SEQRES 2 L 216 THR PRO GLY GLU PRO ALA SER ILE SER CYS ARG SER SER SEQRES 3 L 216 GLN SER LEU LEU HIS THR ASN GLY ASN ASN TYR LEU VAL SEQRES 4 L 216 TRP TYR LEU GLN LYS PRO GLY GLN ALA PRO HIS LEU LEU SEQRES 5 L 216 ILE TYR LEU GLY SER ASN ARG ALA SER GLY VAL PRO GLY SEQRES 6 L 216 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 L 216 LYS ILE SER ARG VAL GLU VAL GLU ASP VAL GLY VAL TYR SEQRES 8 L 216 TYR CYS MET GLN SER LEU GLN THR PRO PRO THR PHE GLY SEQRES 9 L 216 GLN GLY THR LYS LEU GLU ILE LYS ARG THR VAL ALA ALA SEQRES 10 L 216 PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN LEU SEQRES 11 L 216 LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN ASN SEQRES 12 L 216 PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP SEQRES 13 L 216 ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL THR SEQRES 14 L 216 GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SER SER SEQRES 15 L 216 THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS LYS SEQRES 16 L 216 VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SER SEQRES 17 L 216 PRO VAL THR LYS SER PHE ASN ARG SEQRES 1 A 541 LEU VAL ASN ARG LYS GLN LEU GLU LYS MET ALA ASN VAL SEQRES 2 A 541 ARG PHE ARG THR GLN GLU ASP GLU TYR VAL ALA ILE LEU SEQRES 3 A 541 ASP ALA LEU GLU GLU TYR HIS ASN MET SER GLU ASN THR SEQRES 4 A 541 VAL VAL GLU LYS TYR LEU LYS LEU LYS ASP ILE ASN SER SEQRES 5 A 541 LEU THR ASP ILE TYR ILE ASP THR TYR LYS LYS SER GLY SEQRES 6 A 541 ARG ASN LYS ALA LEU LYS LYS PHE LYS GLU TYR LEU VAL SEQRES 7 A 541 THR GLU VAL LEU GLU LEU LYS ASN ASN ASN LEU THR PRO SEQRES 8 A 541 VAL GLU LYS ASN LEU HIS PHE VAL TRP ILE GLY GLY GLN SEQRES 9 A 541 ILE ASN ASP THR ALA ILE ASN TYR ILE ASN GLN TRP LYS SEQRES 10 A 541 ASP VAL ASN SER ASP TYR ASN VAL ASN VAL PHE TYR ASP SEQRES 11 A 541 SER ASN ALA PHE LEU ILE ASN THR LEU LYS LYS THR VAL SEQRES 12 A 541 VAL GLU SER ALA ILE ASN ASP THR LEU GLU SER PHE ARG SEQRES 13 A 541 GLU ASN LEU ASN ASP PRO ARG PHE ASP TYR ASN LYS PHE SEQRES 14 A 541 PHE ARG LYS ARG MET GLU ILE ILE TYR ASP LYS GLN LYS SEQRES 15 A 541 ASN PHE ILE ASN TYR TYR LYS ALA GLN ARG GLU GLU ASN SEQRES 16 A 541 PRO GLU LEU ILE ILE ASP ASP ILE VAL LYS THR TYR LEU SEQRES 17 A 541 SER ASN GLU TYR SER LYS GLU ILE ASP GLU LEU ASN THR SEQRES 18 A 541 TYR ILE GLU GLU SER LEU ASN LYS ILE THR GLN ASN SER SEQRES 19 A 541 GLY ASN ASP VAL ARG ASN PHE GLU GLU PHE LYS ASN GLY SEQRES 20 A 541 GLU SER PHE ASN LEU TYR GLU GLN GLU LEU VAL GLU ARG SEQRES 21 A 541 TRP ASN LEU ALA ALA ALA SER ASP ILE LEU ARG ILE SER SEQRES 22 A 541 ALA LEU LYS GLU ILE GLY GLY MET TYR LEU ASP VAL ASP SEQRES 23 A 541 MET LEU PRO GLY ILE GLN PRO ASP LEU PHE GLU SER ILE SEQRES 24 A 541 GLU LYS PRO SER SER VAL THR VAL ASP PHE TRP GLU MET SEQRES 25 A 541 THR LYS LEU GLU ALA ILE MET LYS TYR LYS GLU TYR ILE SEQRES 26 A 541 PRO GLU TYR THR SER GLU HIS PHE ASP MET LEU ASP GLU SEQRES 27 A 541 GLU VAL GLN SER SER PHE GLU SER VAL LEU ALA SER LYS SEQRES 28 A 541 SER ASP LYS SER GLU ILE PHE SER SER LEU GLY ASP MET SEQRES 29 A 541 GLU ALA SER PRO LEU GLU VAL LYS ILE ALA PHE ASN SER SEQRES 30 A 541 LYS GLY ILE ILE ASN GLN GLY LEU ILE SER VAL LYS ASP SEQRES 31 A 541 SER TYR CYS SER ASN LEU ILE VAL LYS GLN ILE GLU ASN SEQRES 32 A 541 ARG TYR LYS ILE LEU ASN ASN SER LEU ASN PRO ALA ILE SEQRES 33 A 541 SER GLU ASP ASN ASP PHE ASN THR THR THR ASN THR PHE SEQRES 34 A 541 ILE ASP SER ILE MET ALA GLU ALA ASN ALA ASP ASN GLY SEQRES 35 A 541 ARG PHE MET MET GLU LEU GLY LYS TYR LEU ARG VAL GLY SEQRES 36 A 541 PHE PHE PRO ASP VAL LYS THR THR ILE ASN LEU SER GLY SEQRES 37 A 541 PRO GLU ALA TYR ALA ALA ALA TYR GLN ASP LEU LEU MET SEQRES 38 A 541 PHE LYS GLU GLY SER MET ASN ILE HIS LEU ILE GLU ALA SEQRES 39 A 541 ASP LEU ARG ASN PHE GLU ILE SER LYS THR ASN ILE SER SEQRES 40 A 541 GLN SER THR GLU GLN GLU MET ALA SER LEU TRP SER PHE SEQRES 41 A 541 ASP ASP ALA ARG ALA LYS ALA GLN PHE GLU GLU TYR LYS SEQRES 42 A 541 ARG ASN TYR PHE GLU GLY SER LEU FORMUL 4 HOH *752(H2 O) HELIX 1 AA1 THR H 87 THR H 91 5 5 HELIX 2 AA2 SER H 165 ALA H 167 5 3 HELIX 3 AA3 SER H 196 LEU H 198 5 3 HELIX 4 AA4 LYS H 210 ASN H 213 5 4 HELIX 5 AA5 GLU L 84 VAL L 88 5 5 HELIX 6 AA6 SER L 126 LYS L 131 1 6 HELIX 7 AA7 LYS L 188 LYS L 193 1 6 HELIX 8 AA8 ASN A 5 ALA A 13 1 9 HELIX 9 AA9 GLU A 21 ASN A 36 1 16 HELIX 10 AB1 THR A 41 TYR A 63 1 23 HELIX 11 AB2 ARG A 68 ASN A 90 1 23 HELIX 12 AB3 ASN A 108 ASN A 122 1 15 HELIX 13 AB4 LEU A 137 PHE A 157 1 21 HELIX 14 AB5 TYR A 168 ASN A 197 1 30 HELIX 15 AB6 ILE A 201 SER A 215 1 15 HELIX 16 AB7 GLU A 217 GLN A 234 1 18 HELIX 17 AB8 PHE A 243 GLY A 249 1 7 HELIX 18 AB9 SER A 251 GLU A 261 1 11 HELIX 19 AC1 ASN A 264 GLY A 281 1 18 HELIX 20 AC2 THR A 308 GLU A 325 1 18 HELIX 21 AC3 ASP A 339 SER A 352 1 14 HELIX 22 AC4 ASP A 355 ILE A 359 5 5 HELIX 23 AC5 SER A 393 GLU A 420 1 28 HELIX 24 AC6 ASP A 423 ALA A 437 1 15 HELIX 25 AC7 ASN A 443 GLY A 451 1 9 HELIX 26 AC8 LYS A 452 VAL A 456 5 5 HELIX 27 AC9 LYS A 463 SER A 469 1 7 HELIX 28 AD1 GLY A 470 MET A 483 1 14 HELIX 29 AD2 ILE A 494 ARG A 499 1 6 HELIX 30 AD3 ASN A 500 GLU A 502 5 3 HELIX 31 AD4 SER A 504 ILE A 508 5 5 HELIX 32 AD5 THR A 512 LEU A 519 1 8 HELIX 33 AD6 ASP A 523 PHE A 539 1 17 SHEET 1 AA1 4 GLN H 3 GLY H 8 0 SHEET 2 AA1 4 LEU H 18 TYR H 25 -1 O TYR H 25 N GLN H 3 SHEET 3 AA1 4 GLN H 78 VAL H 83 -1 O VAL H 79 N CYS H 22 SHEET 4 AA1 4 ILE H 68 ASP H 73 -1 N SER H 71 O PHE H 80 SHEET 1 AA2 6 LEU H 11 LEU H 12 0 SHEET 2 AA2 6 THR H 116 VAL H 120 1 O THR H 119 N LEU H 12 SHEET 3 AA2 6 ALA H 92 ALA H 102 -1 N TYR H 94 O THR H 116 SHEET 4 AA2 6 TYR H 33 GLN H 39 -1 N ILE H 37 O PHE H 95 SHEET 5 AA2 6 GLU H 46 ILE H 51 -1 O ILE H 48 N TRP H 36 SHEET 6 AA2 6 THR H 58 TYR H 60 -1 O ASN H 59 N GLU H 50 SHEET 1 AA3 4 LEU H 11 LEU H 12 0 SHEET 2 AA3 4 THR H 116 VAL H 120 1 O THR H 119 N LEU H 12 SHEET 3 AA3 4 ALA H 92 ALA H 102 -1 N TYR H 94 O THR H 116 SHEET 4 AA3 4 GLY H 106 TRP H 112 -1 O THR H 108 N ARG H 100 SHEET 1 AA4 4 SER H 129 LEU H 133 0 SHEET 2 AA4 4 THR H 144 TYR H 154 -1 O LEU H 150 N PHE H 131 SHEET 3 AA4 4 TYR H 185 PRO H 194 -1 O VAL H 193 N ALA H 145 SHEET 4 AA4 4 VAL H 172 THR H 174 -1 N HIS H 173 O VAL H 190 SHEET 1 AA5 4 SER H 129 LEU H 133 0 SHEET 2 AA5 4 THR H 144 TYR H 154 -1 O LEU H 150 N PHE H 131 SHEET 3 AA5 4 TYR H 185 PRO H 194 -1 O VAL H 193 N ALA H 145 SHEET 4 AA5 4 VAL H 178 LEU H 179 -1 N VAL H 178 O SER H 186 SHEET 1 AA6 3 THR H 160 TRP H 163 0 SHEET 2 AA6 3 ILE H 204 HIS H 209 -1 O ASN H 206 N SER H 162 SHEET 3 AA6 3 THR H 214 LYS H 219 -1 O VAL H 216 N VAL H 207 SHEET 1 AA7 4 MET L 4 SER L 7 0 SHEET 2 AA7 4 ALA L 19 SER L 25 -1 O SER L 22 N SER L 7 SHEET 3 AA7 4 ASP L 75 ILE L 80 -1 O ILE L 80 N ALA L 19 SHEET 4 AA7 4 PHE L 67 SER L 72 -1 N SER L 68 O LYS L 79 SHEET 1 AA8 6 SER L 10 VAL L 13 0 SHEET 2 AA8 6 THR L 107 ILE L 111 1 O LYS L 108 N LEU L 11 SHEET 3 AA8 6 GLY L 89 GLN L 95 -1 N TYR L 91 O THR L 107 SHEET 4 AA8 6 LEU L 38 GLN L 43 -1 N GLN L 43 O VAL L 90 SHEET 5 AA8 6 HIS L 50 TYR L 54 -1 O LEU L 52 N TRP L 40 SHEET 6 AA8 6 ASN L 58 ARG L 59 -1 O ASN L 58 N TYR L 54 SHEET 1 AA9 4 SER L 119 PHE L 123 0 SHEET 2 AA9 4 THR L 134 PHE L 144 -1 O ASN L 142 N SER L 119 SHEET 3 AA9 4 TYR L 178 SER L 187 -1 O LEU L 186 N ALA L 135 SHEET 4 AA9 4 SER L 164 VAL L 168 -1 N SER L 167 O SER L 181 SHEET 1 AB1 4 ALA L 158 LEU L 159 0 SHEET 2 AB1 4 LYS L 150 VAL L 155 -1 N VAL L 155 O ALA L 158 SHEET 3 AB1 4 VAL L 196 THR L 202 -1 O GLU L 200 N GLN L 152 SHEET 4 AB1 4 VAL L 210 ASN L 215 -1 O VAL L 210 N VAL L 201 SHEET 1 AB2 2 THR A 92 PRO A 93 0 SHEET 2 AB2 2 GLU A 367 ALA A 368 -1 O ALA A 368 N THR A 92 SHEET 1 AB3 6 GLY A 237 ASP A 239 0 SHEET 2 AB3 6 ASN A 126 TYR A 131 1 N VAL A 129 O ASN A 238 SHEET 3 AB3 6 ASN A 97 VAL A 101 1 N LEU A 98 O ASN A 128 SHEET 4 AB3 6 GLY A 282 LEU A 285 1 O MET A 283 N HIS A 99 SHEET 5 AB3 6 GLY A 381 SER A 389 -1 O SER A 389 N GLY A 282 SHEET 6 AB3 6 LYS A 374 ASN A 378 -1 N LYS A 374 O ILE A 388 SSBOND 1 CYS H 22 CYS H 96 1555 1555 2.08 SSBOND 2 CYS H 149 CYS H 205 1555 1555 2.04 SSBOND 3 CYS L 23 CYS L 93 1555 1555 2.08 SSBOND 4 CYS L 139 CYS L 199 1555 1555 2.02 CISPEP 1 SER L 7 PRO L 8 0 -5.56 CISPEP 2 THR L 99 PRO L 100 0 -3.83 CRYST1 61.167 110.722 83.060 90.00 99.33 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016349 0.000000 0.002687 0.00000 SCALE2 0.000000 0.009032 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012201 0.00000